Carg05960 (gene) Silver-seed gourd (SMH-JMG-627) v2

Overview


Name	Carg05960
Type	gene
Organism	Cucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
Description	DCD domain-containing protein
Location	Carg_Chr04: 21301392 .. 21302544 (+)
RNA-Seq Expression	Carg05960
Synteny	Carg05960

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCGGTGGAAGGAAGACTGAGTCCTTACTTTGCAGGAAAAATCCCTACCTCCTTGGACGTAAGATGGCAGTGTGATCTCAAGGAATGTCGGTAAGAGTAAACAGGCTGGAGTTATGTACAATTAGATTGTTCTTCAGTTATGTTTTCAAGCATATTTGTTCATCCTCAACCTCTGTAATAACTCGCATTGCAACTCTTATTGTTTTAGACAAGTTCTATTTGATCATTCGCTGAGGATAATTCGTTAAGCATTATTAGCGTACAGCATGTATGTTTATTATCGATCGGAAACTGATTTTTAAGGCCTTTTACTTTTTCGTGGATTTTTCTTCAATCACTGATGGCGGTGGAAGGAAGACTGAGTCCTTTACTTTGCAGGAAAAATCCCTACCTCCTTGGACGTAAGATGGCAGTGTGATCTCAAGGAATGTCGGTAAGAGTAAACAGGCTGGAGTTATGTACAATTAGATTTTTCTTCAGTTATGTTTTCAAGCATATTTGTTCATCCTCAACCTCTGTAATAACTCGCATTGCAACTCTTATTGTTTTAGACAAGTTCTATTTGATCATTCGCTGAGGATAATTCGTTAAGCATTATTAGCGTACAGCATGTATGTTTATTATCGATCGGAAACTGATTTTTAAGGCCTTTTACTTTTTCGTGGATTTTTCTTCAATCGCTGATGGCGGTGGAAGGAAGACCGAGTCCTTCACTTTGCAGGAAAAAGCCCTACCTCCTTGGACGTAAAATGGCAGTGTGATCTCAAGGAATCTCGGAAAGAGTAAACAGGCTGGAGTTATTTTTGTTGCTAGCACAACACAATGCAAGAATGTCTTTTCGAACAATTGTTTGGTTTGCTTACCAGTACCTTTGCTGATCAACCTTTTATTTTCAAGAAATTTACGGTTCTCTTTTCTCTCATTTATGCGATATCAAATGGATATGTGATGCTTTAACTTCTCCAATAGGATTTCCGGCTTCGCAATTCTAATATGTACGAAATATCGATCCTGGTTTGCCTCTGTTTCTCATCAACTACAGTTTTAGGAAGTTTCATGGTGTATTTGAGGCTACTAGCCAAGGTGACCAGAATATTAGTCCATATGCTTGGACTGCTGATGGCATGGATTATACTCCATATTCTGCACAG

mRNA sequence

ATGGCGGTGGAAGGAAGACTGAGTCCTTACTTTGCAGGAAAAATCCCTACCTCCTTGGACGTAAGATGGCAGTGTGATCTCAAGGAATGTCGTTTTAGGAAGTTTCATGGTGTATTTGAGGCTACTAGCCAAGGTGACCAGAATATTAGTCCATATGCTTGGACTGCTGATGGCATGGATTATACTCCATATTCTGCACAG

Coding sequence (CDS)

ATGGCGGTGGAAGGAAGACTGAGTCCTTACTTTGCAGGAAAAATCCCTACCTCCTTGGACGTAAGATGGCAGTGTGATCTCAAGGAATGTCGTTTTAGGAAGTTTCATGGTGTATTTGAGGCTACTAGCCAAGGTGACCAGAATATTAGTCCATATGCTTGGACTGCTGATGGCATGGATTATACTCCATATTCTGCACAG

Protein sequence

MAVEGRLSPYFAGKIPTSLDVRWQCDLKECRFRKFHGVFEATSQGDQNISPYAWTADGMDYTPYSAQ

Homology

[Close]

BLAST of Carg05960 vs. NCBI nr
Match: KAG7033283.1 (hypothetical protein SDJN02_07337, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 150.2 bits (378), Expect = 6.3e-33
Identity = 67/67 (100.00%), Postives = 67/67 (100.00%), Query Frame = 0


Query: 1  MAVEGRLSPYFAGKIPTSLDVRWQCDLKECRFRKFHGVFEATSQGDQNISPYAWTADGMD 60
          MAVEGRLSPYFAGKIPTSLDVRWQCDLKECRFRKFHGVFEATSQGDQNISPYAWTADGMD
Sbjct: 1  MAVEGRLSPYFAGKIPTSLDVRWQCDLKECRFRKFHGVFEATSQGDQNISPYAWTADGMD 60

Query: 61 YTPYSAQ 68
          YTPYSAQ
Sbjct: 61 YTPYSAQ 67

[Close]

BLAST of Carg05960 vs. NCBI nr
Match: KAG6602604.1 (hypothetical protein SDJN03_07837, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 118.2 bits (295), Expect = 2.7e-23
Identity = 54/60 (90.00%), Postives = 56/60 (93.33%), Query Frame = 0


Query: 10 YFAGKIPTSLDVRWQCDLKECR--FRKFHGVFEATSQGDQNISPYAWTADGMDYTPYSAQ 68
          +FAGK PTSLDV+WQCDLKE R  FRKFHGVFEATSQGDQNISPYAWTADGMDYTPYSAQ
Sbjct: 8  HFAGKSPTSLDVKWQCDLKESRKDFRKFHGVFEATSQGDQNISPYAWTADGMDYTPYSAQ 67

[Close]

BLAST of Carg05960 vs. NCBI nr
Match: XP_038885976.1 (uncharacterized protein LOC120076281 [Benincasa hispida])

HSP 1 Score: 68.6 bits (166), Expect = 2.4e-08
Identity = 29/35 (82.86%), Postives = 31/35 (88.57%), Query Frame = 0


Query: 33  RKFHGVFEATSQGDQNISPYAWTADGMDYTPYSAQ 68
           RK HG+FEATS G+ NISPYAW ADGMDYTPYSAQ
Sbjct: 84  RKLHGIFEATSNGNLNISPYAWAADGMDYTPYSAQ 118

[Close]

BLAST of Carg05960 vs. NCBI nr
Match: XP_016899395.1 (PREDICTED: uncharacterized protein LOC103485594 isoform X3 [Cucumis melo])

HSP 1 Score: 66.2 bits (160), Expect = 1.2e-07
Identity = 28/35 (80.00%), Postives = 30/35 (85.71%), Query Frame = 0


Query: 33  RKFHGVFEATSQGDQNISPYAWTADGMDYTPYSAQ 68
           RK HG+FEAT  G  NISPYAWTADGMDYTP+SAQ
Sbjct: 84  RKLHGIFEATCNGTLNISPYAWTADGMDYTPFSAQ 118

[Close]

BLAST of Carg05960 vs. NCBI nr
Match: XP_008441487.1 (PREDICTED: ring canal kelch homolog isoform X1 [Cucumis melo] >KAA0054992.1 ring canal kelch-like protein isoform X1 [Cucumis melo var. makuwa])

HSP 1 Score: 66.2 bits (160), Expect = 1.2e-07
Identity = 28/35 (80.00%), Postives = 30/35 (85.71%), Query Frame = 0


Query: 33  RKFHGVFEATSQGDQNISPYAWTADGMDYTPYSAQ 68
           RK HG+FEAT  G  NISPYAWTADGMDYTP+SAQ
Sbjct: 84  RKLHGIFEATCNGTLNISPYAWTADGMDYTPFSAQ 118

[Close]

BLAST of Carg05960 vs. ExPASy TrEMBL
Match: A0A5A7UGQ1 (Ring canal kelch-like protein isoform X1 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold43052G001400 PE=4 SV=1)

HSP 1 Score: 66.2 bits (160), Expect = 5.8e-08
Identity = 28/35 (80.00%), Postives = 30/35 (85.71%), Query Frame = 0


Query: 33  RKFHGVFEATSQGDQNISPYAWTADGMDYTPYSAQ 68
           RK HG+FEAT  G  NISPYAWTADGMDYTP+SAQ
Sbjct: 84  RKLHGIFEATCNGTLNISPYAWTADGMDYTPFSAQ 118

[Close]

BLAST of Carg05960 vs. ExPASy TrEMBL
Match: A0A1S4DUJ9 (uncharacterized protein LOC103485594 isoform X3 OS=Cucumis melo OX=3656 GN=LOC103485594 PE=4 SV=1)

HSP 1 Score: 66.2 bits (160), Expect = 5.8e-08
Identity = 28/35 (80.00%), Postives = 30/35 (85.71%), Query Frame = 0


Query: 33  RKFHGVFEATSQGDQNISPYAWTADGMDYTPYSAQ 68
           RK HG+FEAT  G  NISPYAWTADGMDYTP+SAQ
Sbjct: 84  RKLHGIFEATCNGTLNISPYAWTADGMDYTPFSAQ 118

[Close]

BLAST of Carg05960 vs. ExPASy TrEMBL
Match: A0A1S3B4B6 (ring canal kelch homolog isoform X1 OS=Cucumis melo OX=3656 GN=LOC103485594 PE=4 SV=1)

HSP 1 Score: 66.2 bits (160), Expect = 5.8e-08
Identity = 28/35 (80.00%), Postives = 30/35 (85.71%), Query Frame = 0


Query: 33  RKFHGVFEATSQGDQNISPYAWTADGMDYTPYSAQ 68
           RK HG+FEAT  G  NISPYAWTADGMDYTP+SAQ
Sbjct: 84  RKLHGIFEATCNGTLNISPYAWTADGMDYTPFSAQ 118

[Close]

BLAST of Carg05960 vs. ExPASy TrEMBL
Match: A0A1S3B344 (uncharacterized protein LOC103485594 isoform X2 OS=Cucumis melo OX=3656 GN=LOC103485594 PE=4 SV=1)

HSP 1 Score: 66.2 bits (160), Expect = 5.8e-08
Identity = 28/35 (80.00%), Postives = 30/35 (85.71%), Query Frame = 0


Query: 33  RKFHGVFEATSQGDQNISPYAWTADGMDYTPYSAQ 68
           RK HG+FEAT  G  NISPYAWTADGMDYTP+SAQ
Sbjct: 84  RKLHGIFEATCNGTLNISPYAWTADGMDYTPFSAQ 118

[Close]

BLAST of Carg05960 vs. ExPASy TrEMBL
Match: A0A1S4DTS8 (uncharacterized protein LOC103485594 isoform X4 OS=Cucumis melo OX=3656 GN=LOC103485594 PE=4 SV=1)

HSP 1 Score: 66.2 bits (160), Expect = 5.8e-08
Identity = 28/35 (80.00%), Postives = 30/35 (85.71%), Query Frame = 0


Query: 33  RKFHGVFEATSQGDQNISPYAWTADGMDYTPYSAQ 68
           RK HG+FEAT  G  NISPYAWTADGMDYTP+SAQ
Sbjct: 84  RKLHGIFEATCNGTLNISPYAWTADGMDYTPFSAQ 118

[Close]

BLAST of Carg05960 vs. TAIR 10
Match: AT3G11000.1 (DCD (Development and Cell Death) domain protein )

HSP 1 Score: 43.1 bits (100), Expect = 1.0e-04
Identity = 18/35 (51.43%), Postives = 23/35 (65.71%), Query Frame = 0


Query: 33 RKFHGVFEATSQGDQNISPYAWTADGMDYTPYSAQ 68
          R  HG+FEA S+G  NI   AW+ +G D +PY AQ
Sbjct: 59 RTLHGIFEAASEGKLNIDSKAWSPNGTDPSPYPAQ 93

[Close]

BLAST of Carg05960 vs. TAIR 10
Match: AT3G11000.2 (DCD (Development and Cell Death) domain protein )

HSP 1 Score: 43.1 bits (100), Expect = 1.0e-04
Identity = 18/35 (51.43%), Postives = 23/35 (65.71%), Query Frame = 0


Query: 33  RKFHGVFEATSQGDQNISPYAWTADGMDYTPYSAQ 68
           R  HG+FEA S+G  NI   AW+ +G D +PY AQ
Sbjct: 178 RTLHGIFEAASEGKLNIDSKAWSPNGTDPSPYPAQ 212

The following BLAST results are available for this feature:

BLAST of Carg05960 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG7033283.1	6.3e-33	100.00	hypothetical protein SDJN02_07337, partial [Cucurbita argyrosperma subsp. argyro...	[more]
KAG6602604.1	2.7e-23	90.00	hypothetical protein SDJN03_07837, partial [Cucurbita argyrosperma subsp. sorori...	[more]
XP_038885976.1	2.4e-08	82.86	uncharacterized protein LOC120076281 [Benincasa hispida]	[more]
XP_016899395.1	1.2e-07	80.00	PREDICTED: uncharacterized protein LOC103485594 isoform X3 [Cucumis melo]	[more]
XP_008441487.1	1.2e-07	80.00	PREDICTED: ring canal kelch homolog isoform X1 [Cucumis melo] >KAA0054992.1 ring...	[more]

BLAST of Carg05960 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of Carg05960 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7UGQ1	5.8e-08	80.00	Ring canal kelch-like protein isoform X1 OS=Cucumis melo var. makuwa OX=1194695 ...	[more]
A0A1S4DUJ9	5.8e-08	80.00	uncharacterized protein LOC103485594 isoform X3 OS=Cucumis melo OX=3656 GN=LOC10...	[more]
A0A1S3B4B6	5.8e-08	80.00	ring canal kelch homolog isoform X1 OS=Cucumis melo OX=3656 GN=LOC103485594 PE=4...	[more]
A0A1S3B344	5.8e-08	80.00	uncharacterized protein LOC103485594 isoform X2 OS=Cucumis melo OX=3656 GN=LOC10...	[more]
A0A1S4DTS8	5.8e-08	80.00	uncharacterized protein LOC103485594 isoform X4 OS=Cucumis melo OX=3656 GN=LOC10...	[more]

BLAST of Carg05960 vs. TAIR 10


Match Name	E-value	Identity	Description
AT3G11000.1	1.0e-04	51.43	DCD (Development and Cell Death) domain protein	[more]
AT3G11000.2	1.0e-04	51.43	DCD (Development and Cell Death) domain protein	[more]

InterPro

Analysis Name: InterPro Annotations of Silver-seed gourd (SMH-JMG-627) v2
Date Performed: 2021-10-25

Position :

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x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR013989	Development/cell death domain	PFAM	PF10539	Dev_Cell_Death	coord: 30..67 e-value: 1.5E-7 score: 31.3
IPR013989	Development/cell death domain	PROSITE	PS51222	DCD	coord: 1..67 score: 12.167102

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Carg05960-RA	Carg05960-RA	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0034976	response to endoplasmic reticulum stress