Carg05968 (gene) Silver-seed gourd (SMH-JMG-627) v2

Overview


Name	Carg05968
Type	gene
Organism	Cucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
Description	LOB domain-containing protein 21-like
Location	Carg_Chr04: 21330378 .. 21330893 (+)
RNA-Seq Expression	Carg05968
Synteny	Carg05968

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAGAGGGTGCCATGATACTCGTTCTTCTTCTTCTTGTGCAGCCTGCAAATTGCTGAAACGAAGGTGCACGCCCACTTGCATATTTGCGCCTTATTTTAGGTCTGATGAGCCGAAGAAATTTGCCAAGGTTCACAAAGTGTTTGGGGCGAGTAATGTGAGTAAGATTCTGACGGAGGTGCCTGAGGAGCAGAGAGAGGACACTGTGAACTCTTTGGCTTATGAGGCGGAGGCTAGGCTGAGAGATCCTGTTTATGGATGCATCGGCGCCATAGCTTTGTTGCAGACTAAATTGGCGGAGCTTCAACATGATCTTGCTCTTGCCAAAGCTCGCCTAGCTCGTTATGCTGCTGCTAATAATAATAATACTTCTTCTACTTCTTTGGGTGTTTTGGAAAATTGTGTTGTTAATATGTCTTATGGTGGATTGAGTTTCTCTGGGCAGAGTTCTGATGATATCTCCCAATATGGTTTTTTATGTGACTTTACCCATTTTCCATATCCATTTCAAGCTTGA

mRNA sequence

ATGAGAGGGTGCCATGATACTCGTTCTTCTTCTTCTTGTGCAGCCTGCAAATTGCTGAAACGAAGGTGCACGCCCACTTGCATATTTGCGCCTTATTTTAGGTCTGATGAGCCGAAGAAATTTGCCAAGGTTCACAAAGTGTTTGGGGCGAGTAATGTGAGTAAGATTCTGACGGAGGTGCCTGAGGAGCAGAGAGAGGACACTGTGAACTCTTTGGCTTATGAGGCGGAGGCTAGGCTGAGAGATCCTGTTTATGGATGCATCGGCGCCATAGCTTTGTTGCAGACTAAATTGGCGGAGCTTCAACATGATCTTGCTCTTGCCAAAGCTCGCCTAGCTCGTTATGCTGCTGCTAATAATAATAATACTTCTTCTACTTCTTTGGGTGTTTTGGAAAATTGTGTTGTTAATATGTCTTATGGTGGATTGAGTTTCTCTGGGCAGAGTTCTGATGATATCTCCCAATATGGTTTTTTATGTGACTTTACCCATTTTCCATATCCATTTCAAGCTTGA

Coding sequence (CDS)

ATGAGAGGGTGCCATGATACTCGTTCTTCTTCTTCTTGTGCAGCCTGCAAATTGCTGAAACGAAGGTGCACGCCCACTTGCATATTTGCGCCTTATTTTAGGTCTGATGAGCCGAAGAAATTTGCCAAGGTTCACAAAGTGTTTGGGGCGAGTAATGTGAGTAAGATTCTGACGGAGGTGCCTGAGGAGCAGAGAGAGGACACTGTGAACTCTTTGGCTTATGAGGCGGAGGCTAGGCTGAGAGATCCTGTTTATGGATGCATCGGCGCCATAGCTTTGTTGCAGACTAAATTGGCGGAGCTTCAACATGATCTTGCTCTTGCCAAAGCTCGCCTAGCTCGTTATGCTGCTGCTAATAATAATAATACTTCTTCTACTTCTTTGGGTGTTTTGGAAAATTGTGTTGTTAATATGTCTTATGGTGGATTGAGTTTCTCTGGGCAGAGTTCTGATGATATCTCCCAATATGGTTTTTTATGTGACTTTACCCATTTTCCATATCCATTTCAAGCTTGA

Protein sequence

MRGCHDTRSSSSCAACKLLKRRCTPTCIFAPYFRSDEPKKFAKVHKVFGASNVSKILTEVPEEQREDTVNSLAYEAEARLRDPVYGCIGAIALLQTKLAELQHDLALAKARLARYAAANNNNTSSTSLGVLENCVVNMSYGGLSFSGQSSDDISQYGFLCDFTHFPYPFQA

Homology

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BLAST of Carg05968 vs. NCBI nr
Match: KAG6602609.1 (LOB domain-containing protein 21, partial [Cucurbita argyrosperma subsp. sororia] >KAG7033290.1 LOB domain-containing protein 21, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 342.8 bits (878), Expect = 1.7e-90
Identity = 171/171 (100.00%), Postives = 171/171 (100.00%), Query Frame = 0


Query: 1   MRGCHDTRSSSSCAACKLLKRRCTPTCIFAPYFRSDEPKKFAKVHKVFGASNVSKILTEV 60
           MRGCHDTRSSSSCAACKLLKRRCTPTCIFAPYFRSDEPKKFAKVHKVFGASNVSKILTEV
Sbjct: 1   MRGCHDTRSSSSCAACKLLKRRCTPTCIFAPYFRSDEPKKFAKVHKVFGASNVSKILTEV 60

Query: 61  PEEQREDTVNSLAYEAEARLRDPVYGCIGAIALLQTKLAELQHDLALAKARLARYAAANN 120
           PEEQREDTVNSLAYEAEARLRDPVYGCIGAIALLQTKLAELQHDLALAKARLARYAAANN
Sbjct: 61  PEEQREDTVNSLAYEAEARLRDPVYGCIGAIALLQTKLAELQHDLALAKARLARYAAANN 120

Query: 121 NNTSSTSLGVLENCVVNMSYGGLSFSGQSSDDISQYGFLCDFTHFPYPFQA 172
           NNTSSTSLGVLENCVVNMSYGGLSFSGQSSDDISQYGFLCDFTHFPYPFQA
Sbjct: 121 NNTSSTSLGVLENCVVNMSYGGLSFSGQSSDDISQYGFLCDFTHFPYPFQA 171

[Close]

BLAST of Carg05968 vs. NCBI nr
Match: XP_022953486.1 (LOB domain-containing protein 21-like [Cucurbita moschata])

HSP 1 Score: 342.0 bits (876), Expect = 2.9e-90
Identity = 170/171 (99.42%), Postives = 171/171 (100.00%), Query Frame = 0


Query: 1   MRGCHDTRSSSSCAACKLLKRRCTPTCIFAPYFRSDEPKKFAKVHKVFGASNVSKILTEV 60
           MRGCHDTRSSSSCAACKLLKRRCTPTCIFAPYFRSDEPKKFAKVHKVFGASNVSKILTEV
Sbjct: 1   MRGCHDTRSSSSCAACKLLKRRCTPTCIFAPYFRSDEPKKFAKVHKVFGASNVSKILTEV 60

Query: 61  PEEQREDTVNSLAYEAEARLRDPVYGCIGAIALLQTKLAELQHDLALAKARLARYAAANN 120
           PEEQREDTVNSLAYEAEARLRDPVYGCIGAIALLQTK+AELQHDLALAKARLARYAAANN
Sbjct: 61  PEEQREDTVNSLAYEAEARLRDPVYGCIGAIALLQTKMAELQHDLALAKARLARYAAANN 120

Query: 121 NNTSSTSLGVLENCVVNMSYGGLSFSGQSSDDISQYGFLCDFTHFPYPFQA 172
           NNTSSTSLGVLENCVVNMSYGGLSFSGQSSDDISQYGFLCDFTHFPYPFQA
Sbjct: 121 NNTSSTSLGVLENCVVNMSYGGLSFSGQSSDDISQYGFLCDFTHFPYPFQA 171

[Close]

BLAST of Carg05968 vs. NCBI nr
Match: XP_023521654.1 (LOB domain-containing protein 21-like isoform X1 [Cucurbita pepo subsp. pepo] >XP_023521655.1 LOB domain-containing protein 21-like isoform X2 [Cucurbita pepo subsp. pepo] >XP_023535900.1 LOB domain-containing protein 21-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 336.3 bits (861), Expect = 1.6e-88
Identity = 167/171 (97.66%), Postives = 170/171 (99.42%), Query Frame = 0


Query: 1   MRGCHDTRSSSSCAACKLLKRRCTPTCIFAPYFRSDEPKKFAKVHKVFGASNVSKILTEV 60
           MRGCHDTRSSSSCAACKLLKRRCTPTCIFAPYFRSDEPKKFAKVHKVFGASNVSKILTEV
Sbjct: 1   MRGCHDTRSSSSCAACKLLKRRCTPTCIFAPYFRSDEPKKFAKVHKVFGASNVSKILTEV 60

Query: 61  PEEQREDTVNSLAYEAEARLRDPVYGCIGAIALLQTKLAELQHDLALAKARLARYAAANN 120
           PEEQREDTVNSLAYEAEARLRDPVYGCIGAIALLQTK+AELQHDLALAKARLARYAAANN
Sbjct: 61  PEEQREDTVNSLAYEAEARLRDPVYGCIGAIALLQTKMAELQHDLALAKARLARYAAANN 120

Query: 121 NNTSSTSLGVLENCVVNMSYGGLSFSGQSSDDISQYGFLCDFTHFPYPFQA 172
           N +SSTSLGVLENCVVNMSYGGLSFSGQSSDDISQYG+LCDFTHFPYPFQA
Sbjct: 121 NYSSSTSLGVLENCVVNMSYGGLSFSGQSSDDISQYGYLCDFTHFPYPFQA 171

[Close]

BLAST of Carg05968 vs. NCBI nr
Match: XP_022990592.1 (LOB domain-containing protein 21-like [Cucurbita maxima])

HSP 1 Score: 330.9 bits (847), Expect = 6.6e-87
Identity = 167/177 (94.35%), Postives = 171/177 (96.61%), Query Frame = 0


Query: 1   MRGCHDTRSSSSCAACKLLKRRCTPTCIFAPYFRSDEPKKFAKVHKVFGASNVSKILTEV 60
           MRGCHDTRSSSSCAACKLLKRRCTPTCIFAPYFRSDEPKKFAKVHKVFGASNVSKILTEV
Sbjct: 1   MRGCHDTRSSSSCAACKLLKRRCTPTCIFAPYFRSDEPKKFAKVHKVFGASNVSKILTEV 60

Query: 61  PEEQREDTVNSLAYEAEARLRDPVYGCIGAIALLQTKLAELQHDLALAKARLARYAAANN 120
           PEEQREDTVNSLAYEAEARLRDPVYGCIGAIALLQTK+AELQHDLALAKARLARYAAANN
Sbjct: 61  PEEQREDTVNSLAYEAEARLRDPVYGCIGAIALLQTKMAELQHDLALAKARLARYAAANN 120

Query: 121 NNT------SSTSLGVLENCVVNMSYGGLSFSGQSSDDISQYGFLCDFTHFPYPFQA 172
           NNT      SS+SLGVLE+CVVNMSYGGLSFSGQSSDDISQYG+LCDFTHFPYPFQA
Sbjct: 121 NNTSSSSSSSSSSLGVLESCVVNMSYGGLSFSGQSSDDISQYGYLCDFTHFPYPFQA 177

[Close]

BLAST of Carg05968 vs. NCBI nr
Match: XP_023549827.1 (LOB domain-containing protein 21-like isoform X2 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 301.6 bits (771), Expect = 4.3e-78
Identity = 152/173 (87.86%), Postives = 164/173 (94.80%), Query Frame = 0


Query: 1   MRGCHDTRSSSSCAACKLLKRRCTPTCIFAPYFRSDEPKKFAKVHKVFGASNVSKILTEV 60
           MRGCH+TRSSSSCAACKLLKRRCTPTCIFAPYFRSDEPKKFAKVHKVFGASNVSKILTEV
Sbjct: 1   MRGCHETRSSSSCAACKLLKRRCTPTCIFAPYFRSDEPKKFAKVHKVFGASNVSKILTEV 60

Query: 61  PEEQREDTVNSLAYEAEARLRDPVYGCIGAIALLQTKLAELQHDLALAKARLARYAAANN 120
           PEEQREDTVNSLAYEAEARLRDPVYGCIGAIALLQTK+ ELQHDLA+AKARLARYA +++
Sbjct: 61  PEEQREDTVNSLAYEAEARLRDPVYGCIGAIALLQTKMVELQHDLAIAKARLARYADSDH 120

Query: 121 N-NTSSTSLGVLENCVVNMSYGGLSF-SGQSSDDISQYGFLCDFTHFPYPFQA 172
           N N+ S+SLGVLENCVVNM YGGLS  +GQSS  I+QYG+LCDFTHFPYPF+A
Sbjct: 121 NYNSFSSSLGVLENCVVNMPYGGLSIAAGQSSSAITQYGYLCDFTHFPYPFKA 173

[Close]

BLAST of Carg05968 vs. ExPASy Swiss-Prot
Match: Q9SRL8 (LOB domain-containing protein 21 OS=Arabidopsis thaliana OX=3702 GN=LBD21 PE=2 SV=1)

HSP 1 Score: 186.0 bits (471), Expect = 3.5e-46
Identity = 94/124 (75.81%), Postives = 106/124 (85.48%), Query Frame = 0


Query: 1   MRGCHDTRSSSSCAACKLLKRRCTPTCIFAPYFRSDEPKKFAKVHKVFGASNVSKILTEV 60
           MRG H+ RSSSSCAACKLLKRRCTPTCIFAPYFRS +   FAKVHKVFGASNVSK+L EV
Sbjct: 1   MRG-HEPRSSSSCAACKLLKRRCTPTCIFAPYFRSSDLITFAKVHKVFGASNVSKLLGEV 60

Query: 61  PEEQREDTVNSLAYEAEARLRDPVYGCIGAIALLQTKLAELQHDLALAKARLARYAAANN 120
           PEEQR++TVNSLAYEAE RL+DPVYGCIGAIA LQ K+ ELQHDLA+A+ RL  ++  NN
Sbjct: 61  PEEQRQETVNSLAYEAEVRLKDPVYGCIGAIASLQKKMLELQHDLAVARTRLLAHSGVNN 120

Query: 121 NNTS 125
           +  S
Sbjct: 121 SQVS 123

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BLAST of Carg05968 vs. ExPASy Swiss-Prot
Match: O04479 (Protein ASYMMETRIC LEAVES 2 OS=Arabidopsis thaliana OX=3702 GN=AS2 PE=1 SV=1)

HSP 1 Score: 149.8 bits (377), Expect = 2.8e-35
Identity = 72/122 (59.02%), Postives = 94/122 (77.05%), Query Frame = 0


Query: 9   SSSSCAACKLLKRRCTPTCIFAPYFRSDEPKKFAKVHKVFGASNVSKILTEVPEEQREDT 68
           ++S CAACK L+R+C P C+FAPYF  D+P+KFA VHKVFGASNV+K+L E+   QRED 
Sbjct: 6   TNSPCAACKFLRRKCQPECVFAPYFPPDQPQKFANVHKVFGASNVTKLLNELHPSQREDA 65

Query: 69  VNSLAYEAEARLRDPVYGCIGAIALLQTKLAELQHDLALAKARLARYAAANNNNTSSTSL 128
           VNSLAYEA+ RLRDPVYGC+G I+LLQ +L +LQ DL+ AK+ L++Y +      +  SL
Sbjct: 66  VNSLAYEADMRLRDPVYGCVGVISLLQHQLRQLQIDLSCAKSELSKYQSLGILAATHQSL 125

Query: 129 GV 131
           G+
Sbjct: 126 GI 127

[Close]

BLAST of Carg05968 vs. ExPASy Swiss-Prot
Match: Q9FKZ3 (LOB domain-containing protein 36 OS=Arabidopsis thaliana OX=3702 GN=LBD36 PE=2 SV=1)

HSP 1 Score: 149.1 bits (375), Expect = 4.7e-35
Identity = 71/107 (66.36%), Postives = 85/107 (79.44%), Query Frame = 0


Query: 9   SSSSCAACKLLKRRCTPTCIFAPYFRSDEPKKFAKVHKVFGASNVSKILTEVPEEQREDT 68
           SSS CAACK L+R+CT  C+FAPYF  D+P+KFA VHKVFGASNV+K+L E+   QRED 
Sbjct: 4   SSSPCAACKFLRRKCTQECVFAPYFPPDQPQKFAFVHKVFGASNVAKLLNELASNQREDA 63

Query: 69  VNSLAYEAEARLRDPVYGCIGAIALLQTKLAELQHDLALAKARLARY 116
           VNSL YEAEARLRDPVYGC+G I++LQ +L ++ HDL  AK  LA Y
Sbjct: 64  VNSLFYEAEARLRDPVYGCVGLISILQHRLKQVNHDLENAKKELATY 110

[Close]

BLAST of Carg05968 vs. ExPASy Swiss-Prot
Match: Q8L8Q3 (LOB domain-containing protein 25 OS=Arabidopsis thaliana OX=3702 GN=LBD25 PE=2 SV=3)

HSP 1 Score: 147.1 bits (370), Expect = 1.8e-34
Identity = 72/117 (61.54%), Postives = 88/117 (75.21%), Query Frame = 0


Query: 9   SSSSCAACKLLKRRCTPTCIFAPYFRSDEPKKFAKVHKVFGASNVSKILTEVPEEQREDT 68
           ++S CAACK L+R+CT  C+FAPYF  +EP KFA VH++FGASNVSKIL EV   QRED 
Sbjct: 36  TNSPCAACKFLRRKCTSDCVFAPYFPPEEPTKFANVHRIFGASNVSKILHEVAPHQREDA 95

Query: 69  VNSLAYEAEARLRDPVYGCIGAIALLQTKLAELQHDLALAKARLARYAAANNNNTSS 126
           VNSLAYEAEARL+DPVYGC+GAI++LQ ++  LQ +L    A L RYA      T+S
Sbjct: 96  VNSLAYEAEARLKDPVYGCVGAISVLQRQVLRLQRELEETNADLMRYAGCLGGETTS 152

[Close]

BLAST of Carg05968 vs. ExPASy Swiss-Prot
Match: Q32SG3 (LOB domain-containing protein 6 OS=Zea mays OX=4577 GN=LBD6 PE=1 SV=1)

HSP 1 Score: 145.6 bits (366), Expect = 5.2e-34
Identity = 71/121 (58.68%), Postives = 89/121 (73.55%), Query Frame = 0


Query: 9   SSSSCAACKLLKRRCTPTCIFAPYFRSDEPKKFAKVHKVFGASNVSKILTEVPEEQREDT 68
           + S CAACK L+R+C P C+FAPYF  D P+KF  VH+VFGASNV+K+L E+   QRED 
Sbjct: 30  TGSPCAACKFLRRKCQPDCVFAPYFPPDNPQKFVHVHRVFGASNVTKLLNELHPFQREDA 89

Query: 69  VNSLAYEAEARLRDPVYGCIGAIALLQTKLAELQHDLALAKARLARYAAANNNNTSSTSL 128
           VNSLAYEA+ RLRDPVYGC+G I++LQ  L +LQ DLA AK  L++Y AA   + S+   
Sbjct: 90  VNSLAYEADMRLRDPVYGCVGVISILQHNLRQLQQDLARAKYELSKYQAAAAASASTAPT 149

Query: 129 G 130
           G
Sbjct: 150 G 150

[Close]

BLAST of Carg05968 vs. ExPASy TrEMBL
Match: A0A6J1GN41 (LOB domain-containing protein 21-like OS=Cucurbita moschata OX=3662 GN=LOC111456020 PE=3 SV=1)

HSP 1 Score: 342.0 bits (876), Expect = 1.4e-90
Identity = 170/171 (99.42%), Postives = 171/171 (100.00%), Query Frame = 0


Query: 1   MRGCHDTRSSSSCAACKLLKRRCTPTCIFAPYFRSDEPKKFAKVHKVFGASNVSKILTEV 60
           MRGCHDTRSSSSCAACKLLKRRCTPTCIFAPYFRSDEPKKFAKVHKVFGASNVSKILTEV
Sbjct: 1   MRGCHDTRSSSSCAACKLLKRRCTPTCIFAPYFRSDEPKKFAKVHKVFGASNVSKILTEV 60

Query: 61  PEEQREDTVNSLAYEAEARLRDPVYGCIGAIALLQTKLAELQHDLALAKARLARYAAANN 120
           PEEQREDTVNSLAYEAEARLRDPVYGCIGAIALLQTK+AELQHDLALAKARLARYAAANN
Sbjct: 61  PEEQREDTVNSLAYEAEARLRDPVYGCIGAIALLQTKMAELQHDLALAKARLARYAAANN 120

Query: 121 NNTSSTSLGVLENCVVNMSYGGLSFSGQSSDDISQYGFLCDFTHFPYPFQA 172
           NNTSSTSLGVLENCVVNMSYGGLSFSGQSSDDISQYGFLCDFTHFPYPFQA
Sbjct: 121 NNTSSTSLGVLENCVVNMSYGGLSFSGQSSDDISQYGFLCDFTHFPYPFQA 171

[Close]

BLAST of Carg05968 vs. ExPASy TrEMBL
Match: A0A6J1JJ75 (LOB domain-containing protein 21-like OS=Cucurbita maxima OX=3661 GN=LOC111487426 PE=3 SV=1)

HSP 1 Score: 330.9 bits (847), Expect = 3.2e-87
Identity = 167/177 (94.35%), Postives = 171/177 (96.61%), Query Frame = 0


Query: 1   MRGCHDTRSSSSCAACKLLKRRCTPTCIFAPYFRSDEPKKFAKVHKVFGASNVSKILTEV 60
           MRGCHDTRSSSSCAACKLLKRRCTPTCIFAPYFRSDEPKKFAKVHKVFGASNVSKILTEV
Sbjct: 1   MRGCHDTRSSSSCAACKLLKRRCTPTCIFAPYFRSDEPKKFAKVHKVFGASNVSKILTEV 60

Query: 61  PEEQREDTVNSLAYEAEARLRDPVYGCIGAIALLQTKLAELQHDLALAKARLARYAAANN 120
           PEEQREDTVNSLAYEAEARLRDPVYGCIGAIALLQTK+AELQHDLALAKARLARYAAANN
Sbjct: 61  PEEQREDTVNSLAYEAEARLRDPVYGCIGAIALLQTKMAELQHDLALAKARLARYAAANN 120

Query: 121 NNT------SSTSLGVLENCVVNMSYGGLSFSGQSSDDISQYGFLCDFTHFPYPFQA 172
           NNT      SS+SLGVLE+CVVNMSYGGLSFSGQSSDDISQYG+LCDFTHFPYPFQA
Sbjct: 121 NNTSSSSSSSSSSLGVLESCVVNMSYGGLSFSGQSSDDISQYGYLCDFTHFPYPFQA 177

[Close]

BLAST of Carg05968 vs. ExPASy TrEMBL
Match: A0A6J1JS05 (LOB domain-containing protein 21-like OS=Cucurbita maxima OX=3661 GN=LOC111489259 PE=3 SV=1)

HSP 1 Score: 296.6 bits (758), Expect = 6.7e-77
Identity = 151/182 (82.97%), Postives = 164/182 (90.11%), Query Frame = 0


Query: 1   MRGCHDTRSSSSCAACKLLKRRCTPTCIFAPYFRSDEPKKFAKVHKVFGASNVSKILTEV 60
           MRGCH+TRSSSSCAACKLLKRRCTPTCIFAPYFRSDEPKKFAKVHKVFGASNVSKILTEV
Sbjct: 1   MRGCHETRSSSSCAACKLLKRRCTPTCIFAPYFRSDEPKKFAKVHKVFGASNVSKILTEV 60

Query: 61  PEEQREDTVNSLAYEAEARLRDPVYGCIGAIALLQTKLAELQHDLALAKARLARYAAANN 120
           PEEQREDTVNSLAYEAEARLRDPVYGCIGAIALLQTK+ ELQHDLA+AKARLARYA +++
Sbjct: 61  PEEQREDTVNSLAYEAEARLRDPVYGCIGAIALLQTKMVELQHDLAIAKARLARYADSDH 120

Query: 121 N----------NTSSTSLGVLENCVVNMSYGGLSF-SGQSSDDISQYGFLCDFTHFPYPF 172
           N          ++S +SLGVLENCVVNM YGGLS  +GQSS  I+QYG+LCDFTHFPYPF
Sbjct: 121 NYNTFSSSSSSSSSPSSLGVLENCVVNMPYGGLSIAAGQSSSAITQYGYLCDFTHFPYPF 180

[Close]

BLAST of Carg05968 vs. ExPASy TrEMBL
Match: A0A5A7UN14 (LOB domain-containing protein 21-like OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold43052G001800 PE=3 SV=1)

HSP 1 Score: 296.6 bits (758), Expect = 6.7e-77
Identity = 151/173 (87.28%), Postives = 160/173 (92.49%), Query Frame = 0


Query: 1   MRGCHDTRSSSSCAACKLLKRRCTPTCIFAPYFRSDEPKKFAKVHKVFGASNVSKILTEV 60
           MRG H+TRSSSSCAACKLLKRRC PTCIFAPYFRSDEPKKFAKVHKVFGASNVSKILTEV
Sbjct: 1   MRGWHETRSSSSCAACKLLKRRCIPTCIFAPYFRSDEPKKFAKVHKVFGASNVSKILTEV 60

Query: 61  PEEQREDTVNSLAYEAEARLRDPVYGCIGAIALLQTKLAELQHDLALAKARLARYAAANN 120
           PEEQREDTVNSLAYEAEARLRDPVYGCIGAIALLQTK+ ELQHDLALAKARLARY  A+N
Sbjct: 61  PEEQREDTVNSLAYEAEARLRDPVYGCIGAIALLQTKMVELQHDLALAKARLARY--AHN 120

Query: 121 NNTSSTSLGVLENCVVNMSYGGLSFSGQ--SSDDISQYGFLCDFTHFPYPFQA 172
           N +SS+S    ENCVVNMSYGGLSFS +  SSDDI+QYG+LCDFTHFPYPF+A
Sbjct: 121 NTSSSSSSSCAENCVVNMSYGGLSFSAEQSSSDDITQYGYLCDFTHFPYPFKA 171

[Close]

BLAST of Carg05968 vs. ExPASy TrEMBL
Match: A0A6J1FKB9 (LOB domain-containing protein 21-like OS=Cucurbita moschata OX=3662 GN=LOC111445010 PE=3 SV=1)

HSP 1 Score: 295.8 bits (756), Expect = 1.1e-76
Identity = 150/179 (83.80%), Postives = 164/179 (91.62%), Query Frame = 0


Query: 1   MRGCHDTRSSSSCAACKLLKRRCTPTCIFAPYFRSDEPKKFAKVHKVFGASNVSKILTEV 60
           MRGCH+TRSSSSCAACKLLKRRCTPTCIFAPYFRSDEPKKFAKVHKVFGASNVSKILTEV
Sbjct: 1   MRGCHETRSSSSCAACKLLKRRCTPTCIFAPYFRSDEPKKFAKVHKVFGASNVSKILTEV 60

Query: 61  PEEQREDTVNSLAYEAEARLRDPVYGCIGAIALLQTKLAELQHDLALAKARLARYAAANN 120
           PEEQREDTVNSLAYEAEARLRDPVYGCIGAIALLQTK+ ELQHDLA+AKARLARYA +++
Sbjct: 61  PEEQREDTVNSLAYEAEARLRDPVYGCIGAIALLQTKMVELQHDLAIAKARLARYADSDH 120

Query: 121 N-------NTSSTSLGVLENCVVNMSYGGLSF-SGQSSDDISQYGFLCDFTHFPYPFQA 172
           N       ++SS+S+GVLENCVVNM YGGLS  +GQSS  I+QYG+LCDFTHFPYP +A
Sbjct: 121 NYSTFSSSSSSSSSMGVLENCVVNMPYGGLSIAAGQSSSAITQYGYLCDFTHFPYPSKA 179

[Close]

BLAST of Carg05968 vs. TAIR 10
Match: AT3G11090.1 (LOB domain-containing protein 21 )

HSP 1 Score: 186.0 bits (471), Expect = 2.5e-47
Identity = 94/124 (75.81%), Postives = 106/124 (85.48%), Query Frame = 0


Query: 1   MRGCHDTRSSSSCAACKLLKRRCTPTCIFAPYFRSDEPKKFAKVHKVFGASNVSKILTEV 60
           MRG H+ RSSSSCAACKLLKRRCTPTCIFAPYFRS +   FAKVHKVFGASNVSK+L EV
Sbjct: 1   MRG-HEPRSSSSCAACKLLKRRCTPTCIFAPYFRSSDLITFAKVHKVFGASNVSKLLGEV 60

Query: 61  PEEQREDTVNSLAYEAEARLRDPVYGCIGAIALLQTKLAELQHDLALAKARLARYAAANN 120
           PEEQR++TVNSLAYEAE RL+DPVYGCIGAIA LQ K+ ELQHDLA+A+ RL  ++  NN
Sbjct: 61  PEEQRQETVNSLAYEAEVRLKDPVYGCIGAIASLQKKMLELQHDLAVARTRLLAHSGVNN 120

Query: 121 NNTS 125
           +  S
Sbjct: 121 SQVS 123

[Close]

BLAST of Carg05968 vs. TAIR 10
Match: AT1G65620.1 (Lateral organ boundaries (LOB) domain family protein )

HSP 1 Score: 149.8 bits (377), Expect = 2.0e-36
Identity = 72/122 (59.02%), Postives = 94/122 (77.05%), Query Frame = 0


Query: 9   SSSSCAACKLLKRRCTPTCIFAPYFRSDEPKKFAKVHKVFGASNVSKILTEVPEEQREDT 68
           ++S CAACK L+R+C P C+FAPYF  D+P+KFA VHKVFGASNV+K+L E+   QRED 
Sbjct: 6   TNSPCAACKFLRRKCQPECVFAPYFPPDQPQKFANVHKVFGASNVTKLLNELHPSQREDA 65

Query: 69  VNSLAYEAEARLRDPVYGCIGAIALLQTKLAELQHDLALAKARLARYAAANNNNTSSTSL 128
           VNSLAYEA+ RLRDPVYGC+G I+LLQ +L +LQ DL+ AK+ L++Y +      +  SL
Sbjct: 66  VNSLAYEADMRLRDPVYGCVGVISLLQHQLRQLQIDLSCAKSELSKYQSLGILAATHQSL 125

Query: 129 GV 131
           G+
Sbjct: 126 GI 127

[Close]

BLAST of Carg05968 vs. TAIR 10
Match: AT1G65620.2 (Lateral organ boundaries (LOB) domain family protein )

HSP 1 Score: 149.8 bits (377), Expect = 2.0e-36
Identity = 72/122 (59.02%), Postives = 94/122 (77.05%), Query Frame = 0


Query: 9   SSSSCAACKLLKRRCTPTCIFAPYFRSDEPKKFAKVHKVFGASNVSKILTEVPEEQREDT 68
           ++S CAACK L+R+C P C+FAPYF  D+P+KFA VHKVFGASNV+K+L E+   QRED 
Sbjct: 6   TNSPCAACKFLRRKCQPECVFAPYFPPDQPQKFANVHKVFGASNVTKLLNELHPSQREDA 65

Query: 69  VNSLAYEAEARLRDPVYGCIGAIALLQTKLAELQHDLALAKARLARYAAANNNNTSSTSL 128
           VNSLAYEA+ RLRDPVYGC+G I+LLQ +L +LQ DL+ AK+ L++Y +      +  SL
Sbjct: 66  VNSLAYEADMRLRDPVYGCVGVISLLQHQLRQLQIDLSCAKSELSKYQSLGILAATHQSL 125

Query: 129 GV 131
           G+
Sbjct: 126 GI 127

[Close]

BLAST of Carg05968 vs. TAIR 10
Match: AT1G65620.3 (Lateral organ boundaries (LOB) domain family protein )

HSP 1 Score: 149.8 bits (377), Expect = 2.0e-36
Identity = 72/122 (59.02%), Postives = 94/122 (77.05%), Query Frame = 0


Query: 9   SSSSCAACKLLKRRCTPTCIFAPYFRSDEPKKFAKVHKVFGASNVSKILTEVPEEQREDT 68
           ++S CAACK L+R+C P C+FAPYF  D+P+KFA VHKVFGASNV+K+L E+   QRED 
Sbjct: 6   TNSPCAACKFLRRKCQPECVFAPYFPPDQPQKFANVHKVFGASNVTKLLNELHPSQREDA 65

Query: 69  VNSLAYEAEARLRDPVYGCIGAIALLQTKLAELQHDLALAKARLARYAAANNNNTSSTSL 128
           VNSLAYEA+ RLRDPVYGC+G I+LLQ +L +LQ DL+ AK+ L++Y +      +  SL
Sbjct: 66  VNSLAYEADMRLRDPVYGCVGVISLLQHQLRQLQIDLSCAKSELSKYQSLGILAATHQSL 125

Query: 129 GV 131
           G+
Sbjct: 126 GI 127

[Close]

BLAST of Carg05968 vs. TAIR 10
Match: AT1G65620.4 (Lateral organ boundaries (LOB) domain family protein )

HSP 1 Score: 149.8 bits (377), Expect = 2.0e-36
Identity = 72/122 (59.02%), Postives = 94/122 (77.05%), Query Frame = 0


Query: 9   SSSSCAACKLLKRRCTPTCIFAPYFRSDEPKKFAKVHKVFGASNVSKILTEVPEEQREDT 68
           ++S CAACK L+R+C P C+FAPYF  D+P+KFA VHKVFGASNV+K+L E+   QRED 
Sbjct: 6   TNSPCAACKFLRRKCQPECVFAPYFPPDQPQKFANVHKVFGASNVTKLLNELHPSQREDA 65

Query: 69  VNSLAYEAEARLRDPVYGCIGAIALLQTKLAELQHDLALAKARLARYAAANNNNTSSTSL 128
           VNSLAYEA+ RLRDPVYGC+G I+LLQ +L +LQ DL+ AK+ L++Y +      +  SL
Sbjct: 66  VNSLAYEADMRLRDPVYGCVGVISLLQHQLRQLQIDLSCAKSELSKYQSLGILAATHQSL 125

Query: 129 GV 131
           G+
Sbjct: 126 GI 127

The following BLAST results are available for this feature:

BLAST of Carg05968 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG6602609.1	1.7e-90	100.00	LOB domain-containing protein 21, partial [Cucurbita argyrosperma subsp. sororia...	[more]
XP_022953486.1	2.9e-90	99.42	LOB domain-containing protein 21-like [Cucurbita moschata]	[more]
XP_023521654.1	1.6e-88	97.66	LOB domain-containing protein 21-like isoform X1 [Cucurbita pepo subsp. pepo] >X...	[more]
XP_022990592.1	6.6e-87	94.35	LOB domain-containing protein 21-like [Cucurbita maxima]	[more]
XP_023549827.1	4.3e-78	87.86	LOB domain-containing protein 21-like isoform X2 [Cucurbita pepo subsp. pepo]	[more]

BLAST of Carg05968 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9SRL8	3.5e-46	75.81	LOB domain-containing protein 21 OS=Arabidopsis thaliana OX=3702 GN=LBD21 PE=2 S...	[more]
O04479	2.8e-35	59.02	Protein ASYMMETRIC LEAVES 2 OS=Arabidopsis thaliana OX=3702 GN=AS2 PE=1 SV=1	[more]
Q9FKZ3	4.7e-35	66.36	LOB domain-containing protein 36 OS=Arabidopsis thaliana OX=3702 GN=LBD36 PE=2 S...	[more]
Q8L8Q3	1.8e-34	61.54	LOB domain-containing protein 25 OS=Arabidopsis thaliana OX=3702 GN=LBD25 PE=2 S...	[more]
Q32SG3	5.2e-34	58.68	LOB domain-containing protein 6 OS=Zea mays OX=4577 GN=LBD6 PE=1 SV=1	[more]

BLAST of Carg05968 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1GN41	1.4e-90	99.42	LOB domain-containing protein 21-like OS=Cucurbita moschata OX=3662 GN=LOC111456...	[more]
A0A6J1JJ75	3.2e-87	94.35	LOB domain-containing protein 21-like OS=Cucurbita maxima OX=3661 GN=LOC11148742...	[more]
A0A6J1JS05	6.7e-77	82.97	LOB domain-containing protein 21-like OS=Cucurbita maxima OX=3661 GN=LOC11148925...	[more]
A0A5A7UN14	6.7e-77	87.28	LOB domain-containing protein 21-like OS=Cucumis melo var. makuwa OX=1194695 GN=...	[more]
A0A6J1FKB9	1.1e-76	83.80	LOB domain-containing protein 21-like OS=Cucurbita moschata OX=3662 GN=LOC111445...	[more]

BLAST of Carg05968 vs. TAIR 10


Match Name	E-value	Identity	Description
AT3G11090.1	2.5e-47	75.81	LOB domain-containing protein 21	[more]
AT1G65620.1	2.0e-36	59.02	Lateral organ boundaries (LOB) domain family protein	[more]
AT1G65620.2	2.0e-36	59.02	Lateral organ boundaries (LOB) domain family protein	[more]
AT1G65620.3	2.0e-36	59.02	Lateral organ boundaries (LOB) domain family protein	[more]
AT1G65620.4	2.0e-36	59.02	Lateral organ boundaries (LOB) domain family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Silver-seed gourd (SMH-JMG-627) v2
Date Performed: 2021-10-25

Position :

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x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 91..118
None	No IPR available	PANTHER	PTHR31301:SF24	LOB DOMAIN-CONTAINING PROTEIN 21	coord: 1..149
None	No IPR available	PANTHER	PTHR31301	LOB DOMAIN-CONTAINING PROTEIN 4-RELATED	coord: 1..149
IPR004883	Lateral organ boundaries, LOB	PFAM	PF03195	LOB	coord: 12..109 e-value: 1.5E-39 score: 134.5
IPR004883	Lateral organ boundaries, LOB	PROSITE	PS50891	LOB	coord: 11..112 score: 25.595442

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Carg05968-RA	Carg05968-RA	mRNA