Carg05953 (gene) Silver-seed gourd (SMH-JMG-627) v2

Overview


Name	Carg05953
Type	gene
Organism	Cucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
Description	Pentatricopeptide repeat-containing protein
Location	Carg_Chr04: 21276807 .. 21277230 (-)
RNA-Seq Expression	Carg05953
Synteny	Carg05953

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTGTCAAAATGACATACACTTGGACCATTATACTTATTGTAGTGTATTTAATGCCATAGCTGAGTCGGGAAAGAAGGTTCATGCCCAGGCTATAAAATCAGGATTGGAAGTGAATCATATAAGTATCTGAAATGCAGTGGCTAATGCGTATGCTAAACGTGGATCGCAGGATGATGTAAGGAAGGTTTTTTTTCAGGGTGGAAGAAAGAGATTTAGTACCTTGGACCACCCTGGTGACTGCTTATTCTCAATGTTTTGAATGGGACAAAGCAATAGAAATCTTCTCAAATATGAGAAGAGAAGGCTTTACACCCAATCAATTCTCATTTTCTAGCATGCTCGTTTCATGTGCCAGCCTTTGCTTACTCGAGTACGTCCACAAGAAGTCCATGGTATCCCCTGCAAGGTTGGCTTGGATATGA

mRNA sequence

ATGTGTCAAAATGACATACACTTGGACCATTATACTTATTGTAGTGTATTTAATGCCATAGCTGAGTCGGGAAAGAAGGTTCATGCCCAGGCTATAAAATCAGGATTGGAATGGCTAATGCGTATGCTAAACGTGGATCGCAGGATGATGGTGGAAGAAAGAGATTTAGTACCTTGGACCACCCTGGTGACTGCTTATTCTCAATGTTTTGAATGGGACAAAGCAATAGAAATCTTCTCAAATATGAGAAGAGAAGGCTTTACACCCAATCAATTCTCATTTTCTAGCATGCTCGTTTCATGTGCCAGCCTTTGCTTACTCGAGTACGTCCACAAGAAGTCCATGGTATCCCCTGCAAGGTTGGCTTGGATATGA

Coding sequence (CDS)

ATGTGTCAAAATGACATACACTTGGACCATTATACTTATTGTAGTGTATTTAATGCCATAGCTGAGTCGGGAAAGAAGGTTCATGCCCAGGCTATAAAATCAGGATTGGAATGGCTAATGCGTATGCTAAACGTGGATCGCAGGATGATGGTGGAAGAAAGAGATTTAGTACCTTGGACCACCCTGGTGACTGCTTATTCTCAATGTTTTGAATGGGACAAAGCAATAGAAATCTTCTCAAATATGAGAAGAGAAGGCTTTACACCCAATCAATTCTCATTTTCTAGCATGCTCGTTTCATGTGCCAGCCTTTGCTTACTCGAGTACGTCCACAAGAAGTCCATGGTATCCCCTGCAAGGTTGGCTTGGATATGA

Protein sequence

MCQNDIHLDHYTYCSVFNAIAESGKKVHAQAIKSGLEWLMRMLNVDRRMMVEERDLVPWTTLVTAYSQCFEWDKAIEIFSNMRREGFTPNQFSFSSMLVSCASLCLLEYVHKKSMVSPARLAWI

Homology

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BLAST of Carg05953 vs. NCBI nr
Match: KAG7033276.1 (Pentatricopeptide repeat-containing protein, mitochondrial, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 260.0 bits (663), Expect = 1.0e-65
Identity = 124/124 (100.00%), Postives = 124/124 (100.00%), Query Frame = 0


Query: 1   MCQNDIHLDHYTYCSVFNAIAESGKKVHAQAIKSGLEWLMRMLNVDRRMMVEERDLVPWT 60
           MCQNDIHLDHYTYCSVFNAIAESGKKVHAQAIKSGLEWLMRMLNVDRRMMVEERDLVPWT
Sbjct: 1   MCQNDIHLDHYTYCSVFNAIAESGKKVHAQAIKSGLEWLMRMLNVDRRMMVEERDLVPWT 60

Query: 61  TLVTAYSQCFEWDKAIEIFSNMRREGFTPNQFSFSSMLVSCASLCLLEYVHKKSMVSPAR 120
           TLVTAYSQCFEWDKAIEIFSNMRREGFTPNQFSFSSMLVSCASLCLLEYVHKKSMVSPAR
Sbjct: 61  TLVTAYSQCFEWDKAIEIFSNMRREGFTPNQFSFSSMLVSCASLCLLEYVHKKSMVSPAR 120

Query: 121 LAWI 125
           LAWI
Sbjct: 121 LAWI 124

[Close]

BLAST of Carg05953 vs. NCBI nr
Match: XP_038884632.1 (pentatricopeptide repeat-containing protein At3g16610-like [Benincasa hispida] >XP_038884633.1 pentatricopeptide repeat-containing protein At3g16610-like [Benincasa hispida])

HSP 1 Score: 159.8 bits (403), Expect = 1.5e-35
Identity = 84/132 (63.64%), Postives = 95/132 (71.97%), Query Frame = 0


Query: 1   MCQNDIHLDHYTYCSVFNAIA-----ESGKKVHAQAIKSGLEWLMRMLNVDRRM------ 60
           MC NDIHLDHYTYCSVFNAIA      SGKKVHA+AIKSGLE  +  +++   +      
Sbjct: 363 MCLNDIHLDHYTYCSVFNAIAALKCLSSGKKVHARAIKSGLE--VNYISISNAVANAYAK 422

Query: 61  ------------MVEERDLVPWTTLVTAYSQCFEWDKAIEIFSNMRREGFTPNQFSFSSM 110
                        +E+RDLV WTTLVTAYSQC EWDKAIEIFSNMR EG+ PNQF+FSS+
Sbjct: 423 CGLLEDVRKVFYRMEDRDLVSWTTLVTAYSQCSEWDKAIEIFSNMREEGYAPNQFAFSSV 482

[Close]

BLAST of Carg05953 vs. NCBI nr
Match: TYK04529.1 (pentatricopeptide repeat-containing protein [Cucumis melo var. makuwa])

HSP 1 Score: 154.8 bits (390), Expect = 4.7e-34
Identity = 84/132 (63.64%), Postives = 94/132 (71.21%), Query Frame = 0


Query: 1   MCQNDIHLDHYTYCSVFNAIAE-----SGKKVHAQAIKSGLE------------------ 60
           MCQ+DIHLD YTYCSVFNAIA      SGKKVHA+AIKSGLE                  
Sbjct: 380 MCQSDIHLDRYTYCSVFNAIASLKCLLSGKKVHARAIKSGLEVNCVSISNAVANAYAKCG 439

Query: 61  WLMRMLNVDRRMMVEERDLVPWTTLVTAYSQCFEWDKAIEIFSNMRREGFTPNQFSFSSM 110
            L  +  V  RM  E+RDL+ WT+LVTAYSQC EWDKAIEIFSNMR EG+ PNQF+FSS+
Sbjct: 440 SLEDVRKVFNRM--EDRDLISWTSLVTAYSQCSEWDKAIEIFSNMRAEGYAPNQFAFSSV 499

[Close]

BLAST of Carg05953 vs. NCBI nr
Match: KAA0052031.1 (pentatricopeptide repeat-containing protein [Cucumis melo var. makuwa])

HSP 1 Score: 154.8 bits (390), Expect = 4.7e-34
Identity = 84/132 (63.64%), Postives = 94/132 (71.21%), Query Frame = 0


Query: 1   MCQNDIHLDHYTYCSVFNAIAE-----SGKKVHAQAIKSGLE------------------ 60
           MCQ+DIHLD YTYCSVFNAIA      SGKKVHA+AIKSGLE                  
Sbjct: 363 MCQSDIHLDRYTYCSVFNAIASLKCLLSGKKVHARAIKSGLEVNCVSISNAVANAYAKCG 422

Query: 61  WLMRMLNVDRRMMVEERDLVPWTTLVTAYSQCFEWDKAIEIFSNMRREGFTPNQFSFSSM 110
            L  +  V  RM  E+RDL+ WT+LVTAYSQC EWDKAIEIFSNMR EG+ PNQF+FSS+
Sbjct: 423 SLEDVRKVFNRM--EDRDLISWTSLVTAYSQCSEWDKAIEIFSNMRAEGYAPNQFAFSSV 482

[Close]

BLAST of Carg05953 vs. NCBI nr
Match: XP_016901974.1 (PREDICTED: pentatricopeptide repeat-containing protein At2g27610-like [Cucumis melo])

HSP 1 Score: 154.8 bits (390), Expect = 4.7e-34
Identity = 84/132 (63.64%), Postives = 94/132 (71.21%), Query Frame = 0


Query: 1   MCQNDIHLDHYTYCSVFNAIAE-----SGKKVHAQAIKSGLE------------------ 60
           MCQ+DIHLD YTYCSVFNAIA      SGKKVHA+AIKSGLE                  
Sbjct: 363 MCQSDIHLDRYTYCSVFNAIASLKCLLSGKKVHARAIKSGLEVNCVSISNAVANAYAKCG 422

Query: 61  WLMRMLNVDRRMMVEERDLVPWTTLVTAYSQCFEWDKAIEIFSNMRREGFTPNQFSFSSM 110
            L  +  V  RM  E+RDL+ WT+LVTAYSQC EWDKAIEIFSNMR EG+ PNQF+FSS+
Sbjct: 423 SLEDVRKVFNRM--EDRDLISWTSLVTAYSQCSEWDKAIEIFSNMRAEGYAPNQFAFSSV 482

[Close]

BLAST of Carg05953 vs. ExPASy Swiss-Prot
Match: Q9SVA5 (Pentatricopeptide repeat-containing protein At4g39530 OS=Arabidopsis thaliana OX=3702 GN=PCMP-E52 PE=3 SV=1)

HSP 1 Score: 58.5 bits (140), Expect = 6.0e-08
Identity = 36/129 (27.91%), Postives = 68/129 (52.71%), Query Frame = 0


Query: 1   MCQNDIHLDHYTYCSVFNAIA-----ESGKKVHAQAIKSGLEWLMRMLNVDRRMMVE--- 60
           + ++++  D Y   +V +A +     E GK++HA  ++ GLE    ++NV     V+   
Sbjct: 240 LMEDNVVPDGYILSTVLSACSILPFLEGGKQIHAHILRYGLEMDASLMNVLIDSYVKCGR 299

Query: 61  ------------ERDLVPWTTLVTAYSQCFEWDKAIEIFSNMRREGFTPNQFSFSSMLVS 110
                        ++++ WTTL++ Y Q     +A+E+F++M + G  P+ ++ SS+L S
Sbjct: 300 VIAAHKLFNGMPNKNIISWTTLLSGYKQNALHKEAMELFTSMSKFGLKPDMYACSSILTS 359

[Close]

BLAST of Carg05953 vs. ExPASy Swiss-Prot
Match: Q9FWA6 (Pentatricopeptide repeat-containing protein At3g02330, mitochondrial OS=Arabidopsis thaliana OX=3702 GN=PCMP-E90 PE=2 SV=2)

HSP 1 Score: 57.0 bits (136), Expect = 1.8e-07
Identity = 40/128 (31.25%), Postives = 65/128 (50.78%), Query Frame = 0


Query: 1   MCQNDIHLDHYTYCSVFN-----AIAESGKKVHAQAIKSGLE-------WLMRMLNV--- 60
           M +  I  D +TY +V +     A A  GK++HAQ IK  L+        L+ M +    
Sbjct: 594 MMEMGITPDKFTYATVLDTCANLASAGLGKQIHAQVIKKELQSDVYICSTLVDMYSKCGD 653

Query: 61  --DRRMMVEE---RDLVPWTTLVTAYSQCFEWDKAIEIFSNMRREGFTPNQFSFSSMLVS 109
             D R+M E+   RD V W  ++  Y+   + ++AI++F  M  E   PN  +F S+L +
Sbjct: 654 LHDSRLMFEKSLRRDFVTWNAMICGYAHHGKGEEAIQLFERMILENIKPNHVTFISILRA 713

[Close]

BLAST of Carg05953 vs. ExPASy Swiss-Prot
Match: Q9ZUW3 (Pentatricopeptide repeat-containing protein At2g27610 OS=Arabidopsis thaliana OX=3702 GN=PCMP-H60 PE=2 SV=1)

HSP 1 Score: 56.2 bits (134), Expect = 3.0e-07
Identity = 32/119 (26.89%), Postives = 63/119 (52.94%), Query Frame = 0


Query: 1   MCQNDIHLDHYTYCSVFNAI-AESGKKVHAQAIKSG-----------LEWLMRMLNVDRR 60
           M +  +  + +TY  +  A+   S  +VHAQ +K+            L+  +++  V+  
Sbjct: 388 MKRKGVRPNEFTYSVILTALPVISPSEVHAQVVKTNYERSSTVGTALLDAYVKLGKVEEA 447

Query: 61  MMV----EERDLVPWTTLVTAYSQCFEWDKAIEIFSNMRREGFTPNQFSFSSMLVSCAS 104
             V    +++D+V W+ ++  Y+Q  E + AI++F  + + G  PN+F+FSS+L  CA+
Sbjct: 448 AKVFSGIDDKDIVAWSAMLAGYAQTGETEAAIKMFGELTKGGIKPNEFTFSSILNVCAA 506

[Close]

BLAST of Carg05953 vs. ExPASy Swiss-Prot
Match: Q9STS9 (Putative pentatricopeptide repeat-containing protein At3g47840 OS=Arabidopsis thaliana OX=3702 GN=PCMP-E43 PE=3 SV=1)

HSP 1 Score: 56.2 bits (134), Expect = 3.0e-07
Identity = 38/119 (31.93%), Postives = 53/119 (44.54%), Query Frame = 0


Query: 9   DHYTYCSVFNAIA-----ESGKKVHAQAIKSGLEWLMRMLNVDRRMMVE----------- 68
           D YT+     A A     + GK +H   I  G    + + N    M  E           
Sbjct: 208 DTYTFAIALKACAGLRQVKYGKAIHTHVIVRGFVTTLCVANSLATMYTECGEMQDGLCLF 267

Query: 69  ----ERDLVPWTTLVTAYSQCFEWDKAIEIFSNMRREGFTPNQFSFSSMLVSCASLCLL 108
               ERD+V WT+L+ AY +  +  KA+E F  MR     PN+ +F+SM  +CASL  L
Sbjct: 268 ENMSERDVVSWTSLIVAYKRIGQEVKAVETFIKMRNSQVPPNEQTFASMFSACASLSRL 326

[Close]

BLAST of Carg05953 vs. ExPASy Swiss-Prot
Match: Q9LSL8 (Pentatricopeptide repeat-containing protein At5g65570 OS=Arabidopsis thaliana OX=3702 GN=PCMP-H47 PE=2 SV=1)

HSP 1 Score: 54.3 bits (129), Expect = 1.1e-06
Identity = 41/128 (32.03%), Postives = 65/128 (50.78%), Query Frame = 0


Query: 1   MCQNDIHLDHYTYCSVFNAIAE-----SGKKVHAQAIKSGLE--------WLMRM----- 60
           M  N++  D YT  SVF A ++       ++ H  A+  GLE         L+ M     
Sbjct: 156 MITNNVLPDEYTLSSVFKAFSDLSLEKEAQRSHGLAVILGLEVSNVFVGSALVDMYVKFG 215

Query: 61  ------LNVDRRMMVEERDLVPWTTLVTAYSQCFEWDKAIEIFSNMRREGFTPNQFSFSS 105
                 L +DR   VEE+D+V  T L+  YSQ  E  +A++ F +M  E   PN+++++S
Sbjct: 216 KTREAKLVLDR---VEEKDVVLITALIVGYSQKGEDTEAVKAFQSMLVEKVQPNEYTYAS 275

[Close]

BLAST of Carg05953 vs. ExPASy TrEMBL
Match: A0A5D3C2B1 (Pentatricopeptide repeat-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold409G001490 PE=4 SV=1)

HSP 1 Score: 154.8 bits (390), Expect = 2.3e-34
Identity = 84/132 (63.64%), Postives = 94/132 (71.21%), Query Frame = 0


Query: 1   MCQNDIHLDHYTYCSVFNAIAE-----SGKKVHAQAIKSGLE------------------ 60
           MCQ+DIHLD YTYCSVFNAIA      SGKKVHA+AIKSGLE                  
Sbjct: 380 MCQSDIHLDRYTYCSVFNAIASLKCLLSGKKVHARAIKSGLEVNCVSISNAVANAYAKCG 439

Query: 61  WLMRMLNVDRRMMVEERDLVPWTTLVTAYSQCFEWDKAIEIFSNMRREGFTPNQFSFSSM 110
            L  +  V  RM  E+RDL+ WT+LVTAYSQC EWDKAIEIFSNMR EG+ PNQF+FSS+
Sbjct: 440 SLEDVRKVFNRM--EDRDLISWTSLVTAYSQCSEWDKAIEIFSNMRAEGYAPNQFAFSSV 499

[Close]

BLAST of Carg05953 vs. ExPASy TrEMBL
Match: A0A5A7UEQ9 (Pentatricopeptide repeat-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold60G005280 PE=4 SV=1)

HSP 1 Score: 154.8 bits (390), Expect = 2.3e-34
Identity = 84/132 (63.64%), Postives = 94/132 (71.21%), Query Frame = 0


Query: 1   MCQNDIHLDHYTYCSVFNAIAE-----SGKKVHAQAIKSGLE------------------ 60
           MCQ+DIHLD YTYCSVFNAIA      SGKKVHA+AIKSGLE                  
Sbjct: 363 MCQSDIHLDRYTYCSVFNAIASLKCLLSGKKVHARAIKSGLEVNCVSISNAVANAYAKCG 422

Query: 61  WLMRMLNVDRRMMVEERDLVPWTTLVTAYSQCFEWDKAIEIFSNMRREGFTPNQFSFSSM 110
            L  +  V  RM  E+RDL+ WT+LVTAYSQC EWDKAIEIFSNMR EG+ PNQF+FSS+
Sbjct: 423 SLEDVRKVFNRM--EDRDLISWTSLVTAYSQCSEWDKAIEIFSNMRAEGYAPNQFAFSSV 482

[Close]

BLAST of Carg05953 vs. ExPASy TrEMBL
Match: A0A1S4E171 (pentatricopeptide repeat-containing protein At2g27610-like OS=Cucumis melo OX=3656 GN=LOC103496600 PE=4 SV=1)

HSP 1 Score: 154.8 bits (390), Expect = 2.3e-34
Identity = 84/132 (63.64%), Postives = 94/132 (71.21%), Query Frame = 0


Query: 1   MCQNDIHLDHYTYCSVFNAIAE-----SGKKVHAQAIKSGLE------------------ 60
           MCQ+DIHLD YTYCSVFNAIA      SGKKVHA+AIKSGLE                  
Sbjct: 363 MCQSDIHLDRYTYCSVFNAIASLKCLLSGKKVHARAIKSGLEVNCVSISNAVANAYAKCG 422

Query: 61  WLMRMLNVDRRMMVEERDLVPWTTLVTAYSQCFEWDKAIEIFSNMRREGFTPNQFSFSSM 110
            L  +  V  RM  E+RDL+ WT+LVTAYSQC EWDKAIEIFSNMR EG+ PNQF+FSS+
Sbjct: 423 SLEDVRKVFNRM--EDRDLISWTSLVTAYSQCSEWDKAIEIFSNMRAEGYAPNQFAFSSV 482

[Close]

BLAST of Carg05953 vs. ExPASy TrEMBL
Match: A0A6J1JX63 (pentatricopeptide repeat-containing protein At2g27610-like OS=Cucurbita maxima OX=3661 GN=LOC111489649 PE=4 SV=1)

HSP 1 Score: 154.1 bits (388), Expect = 3.9e-34
Identity = 82/132 (62.12%), Postives = 93/132 (70.45%), Query Frame = 0


Query: 1   MCQNDIHLDHYTYCSVFNAIA-----ESGKKVHAQAIKSGLEWLMRMLNVDRRM------ 60
           MC N++HLD YTYCSVFNAIA       GKKVHA+AIKSGLE  +  +++   +      
Sbjct: 363 MCLNNVHLDRYTYCSVFNAIAALKCLSLGKKVHARAIKSGLE--VNNISISNAVANAYAK 422

Query: 61  ------------MVEERDLVPWTTLVTAYSQCFEWDKAIEIFSNMRREGFTPNQFSFSSM 110
                        +EERDLV WTTLVTAYSQC EWDKAIEIFSNMR EGF PNQF+FSS+
Sbjct: 423 CGSLEDLRKVFYSMEERDLVSWTTLVTAYSQCSEWDKAIEIFSNMREEGFAPNQFAFSSV 482

[Close]

BLAST of Carg05953 vs. ExPASy TrEMBL
Match: A0A0A0KBQ4 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G013890 PE=4 SV=1)

HSP 1 Score: 154.1 bits (388), Expect = 3.9e-34
Identity = 84/132 (63.64%), Postives = 93/132 (70.45%), Query Frame = 0


Query: 1   MCQNDIHLDHYTYCSVFNAIA-----ESGKKVHAQAIKSGLE------------------ 60
           MCQNDI+LDHYTYCSVFNAIA       GKKVHA+AIKSGLE                  
Sbjct: 353 MCQNDIYLDHYTYCSVFNAIAALKCLSLGKKVHARAIKSGLEVNYVSISNAVANAYAKCG 412

Query: 61  WLMRMLNVDRRMMVEERDLVPWTTLVTAYSQCFEWDKAIEIFSNMRREGFTPNQFSFSSM 110
            L  +  V  RM  E+RDL+ WT+LVTAYSQC EWDKAIEIFSNMR EG  PNQF+FSS+
Sbjct: 413 SLEDVRKVFNRM--EDRDLISWTSLVTAYSQCSEWDKAIEIFSNMRAEGIAPNQFTFSSV 472

[Close]

BLAST of Carg05953 vs. TAIR 10
Match: AT4G39530.1 (Tetratricopeptide repeat (TPR)-like superfamily protein )

HSP 1 Score: 58.5 bits (140), Expect = 4.3e-09
Identity = 36/129 (27.91%), Postives = 68/129 (52.71%), Query Frame = 0


Query: 1   MCQNDIHLDHYTYCSVFNAIA-----ESGKKVHAQAIKSGLEWLMRMLNVDRRMMVE--- 60
           + ++++  D Y   +V +A +     E GK++HA  ++ GLE    ++NV     V+   
Sbjct: 240 LMEDNVVPDGYILSTVLSACSILPFLEGGKQIHAHILRYGLEMDASLMNVLIDSYVKCGR 299

Query: 61  ------------ERDLVPWTTLVTAYSQCFEWDKAIEIFSNMRREGFTPNQFSFSSMLVS 110
                        ++++ WTTL++ Y Q     +A+E+F++M + G  P+ ++ SS+L S
Sbjct: 300 VIAAHKLFNGMPNKNIISWTTLLSGYKQNALHKEAMELFTSMSKFGLKPDMYACSSILTS 359

[Close]

BLAST of Carg05953 vs. TAIR 10
Match: AT3G02330.1 (Pentatricopeptide repeat (PPR) superfamily protein )

HSP 1 Score: 57.0 bits (136), Expect = 1.3e-08
Identity = 40/128 (31.25%), Postives = 65/128 (50.78%), Query Frame = 0


Query: 1   MCQNDIHLDHYTYCSVFN-----AIAESGKKVHAQAIKSGLE-------WLMRMLNV--- 60
           M +  I  D +TY +V +     A A  GK++HAQ IK  L+        L+ M +    
Sbjct: 594 MMEMGITPDKFTYATVLDTCANLASAGLGKQIHAQVIKKELQSDVYICSTLVDMYSKCGD 653

Query: 61  --DRRMMVEE---RDLVPWTTLVTAYSQCFEWDKAIEIFSNMRREGFTPNQFSFSSMLVS 109
             D R+M E+   RD V W  ++  Y+   + ++AI++F  M  E   PN  +F S+L +
Sbjct: 654 LHDSRLMFEKSLRRDFVTWNAMICGYAHHGKGEEAIQLFERMILENIKPNHVTFISILRA 713

[Close]

BLAST of Carg05953 vs. TAIR 10
Match: AT2G27610.1 (Tetratricopeptide repeat (TPR)-like superfamily protein )

HSP 1 Score: 56.2 bits (134), Expect = 2.1e-08
Identity = 32/119 (26.89%), Postives = 63/119 (52.94%), Query Frame = 0


Query: 1   MCQNDIHLDHYTYCSVFNAI-AESGKKVHAQAIKSG-----------LEWLMRMLNVDRR 60
           M +  +  + +TY  +  A+   S  +VHAQ +K+            L+  +++  V+  
Sbjct: 388 MKRKGVRPNEFTYSVILTALPVISPSEVHAQVVKTNYERSSTVGTALLDAYVKLGKVEEA 447

Query: 61  MMV----EERDLVPWTTLVTAYSQCFEWDKAIEIFSNMRREGFTPNQFSFSSMLVSCAS 104
             V    +++D+V W+ ++  Y+Q  E + AI++F  + + G  PN+F+FSS+L  CA+
Sbjct: 448 AKVFSGIDDKDIVAWSAMLAGYAQTGETEAAIKMFGELTKGGIKPNEFTFSSILNVCAA 506

[Close]

BLAST of Carg05953 vs. TAIR 10
Match: AT3G47840.1 (Tetratricopeptide repeat (TPR)-like superfamily protein )

HSP 1 Score: 56.2 bits (134), Expect = 2.1e-08
Identity = 38/119 (31.93%), Postives = 53/119 (44.54%), Query Frame = 0


Query: 9   DHYTYCSVFNAIA-----ESGKKVHAQAIKSGLEWLMRMLNVDRRMMVE----------- 68
           D YT+     A A     + GK +H   I  G    + + N    M  E           
Sbjct: 208 DTYTFAIALKACAGLRQVKYGKAIHTHVIVRGFVTTLCVANSLATMYTECGEMQDGLCLF 267

Query: 69  ----ERDLVPWTTLVTAYSQCFEWDKAIEIFSNMRREGFTPNQFSFSSMLVSCASLCLL 108
               ERD+V WT+L+ AY +  +  KA+E F  MR     PN+ +F+SM  +CASL  L
Sbjct: 268 ENMSERDVVSWTSLIVAYKRIGQEVKAVETFIKMRNSQVPPNEQTFASMFSACASLSRL 326

[Close]

BLAST of Carg05953 vs. TAIR 10
Match: AT3G61170.1 (Tetratricopeptide repeat (TPR)-like superfamily protein )

HSP 1 Score: 55.8 bits (133), Expect = 2.8e-08
Identity = 33/97 (34.02%), Postives = 53/97 (54.64%), Query Frame = 0


Query: 24  GKKVHAQAIKSGLEWLMRMLNVDRRM----------------MVEERDLVPWTTLVTAYS 83
           G+++H   IK+G +  + ++N    M                M  E++ V WT+++T YS
Sbjct: 144 GEQIHGHTIKTGFDLDVNVVNGLLAMYAQCKRISEAEYLFETMEGEKNNVTWTSMLTGYS 203

Query: 84  QCFEWDKAIEIFSNMRREGFTPNQFSFSSMLVSCASL 105
           Q     KAIE F ++RREG   NQ++F S+L +CAS+
Sbjct: 204 QNGFAFKAIECFRDLRREGNQSNQYTFPSVLTACASV 240

The following BLAST results are available for this feature:

BLAST of Carg05953 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG7033276.1	1.0e-65	100.00	Pentatricopeptide repeat-containing protein, mitochondrial, partial [Cucurbita a...	[more]
XP_038884632.1	1.5e-35	63.64	pentatricopeptide repeat-containing protein At3g16610-like [Benincasa hispida] >...	[more]
TYK04529.1	4.7e-34	63.64	pentatricopeptide repeat-containing protein [Cucumis melo var. makuwa]	[more]
KAA0052031.1	4.7e-34	63.64	pentatricopeptide repeat-containing protein [Cucumis melo var. makuwa]	[more]
XP_016901974.1	4.7e-34	63.64	PREDICTED: pentatricopeptide repeat-containing protein At2g27610-like [Cucumis m...	[more]

BLAST of Carg05953 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9SVA5	6.0e-08	27.91	Pentatricopeptide repeat-containing protein At4g39530 OS=Arabidopsis thaliana OX...	[more]
Q9FWA6	1.8e-07	31.25	Pentatricopeptide repeat-containing protein At3g02330, mitochondrial OS=Arabidop...	[more]
Q9ZUW3	3.0e-07	26.89	Pentatricopeptide repeat-containing protein At2g27610 OS=Arabidopsis thaliana OX...	[more]
Q9STS9	3.0e-07	31.93	Putative pentatricopeptide repeat-containing protein At3g47840 OS=Arabidopsis th...	[more]
Q9LSL8	1.1e-06	32.03	Pentatricopeptide repeat-containing protein At5g65570 OS=Arabidopsis thaliana OX...	[more]

BLAST of Carg05953 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5D3C2B1	2.3e-34	63.64	Pentatricopeptide repeat-containing protein OS=Cucumis melo var. makuwa OX=11946...	[more]
A0A5A7UEQ9	2.3e-34	63.64	Pentatricopeptide repeat-containing protein OS=Cucumis melo var. makuwa OX=11946...	[more]
A0A1S4E171	2.3e-34	63.64	pentatricopeptide repeat-containing protein At2g27610-like OS=Cucumis melo OX=36...	[more]
A0A6J1JX63	3.9e-34	62.12	pentatricopeptide repeat-containing protein At2g27610-like OS=Cucurbita maxima O...	[more]
A0A0A0KBQ4	3.9e-34	63.64	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G013890 PE=4 SV=1	[more]

BLAST of Carg05953 vs. TAIR 10


Match Name	E-value	Identity	Description
AT4G39530.1	4.3e-09	27.91	Tetratricopeptide repeat (TPR)-like superfamily protein	[more]
AT3G02330.1	1.3e-08	31.25	Pentatricopeptide repeat (PPR) superfamily protein	[more]
AT2G27610.1	2.1e-08	26.89	Tetratricopeptide repeat (TPR)-like superfamily protein	[more]
AT3G47840.1	2.1e-08	31.93	Tetratricopeptide repeat (TPR)-like superfamily protein	[more]
AT3G61170.1	2.8e-08	34.02	Tetratricopeptide repeat (TPR)-like superfamily protein	[more]

InterPro

Analysis Name: InterPro Annotations of Silver-seed gourd (SMH-JMG-627) v2
Date Performed: 2021-10-25

Position :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR011990	Tetratricopeptide-like helical domain superfamily	GENE3D	1.25.40.10	Tetratricopeptide repeat domain	coord: 1..115 e-value: 2.6E-16 score: 61.9
IPR002885	Pentatricopeptide repeat	PFAM	PF13041	PPR_2	coord: 55..102 e-value: 2.9E-9 score: 37.0
IPR002885	Pentatricopeptide repeat	TIGRFAM	TIGR00756	TIGR00756	coord: 59..90 e-value: 3.4E-7 score: 28.0
IPR002885	Pentatricopeptide repeat	PROSITE	PS51375	PPR	coord: 55..89 score: 11.838262
None	No IPR available	PANTHER	PTHR24015:SF1875	PENTATRICOPEPTIDE (PPR) REPEAT PROTEIN	coord: 1..109
None	No IPR available	PANTHER	PTHR24015	OS07G0578800 PROTEIN-RELATED	coord: 1..109

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Carg05953-RA	Carg05953-RA	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
molecular_function	GO:0005515	protein binding