Carg06053 (gene) Silver-seed gourd (SMH-JMG-627) v2

Overview


Name	Carg06053
Type	gene
Organism	Cucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
Description	Protein of unknown function (DUF 3339)
Location	Carg_Chr04: 21689299 .. 21690931 (+)
RNA-Seq Expression	Carg06053
Synteny	Carg06053

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTCGGATTGGGCGCCAGTGGTGATCGGAGTTGTTCTGTTCGTGCTGCTTTCGCCAGGGCTTCTGTTCCAGTTCCCGGGGAATAATCGGCAGTTTGAGTTCGGGAGTATGAAGACTAACGGTAAAGCTGTAGTCATTCATACTCTCATCTTCTTCATCCTCTATGCCGTCTTCATTCTCGCTCTTCATGTCCACATCTACTCTGGATGATCCGGTAACCTCTTCTTCTCGTCCTTCTTCCGTTTTCATTCGAGATTCTTACGAACTGAAGCTGCTGCTTTCCTAGTGGTGTTTGTGCCTTGTGTGTTGTTGTATTTCTGTTTGATGCGGATCTTGTTTGATCTGTTTGTATTTGCGATTTCTGTAGTCGAAGACTCGGAAGAGATAGAAGGCATTCTGTATGTTTATTTCGTTTTACTTACGCCTTTGGTTTCCATTGCTAGTATAGATCTAATTGCATCGAACGCTGGTCTCTGTAGCTGCTCTATCTCATGGAGAATCTTCTTTTTTGTCTCTCTTTGTTCTTCGATTTAATAAATTCAACGCATCTCAAGTACAAGATATTCGTCCTAGTGCGGACAGTCTGGCTAAAATTTTGTTCAAATTTGGTTTGTTCCATGGTAAAAGCAAGCTAGTAAAGGATATTATCGATTAGTTAGGAAATAGGGAAGAATTTTGCTCAAGATATTCAAGGAATTACCGTGAGAGTATTTACAGAAGCTTACCTTCTTTATCAACCCCCCAAAAAGAATTGAAATTATAGTTTACATTTAGCAGATTACAATATAGAAAGGTGTTGTTCAAACGGAAAAAGAGAACAGGAAAATGGAGCAGAATAGAGAGAAATATGCTAAGTCCTAGAGAAAGTGAAAACAAAAGGAAGCAATTCATCTGCTGAAGGTAGGCAAAGCAGATGATTGAAAGTCAGTTAACGTGTATGTGAATACCGATAGCGATGACCAATATGGTGAGTATGCAGAAGAAAATGATAGCGTGCACCAAAATGGCAATCCCACTGGTATTCATATTCCCAAACTCCACCACCCTGATTCTCGCCGGCAACTGAAAAAGCAACCCTGGCGACAGGACAATGAACAGCGCCACCGCCACAACAACCGGTCCCCAGTCTGCACTCATCTCAATCTACAAGAGGAGGAGGAGTGTTCTGAAGTAGTGGAGTTCCTCTTCAAGTTCTATAGAGAGAATTGAAGGTTAGAAGTAGGTGAAAAGAAAAGAGGGGTTATAAGGGTGAACGAGCTTGTTGATTTGCTTAGCAAAGAAGGAGCTTAGGGGATGCCAAACTTGGGGAGAAAGAAGAGAAAATGGTTTATAAGCAAGGGAAAGTCATGTTGATGAGTCGAAGGCAGTGGATCTGCTTTATAAAGATGGAAAGAAAAGGATCTGTATTGAACTGCACTTTATTTCTTGCTTTAGAGATGTGTGAGGAAGGTGGAGGGTGTTTTGTTTAAAAAAAAATGGATGTGTGGGCCAAGTGTAAAGGCGGGTTATAATGCTTAAGAGTATTGAGAATGCTTTGTTGTTTTAATTGTTTCTTTACAGCAAAGGTTTTGGAAGAATTGCCATAAAGATGATTAAAGCTTGTGGAATTCATTGTACCATGATGCAGGAATGA

mRNA sequence

ATGTCGGATTGGGCGCCAGTGGTGATCGGAGTTGTTCTGTTCGTGCTGCTTTCGCCAGGGCTTCTGTTCCAGTTCCCGGGGAATAATCGGCAGTTTGAGTTCGGGAGTATGAAGACTAACGTTAACGTGTATGTGAATACCGATAGCGATGACCAATATGGTGAGTATGCAGAAGAAAATGATAGCGTGCACCAAAATGGCAATCCCACTGGTATTCATATTCCCAAACTCCACCACCCTGATTCTCGCCGGCAACTGAAAAAGCAACCCTGGCGACAGGACAATGAACAGCGCCACCGCCACAACAACCGGTCCCCAGTCTGCACTCATCTCAATCTACAAGAGGAGGAGGAGTGTTCTGAAGTAGTGGAGTTCCTCTTCAACAAAGGTTTTGGAAGAATTGCCATAAAGATGATTAAAGCTTGTGGAATTCATTGTACCATGATGCAGGAATGA

Coding sequence (CDS)

ATGTCGGATTGGGCGCCAGTGGTGATCGGAGTTGTTCTGTTCGTGCTGCTTTCGCCAGGGCTTCTGTTCCAGTTCCCGGGGAATAATCGGCAGTTTGAGTTCGGGAGTATGAAGACTAACGTTAACGTGTATGTGAATACCGATAGCGATGACCAATATGGTGAGTATGCAGAAGAAAATGATAGCGTGCACCAAAATGGCAATCCCACTGGTATTCATATTCCCAAACTCCACCACCCTGATTCTCGCCGGCAACTGAAAAAGCAACCCTGGCGACAGGACAATGAACAGCGCCACCGCCACAACAACCGGTCCCCAGTCTGCACTCATCTCAATCTACAAGAGGAGGAGGAGTGTTCTGAAGTAGTGGAGTTCCTCTTCAACAAAGGTTTTGGAAGAATTGCCATAAAGATGATTAAAGCTTGTGGAATTCATTGTACCATGATGCAGGAATGA

Protein sequence

MSDWAPVVIGVVLFVLLSPGLLFQFPGNNRQFEFGSMKTNVNVYVNTDSDDQYGEYAEENDSVHQNGNPTGIHIPKLHHPDSRRQLKKQPWRQDNEQRHRHNNRSPVCTHLNLQEEEECSEVVEFLFNKGFGRIAIKMIKACGIHCTMMQE

Homology

[Close]

BLAST of Carg06053 vs. NCBI nr
Match: KAG7033373.1 (hypothetical protein SDJN02_07429, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 315.8 bits (808), Expect = 2.0e-82
Identity = 151/151 (100.00%), Postives = 151/151 (100.00%), Query Frame = 0


Query: 1   MSDWAPVVIGVVLFVLLSPGLLFQFPGNNRQFEFGSMKTNVNVYVNTDSDDQYGEYAEEN 60
           MSDWAPVVIGVVLFVLLSPGLLFQFPGNNRQFEFGSMKTNVNVYVNTDSDDQYGEYAEEN
Sbjct: 1   MSDWAPVVIGVVLFVLLSPGLLFQFPGNNRQFEFGSMKTNVNVYVNTDSDDQYGEYAEEN 60

Query: 61  DSVHQNGNPTGIHIPKLHHPDSRRQLKKQPWRQDNEQRHRHNNRSPVCTHLNLQEEEECS 120
           DSVHQNGNPTGIHIPKLHHPDSRRQLKKQPWRQDNEQRHRHNNRSPVCTHLNLQEEEECS
Sbjct: 61  DSVHQNGNPTGIHIPKLHHPDSRRQLKKQPWRQDNEQRHRHNNRSPVCTHLNLQEEEECS 120

Query: 121 EVVEFLFNKGFGRIAIKMIKACGIHCTMMQE 152
           EVVEFLFNKGFGRIAIKMIKACGIHCTMMQE
Sbjct: 121 EVVEFLFNKGFGRIAIKMIKACGIHCTMMQE 151

[Close]

BLAST of Carg06053 vs. NCBI nr
Match: KAG7015947.1 (hypothetical protein SDJN02_21051, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 85.5 bits (210), Expect = 4.3e-13
Identity = 40/40 (100.00%), Postives = 40/40 (100.00%), Query Frame = 0


Query: 1   MSDWAPVVIGVVLFVLLSPGLLFQFPGNNRQFEFGSMKTN 41
           MSDWAPVVIGVVLFVLLSPGLLFQFPGNNRQFEFGSMKTN
Sbjct: 91  MSDWAPVVIGVVLFVLLSPGLLFQFPGNNRQFEFGSMKTN 130

[Close]

BLAST of Carg06053 vs. NCBI nr
Match: XP_011649954.2 (uncharacterized protein LOC101211888 [Cucumis sativus])

HSP 1 Score: 85.5 bits (210), Expect = 4.3e-13
Identity = 40/40 (100.00%), Postives = 40/40 (100.00%), Query Frame = 0


Query: 1   MSDWAPVVIGVVLFVLLSPGLLFQFPGNNRQFEFGSMKTN 41
           MSDWAPVVIGVVLFVLLSPGLLFQFPGNNRQFEFGSMKTN
Sbjct: 74  MSDWAPVVIGVVLFVLLSPGLLFQFPGNNRQFEFGSMKTN 113

[Close]

BLAST of Carg06053 vs. NCBI nr
Match: XP_038884726.1 (uncharacterized protein LOC120075418 [Benincasa hispida])

HSP 1 Score: 85.5 bits (210), Expect = 4.3e-13
Identity = 40/40 (100.00%), Postives = 40/40 (100.00%), Query Frame = 0


Query: 1   MSDWAPVVIGVVLFVLLSPGLLFQFPGNNRQFEFGSMKTN 41
           MSDWAPVVIGVVLFVLLSPGLLFQFPGNNRQFEFGSMKTN
Sbjct: 77  MSDWAPVVIGVVLFVLLSPGLLFQFPGNNRQFEFGSMKTN 116

[Close]

BLAST of Carg06053 vs. NCBI nr
Match: XP_023551540.1 (uncharacterized protein LOC111809330 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 85.5 bits (210), Expect = 4.3e-13
Identity = 40/40 (100.00%), Postives = 40/40 (100.00%), Query Frame = 0


Query: 1   MSDWAPVVIGVVLFVLLSPGLLFQFPGNNRQFEFGSMKTN 41
           MSDWAPVVIGVVLFVLLSPGLLFQFPGNNRQFEFGSMKTN
Sbjct: 155 MSDWAPVVIGVVLFVLLSPGLLFQFPGNNRQFEFGSMKTN 194

[Close]

BLAST of Carg06053 vs. ExPASy TrEMBL
Match: A0A6J1K207 (uncharacterized protein LOC111489412 OS=Cucurbita maxima OX=3661 GN=LOC111489412 PE=4 SV=1)

HSP 1 Score: 85.5 bits (210), Expect = 2.1e-13
Identity = 40/40 (100.00%), Postives = 40/40 (100.00%), Query Frame = 0


Query: 1   MSDWAPVVIGVVLFVLLSPGLLFQFPGNNRQFEFGSMKTN 41
           MSDWAPVVIGVVLFVLLSPGLLFQFPGNNRQFEFGSMKTN
Sbjct: 126 MSDWAPVVIGVVLFVLLSPGLLFQFPGNNRQFEFGSMKTN 165

[Close]

BLAST of Carg06053 vs. ExPASy TrEMBL
Match: A0A0A0LMK8 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G406095 PE=4 SV=1)

HSP 1 Score: 85.5 bits (210), Expect = 2.1e-13
Identity = 40/40 (100.00%), Postives = 40/40 (100.00%), Query Frame = 0


Query: 1  MSDWAPVVIGVVLFVLLSPGLLFQFPGNNRQFEFGSMKTN 41
          MSDWAPVVIGVVLFVLLSPGLLFQFPGNNRQFEFGSMKTN
Sbjct: 1  MSDWAPVVIGVVLFVLLSPGLLFQFPGNNRQFEFGSMKTN 40

[Close]

BLAST of Carg06053 vs. ExPASy TrEMBL
Match: A0A6J1FLS0 (uncharacterized protein LOC111445120 OS=Cucurbita moschata OX=3662 GN=LOC111445120 PE=4 SV=1)

HSP 1 Score: 85.5 bits (210), Expect = 2.1e-13
Identity = 40/40 (100.00%), Postives = 40/40 (100.00%), Query Frame = 0


Query: 1   MSDWAPVVIGVVLFVLLSPGLLFQFPGNNRQFEFGSMKTN 41
           MSDWAPVVIGVVLFVLLSPGLLFQFPGNNRQFEFGSMKTN
Sbjct: 123 MSDWAPVVIGVVLFVLLSPGLLFQFPGNNRQFEFGSMKTN 162

[Close]

BLAST of Carg06053 vs. ExPASy TrEMBL
Match: A0A1S3B3X3 (uncharacterized protein LOC103485472 isoform X1 OS=Cucumis melo OX=3656 GN=LOC103485472 PE=4 SV=1)

HSP 1 Score: 85.5 bits (210), Expect = 2.1e-13
Identity = 40/40 (100.00%), Postives = 40/40 (100.00%), Query Frame = 0


Query: 1  MSDWAPVVIGVVLFVLLSPGLLFQFPGNNRQFEFGSMKTN 41
          MSDWAPVVIGVVLFVLLSPGLLFQFPGNNRQFEFGSMKTN
Sbjct: 1  MSDWAPVVIGVVLFVLLSPGLLFQFPGNNRQFEFGSMKTN 40

[Close]

BLAST of Carg06053 vs. ExPASy TrEMBL
Match: A0A1S3B371 (uncharacterized protein LOC103485472 isoform X2 OS=Cucumis melo OX=3656 GN=LOC103485472 PE=4 SV=1)

HSP 1 Score: 85.5 bits (210), Expect = 2.1e-13
Identity = 40/40 (100.00%), Postives = 40/40 (100.00%), Query Frame = 0


Query: 1   MSDWAPVVIGVVLFVLLSPGLLFQFPGNNRQFEFGSMKTN 41
           MSDWAPVVIGVVLFVLLSPGLLFQFPGNNRQFEFGSMKTN
Sbjct: 74  MSDWAPVVIGVVLFVLLSPGLLFQFPGNNRQFEFGSMKTN 113

[Close]

BLAST of Carg06053 vs. TAIR 10
Match: AT3G27030.1 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF3339 (InterPro:IPR021775); BEST Arabidopsis thaliana protein match is: Protein of unknown function (DUF 3339) (TAIR:AT5G40970.1); Has 538 Blast hits to 271 proteins in 16 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 534; Viruses - 4; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 68.9 bits (167), Expect = 3.9e-12
Identity = 29/40 (72.50%), Postives = 35/40 (87.50%), Query Frame = 0


Query: 1   MSDWAPVVIGVVLFVLLSPGLLFQFPGNNRQFEFGSMKTN 41
           M+DWAPV++GVVLFV+LSPGLLF  PGNNR  +FG +KTN
Sbjct: 74  MADWAPVLVGVVLFVILSPGLLFSLPGNNRTVDFGGLKTN 113

[Close]

BLAST of Carg06053 vs. TAIR 10
Match: AT5G40970.1 (Protein of unknown function (DUF 3339) )

HSP 1 Score: 64.7 bits (156), Expect = 7.3e-11
Identity = 27/40 (67.50%), Postives = 34/40 (85.00%), Query Frame = 0


Query: 1  MSDWAPVVIGVVLFVLLSPGLLFQFPGNNRQFEFGSMKTN 41
          M+DWAPV++GVVLFV+LSPGLLF  PG++   +FG MKTN
Sbjct: 1  MADWAPVLVGVVLFVILSPGLLFSLPGHHHTLQFGGMKTN 40

[Close]

BLAST of Carg06053 vs. TAIR 10
Match: AT3G48660.1 (Protein of unknown function (DUF 3339) )

HSP 1 Score: 59.7 bits (143), Expect = 2.3e-09
Identity = 27/48 (56.25%), Postives = 37/48 (77.08%), Query Frame = 0


Query: 1  MSDWAPVVIGVVLFVLLSPGLLFQFPGNNRQFEFGSMKTN-VNVYVNT 48
          M+DW PVV+ V+LFVLL+PGLLFQ P   R  EFG+M+T+  ++ V+T
Sbjct: 1  MADWGPVVVAVILFVLLTPGLLFQIPARGRVVEFGNMQTSGASILVHT 48

[Close]

BLAST of Carg06053 vs. TAIR 10
Match: AT5G50560.1 (Protein of unknown function (DUF 3339) )

HSP 1 Score: 58.9 bits (141), Expect = 4.0e-09
Identity = 25/40 (62.50%), Postives = 32/40 (80.00%), Query Frame = 0


Query: 1  MSDWAPVVIGVVLFVLLSPGLLFQFPGNNRQFEFGSMKTN 41
          M++W PVV+  VLFV+LSPGLLFQ PGNN   +FG M+T+
Sbjct: 1  MTEWLPVVVATVLFVVLSPGLLFQVPGNNNFVDFGKMETS 40

[Close]

BLAST of Carg06053 vs. TAIR 10
Match: AT5G50660.1 (Protein of unknown function (DUF 3339) )

HSP 1 Score: 58.9 bits (141), Expect = 4.0e-09
Identity = 25/40 (62.50%), Postives = 32/40 (80.00%), Query Frame = 0


Query: 1  MSDWAPVVIGVVLFVLLSPGLLFQFPGNNRQFEFGSMKTN 41
          M++W PVV+  VLFV+LSPGLLFQ PGNN   +FG M+T+
Sbjct: 1  MTEWLPVVVATVLFVVLSPGLLFQVPGNNNFVDFGKMETS 40

The following BLAST results are available for this feature:

BLAST of Carg06053 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG7033373.1	2.0e-82	100.00	hypothetical protein SDJN02_07429, partial [Cucurbita argyrosperma subsp. argyro...	[more]
KAG7015947.1	4.3e-13	100.00	hypothetical protein SDJN02_21051, partial [Cucurbita argyrosperma subsp. argyro...	[more]
XP_011649954.2	4.3e-13	100.00	uncharacterized protein LOC101211888 [Cucumis sativus]	[more]
XP_038884726.1	4.3e-13	100.00	uncharacterized protein LOC120075418 [Benincasa hispida]	[more]
XP_023551540.1	4.3e-13	100.00	uncharacterized protein LOC111809330 [Cucurbita pepo subsp. pepo]	[more]

BLAST of Carg06053 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of Carg06053 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1K207	2.1e-13	100.00	uncharacterized protein LOC111489412 OS=Cucurbita maxima OX=3661 GN=LOC111489412...	[more]
A0A0A0LMK8	2.1e-13	100.00	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G406095 PE=4 SV=1	[more]
A0A6J1FLS0	2.1e-13	100.00	uncharacterized protein LOC111445120 OS=Cucurbita moschata OX=3662 GN=LOC1114451...	[more]
A0A1S3B3X3	2.1e-13	100.00	uncharacterized protein LOC103485472 isoform X1 OS=Cucumis melo OX=3656 GN=LOC10...	[more]
A0A1S3B371	2.1e-13	100.00	uncharacterized protein LOC103485472 isoform X2 OS=Cucumis melo OX=3656 GN=LOC10...	[more]

BLAST of Carg06053 vs. TAIR 10


Match Name	E-value	Identity	Description
AT3G27030.1	3.9e-12	72.50	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biologic...	[more]
AT5G40970.1	7.3e-11	67.50	Protein of unknown function (DUF 3339)	[more]
AT3G48660.1	2.3e-09	56.25	Protein of unknown function (DUF 3339)	[more]
AT5G50560.1	4.0e-09	62.50	Protein of unknown function (DUF 3339)	[more]
AT5G50660.1	4.0e-09	62.50	Protein of unknown function (DUF 3339)	[more]

InterPro

Analysis Name: InterPro Annotations of Silver-seed gourd (SMH-JMG-627) v2
Date Performed: 2021-10-25

Position :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR021775	Protein of unknown function DUF3339	PFAM	PF11820	DUF3339	coord: 1..41 e-value: 1.1E-19 score: 70.4
IPR021775	Protein of unknown function DUF3339	PANTHER	PTHR33128	OS05G0103400 PROTEIN	coord: 1..41
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 60..103
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 76..103
None	No IPR available	PANTHER	PTHR33128:SF6	TRANSMEMBRANE PROTEIN	coord: 1..41

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Carg06053-RA	Carg06053-RA	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0016021	integral component of membrane