Carg05950 (gene) Silver-seed gourd (SMH-JMG-627) v2

Overview


Name	Carg05950
Type	gene
Organism	Cucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
Description	HIG1 domain-containing protein
Location	Carg_Chr04: 21266377 .. 21266840 (+)
RNA-Seq Expression	Carg05950
Synteny	Carg05950

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGAAGCCATTCAAGCTTGGATTTCTGAACACAAACTCACCAGCATTGGTTTGTCTCCTCCTTTCAAGCATCCTCTGTTTTCCTTCTATGTTCTTTCCCATAACATTATATATGAATTTTTTCGTGTAGGAGCTCTGTGGGCGTCTGGGATTGGAGCCTCGCTGGTGTACACAAAATCAAGAACTCCCCTGAAGCCAAGTCTCCGGCTTATTCATGCCAGGTAAACACACGATATCATTCAATAGAGACCATGATATCCATTTTTTTCGTTAAAACTGAAATGGGTTATCTTATTTTATAGGATGCATGCTCAGGCTTTGACGTTGGCGGTTCTTTCCGGCGCCGCCGTCTACCACTACTACGAGAAGGAGAAGAAAGGCGTCGCCGATCGAACCAAGGTTTCCGCTTCCGCCGTGCCGGGGAAGTAGGATTGGCGGCGCACCCGGGACGGAAAGGGAATGGA

mRNA sequence

ATGGAAGCCATTCAAGCTTGGATTTCTGAACACAAACTCACCAGCATTGGAGCTCTGTGGGCGTCTGGGATTGGAGCCTCGCTGGTGTACACAAAATCAAGAACTCCCCTGAAGCCAAGTCTCCGGCTTATTCATGCCAGGATGCATGCTCAGGCTTTGACGTTGGCGGTTCTTTCCGGCGCCGCCGTCTACCACTACTACGAGAAGGAGAAGAAAGGCGTCGCCGATCGAACCAAGGTTTCCGCTTCCGCCGTGCCGGGGAAGTAGGATTGGCGGCGCACCCGGGACGGAAAGGGAATGGA

Coding sequence (CDS)

ATGGAAGCCATTCAAGCTTGGATTTCTGAACACAAACTCACCAGCATTGGAGCTCTGTGGGCGTCTGGGATTGGAGCCTCGCTGGTGTACACAAAATCAAGAACTCCCCTGAAGCCAAGTCTCCGGCTTATTCATGCCAGGATGCATGCTCAGGCTTTGACGTTGGCGGTTCTTTCCGGCGCCGCCGTCTACCACTACTACGAGAAGGAGAAGAAAGGCGTCGCCGATCGAACCAAGGTTTCCGCTTCCGCCGTGCCGGGGAAGTAG

Protein sequence

MEAIQAWISEHKLTSIGALWASGIGASLVYTKSRTPLKPSLRLIHARMHAQALTLAVLSGAAVYHYYEKEKKGVADRTKVSASAVPGK

Homology

[Close]

BLAST of Carg05950 vs. NCBI nr
Match: KAG7033273.1 (hypothetical protein SDJN02_07327, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 172.6 bits (436), Expect = 1.6e-39
Identity = 88/88 (100.00%), Postives = 88/88 (100.00%), Query Frame = 0


Query: 1  MEAIQAWISEHKLTSIGALWASGIGASLVYTKSRTPLKPSLRLIHARMHAQALTLAVLSG 60
          MEAIQAWISEHKLTSIGALWASGIGASLVYTKSRTPLKPSLRLIHARMHAQALTLAVLSG
Sbjct: 1  MEAIQAWISEHKLTSIGALWASGIGASLVYTKSRTPLKPSLRLIHARMHAQALTLAVLSG 60

Query: 61 AAVYHYYEKEKKGVADRTKVSASAVPGK 89
          AAVYHYYEKEKKGVADRTKVSASAVPGK
Sbjct: 61 AAVYHYYEKEKKGVADRTKVSASAVPGK 88

[Close]

BLAST of Carg05950 vs. NCBI nr
Match: KAG6602595.1 (hypothetical protein SDJN03_07828, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 141.0 bits (354), Expect = 5.0e-30
Identity = 72/72 (100.00%), Postives = 72/72 (100.00%), Query Frame = 0


Query: 17 GALWASGIGASLVYTKSRTPLKPSLRLIHARMHAQALTLAVLSGAAVYHYYEKEKKGVAD 76
          GALWASGIGASLVYTKSRTPLKPSLRLIHARMHAQALTLAVLSGAAVYHYYEKEKKGVAD
Sbjct: 16 GALWASGIGASLVYTKSRTPLKPSLRLIHARMHAQALTLAVLSGAAVYHYYEKEKKGVAD 75

Query: 77 RTKVSASAVPGK 89
          RTKVSASAVPGK
Sbjct: 76 RTKVSASAVPGK 87

[Close]

BLAST of Carg05950 vs. NCBI nr
Match: KAG6578469.1 (hypothetical protein SDJN03_22917, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 137.1 bits (344), Expect = 7.2e-29
Identity = 70/87 (80.46%), Postives = 74/87 (85.06%), Query Frame = 0


Query: 1  MEAIQAWISEHKLTSIGALWASGIGASLVYTKSRTPLKPSLRLIHARMHAQALTLAVLSG 60
          MEAIQAW+S+HKLTSIGALWASGIGASL YT+S TPLKPSLRLIHARMHAQALTLAVLSG
Sbjct: 1  MEAIQAWVSQHKLTSIGALWASGIGASLAYTRSTTPLKPSLRLIHARMHAQALTLAVLSG 60

Query: 61 AAVYHYYEKEKKGVADRTKVSASAVPG 88
          AAVYHYYE +  GV      SA  VPG
Sbjct: 61 AAVYHYYENKSAGVRSEAPTSA-VVPG 86

[Close]

BLAST of Carg05950 vs. NCBI nr
Match: KAG7016034.1 (BTB/POZ domain-containing protein, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 135.2 bits (339), Expect = 2.8e-28
Identity = 67/82 (81.71%), Postives = 71/82 (86.59%), Query Frame = 0


Query: 1  MEAIQAWISEHKLTSIGALWASGIGASLVYTKSRTPLKPSLRLIHARMHAQALTLAVLSG 60
          MEAIQAW+S+HKLTSIGALWASGIGASL YT+S TPLKPSLRLIHARMHAQALTLAVLSG
Sbjct: 1  MEAIQAWVSQHKLTSIGALWASGIGASLAYTRSTTPLKPSLRLIHARMHAQALTLAVLSG 60

Query: 61 AAVYHYYEKEKKGVADRTKVSA 83
          AAVYHYYE +  GV      SA
Sbjct: 61 AAVYHYYENKSAGVRSEAPTSA 82

[Close]

BLAST of Carg05950 vs. NCBI nr
Match: XP_004138401.1 (uncharacterized protein LOC101218681 [Cucumis sativus] >KGN45820.1 hypothetical protein Csa_005574 [Cucumis sativus])

HSP 1 Score: 131.0 bits (328), Expect = 5.2e-27
Identity = 63/70 (90.00%), Postives = 68/70 (97.14%), Query Frame = 0


Query: 1  MEAIQAWISEHKLTSIGALWASGIGASLVYTKSRTPLKPSLRLIHARMHAQALTLAVLSG 60
          MEAIQAW+SEHKLT+IGALWASGIGASL YT+SRTPLKPSLRLIHARMHAQALTLAVLSG
Sbjct: 1  MEAIQAWVSEHKLTTIGALWASGIGASLAYTRSRTPLKPSLRLIHARMHAQALTLAVLSG 60

Query: 61 AAVYHYYEKE 71
          AAVYHYY+ +
Sbjct: 61 AAVYHYYDNK 70

[Close]

BLAST of Carg05950 vs. ExPASy TrEMBL
Match: A0A0A0K7T4 (HIG1 domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_6G013920 PE=4 SV=1)

HSP 1 Score: 131.0 bits (328), Expect = 2.5e-27
Identity = 63/70 (90.00%), Postives = 68/70 (97.14%), Query Frame = 0


Query: 1  MEAIQAWISEHKLTSIGALWASGIGASLVYTKSRTPLKPSLRLIHARMHAQALTLAVLSG 60
          MEAIQAW+SEHKLT+IGALWASGIGASL YT+SRTPLKPSLRLIHARMHAQALTLAVLSG
Sbjct: 1  MEAIQAWVSEHKLTTIGALWASGIGASLAYTRSRTPLKPSLRLIHARMHAQALTLAVLSG 60

Query: 61 AAVYHYYEKE 71
          AAVYHYY+ +
Sbjct: 61 AAVYHYYDNK 70

[Close]

BLAST of Carg05950 vs. ExPASy TrEMBL
Match: A0A5A7UEZ1 (Respiratory supercomplex factor 2-like protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold409G001530 PE=4 SV=1)

HSP 1 Score: 129.8 bits (325), Expect = 5.6e-27
Identity = 62/70 (88.57%), Postives = 68/70 (97.14%), Query Frame = 0


Query: 1  MEAIQAWISEHKLTSIGALWASGIGASLVYTKSRTPLKPSLRLIHARMHAQALTLAVLSG 60
          MEAIQAW+SEHKLT+IGALWASG+GASL YT+SRTPLKPSLRLIHARMHAQALTLAVLSG
Sbjct: 1  MEAIQAWVSEHKLTTIGALWASGMGASLAYTRSRTPLKPSLRLIHARMHAQALTLAVLSG 60

Query: 61 AAVYHYYEKE 71
          AAVYHYY+ +
Sbjct: 61 AAVYHYYDNK 70

[Close]

BLAST of Carg05950 vs. ExPASy TrEMBL
Match: A0A7J7I509 (HIG1 domain-containing protein OS=Camellia sinensis OX=4442 GN=HYC85_000926 PE=4 SV=1)

HSP 1 Score: 127.5 bits (319), Expect = 2.8e-26
Identity = 60/69 (86.96%), Postives = 67/69 (97.10%), Query Frame = 0


Query: 1   MEAIQAWISEHKLTSIGALWASGIGASLVYTKSRTPLKPSLRLIHARMHAQALTLAVLSG 60
           MEA+Q+W+SEHKLTSIG LWASGIGASL Y++++TPLKPSLRLIHARMHAQALTLAVLSG
Sbjct: 38  MEALQSWVSEHKLTSIGTLWASGIGASLAYSRAKTPLKPSLRLIHARMHAQALTLAVLSG 97

Query: 61  AAVYHYYEK 70
           AAVYHYYEK
Sbjct: 98  AAVYHYYEK 106

[Close]

BLAST of Carg05950 vs. ExPASy TrEMBL
Match: A0A067JNW4 (HIG1 domain-containing protein OS=Jatropha curcas OX=180498 GN=JCGZ_03356 PE=4 SV=1)

HSP 1 Score: 126.3 bits (316), Expect = 6.2e-26
Identity = 57/75 (76.00%), Postives = 70/75 (93.33%), Query Frame = 0


Query: 1  MEAIQAWISEHKLTSIGALWASGIGASLVYTKSRTPLKPSLRLIHARMHAQALTLAVLSG 60
          ME +Q+W+S+HKLTSIGALWA+ +G SL YT++RTPLKPSLRLIHARMHAQA+TLAVLSG
Sbjct: 1  MEGLQSWVSKHKLTSIGALWATAVGGSLAYTRTRTPLKPSLRLIHARMHAQAITLAVLSG 60

Query: 61 AAVYHYYEKEKKGVA 76
          AA+YHYYEK+++ VA
Sbjct: 61 AAIYHYYEKQEENVA 75

[Close]

BLAST of Carg05950 vs. ExPASy TrEMBL
Match: A0A540LHQ1 (HIG1 domain-containing protein OS=Malus baccata OX=106549 GN=C1H46_028432 PE=4 SV=1)

HSP 1 Score: 125.9 bits (315), Expect = 8.1e-26
Identity = 59/71 (83.10%), Postives = 67/71 (94.37%), Query Frame = 0


Query: 1  MEAIQAWISEHKLTSIGALWASGIGASLVYTKSRTPLKPSLRLIHARMHAQALTLAVLSG 60
          MEAIQ+W+SEHKLTSIG +WAS +GASL Y+K+RTPLKPSLRLIHARMHAQALTLAVLSG
Sbjct: 1  MEAIQSWVSEHKLTSIGGIWASAVGASLAYSKTRTPLKPSLRLIHARMHAQALTLAVLSG 60

Query: 61 AAVYHYYEKEK 72
          AAVYHYYE+ +
Sbjct: 61 AAVYHYYEEHE 71

[Close]

BLAST of Carg05950 vs. TAIR 10
Match: AT5G27760.1 (Hypoxia-responsive family protein )

HSP 1 Score: 84.7 bits (208), Expect = 4.0e-17
Identity = 41/74 (55.41%), Postives = 52/74 (70.27%), Query Frame = 0


Query: 4  IQAWISEHKLTSIGALWASGIGASLVYTKSRTPLKPSLRLIHARMHAQALTLAVLSGAAV 63
          I+ WI EHKL ++G LW SGI  S+ Y  S+  +K S+R+IHAR+HAQALTLA L+GAA 
Sbjct: 11 IREWIIEHKLRTVGCLWLSGISGSIAYNWSKPAMKTSVRIIHARLHAQALTLAALAGAAA 70

Query: 64 YHYYEKEKKGVADR 78
            YY+  K G  DR
Sbjct: 71 VEYYD-HKSGATDR 83

[Close]

BLAST of Carg05950 vs. TAIR 10
Match: AT3G05550.1 (Hypoxia-responsive family protein )

HSP 1 Score: 82.8 bits (203), Expect = 1.5e-16
Identity = 37/67 (55.22%), Postives = 51/67 (76.12%), Query Frame = 0


Query: 2  EAIQAWISEHKLTSIGALWASGIGASLVYTKSRTPLKPSLRLIHARMHAQALTLAVLSGA 61
          E I+ W+S+HKL ++G LW SGI  S+ Y  S+  +K S+++IHAR+HAQALTLA L+GA
Sbjct: 9  EEIRKWVSDHKLRTVGCLWLSGITGSIAYNWSQPAMKTSVKIIHARLHAQALTLAALAGA 68

Query: 62 AVYHYYE 69
          AV  YY+
Sbjct: 69 AVVEYYD 75

The following BLAST results are available for this feature:

BLAST of Carg05950 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG7033273.1	1.6e-39	100.00	hypothetical protein SDJN02_07327, partial [Cucurbita argyrosperma subsp. argyro...	[more]
KAG6602595.1	5.0e-30	100.00	hypothetical protein SDJN03_07828, partial [Cucurbita argyrosperma subsp. sorori...	[more]
KAG6578469.1	7.2e-29	80.46	hypothetical protein SDJN03_22917, partial [Cucurbita argyrosperma subsp. sorori...	[more]
KAG7016034.1	2.8e-28	81.71	BTB/POZ domain-containing protein, partial [Cucurbita argyrosperma subsp. argyro...	[more]
XP_004138401.1	5.2e-27	90.00	uncharacterized protein LOC101218681 [Cucumis sativus] >KGN45820.1 hypothetical ...	[more]

BLAST of Carg05950 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of Carg05950 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0K7T4	2.5e-27	90.00	HIG1 domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_6G013920 PE=4 S...	[more]
A0A5A7UEZ1	5.6e-27	88.57	Respiratory supercomplex factor 2-like protein OS=Cucumis melo var. makuwa OX=11...	[more]
A0A7J7I509	2.8e-26	86.96	HIG1 domain-containing protein OS=Camellia sinensis OX=4442 GN=HYC85_000926 PE=4...	[more]
A0A067JNW4	6.2e-26	76.00	HIG1 domain-containing protein OS=Jatropha curcas OX=180498 GN=JCGZ_03356 PE=4 S...	[more]
A0A540LHQ1	8.1e-26	83.10	HIG1 domain-containing protein OS=Malus baccata OX=106549 GN=C1H46_028432 PE=4 S...	[more]

BLAST of Carg05950 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G27760.1	4.0e-17	55.41	Hypoxia-responsive family protein	[more]
AT3G05550.1	1.5e-16	55.22	Hypoxia-responsive family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Silver-seed gourd (SMH-JMG-627) v2
Date Performed: 2021-10-25

Position :

Zoom :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	GENE3D	6.10.140.1320		coord: 13..72 e-value: 8.4E-7 score: 30.7
None	No IPR available	PANTHER	PTHR28018:SF3	RESPIRATORY SUPERCOMPLEX FACTOR 2, MITOCHONDRIAL	coord: 4..76
IPR007667	Hypoxia induced protein, domain	PFAM	PF04588	HIG_1_N	coord: 10..59 e-value: 3.4E-8 score: 33.6
IPR007667	Hypoxia induced protein, domain	PROSITE	PS51503	HIG1	coord: 1..76 score: 19.010029
IPR040153	Respiratory supercomplex factor 2, mitochondrial	PANTHER	PTHR28018	RESPIRATORY SUPERCOMPLEX FACTOR 2, MITOCHONDRIAL	coord: 4..76

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Carg05950-RA	Carg05950-RA	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0033617	mitochondrial cytochrome c oxidase assembly
cellular_component	GO:0031305	integral component of mitochondrial inner membrane
cellular_component	GO:0005746	mitochondrial respirasome