Carg05947 (gene) Silver-seed gourd (SMH-JMG-627) v2

Overview


Name	Carg05947
Type	gene
Organism	Cucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
Description	cell wall protein RBR3
Location	Carg_Chr04: 21258205 .. 21258831 (+)
RNA-Seq Expression	Carg05947
Synteny	Carg05947

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGCAAACTCCAAACTACGACCAAATCTCTCAAAAATCACTCAAAATCAAGCATGAAGATAATAGATTCTTGTCGAGGGTTGTGTCAAAAGACCCTAATTCCGCCGCTAACTCCTCTTTTAGAGTGTATTACGGCGGCGCTGCCGGTGCAATTCCGTTCAGATGGGAGTCCCGTCCCGGCACTCCAAAGCATACTTTCTCAGAAACTTCCATCCCTCCTCTTACGCCGCCGCCGTCTTATTATTCTTCCTCTTCACATTCTACCTTCAAGGCCTCTTCCAAACCAACCCTTTTGAGCTCTATTTTCCCCCGGCGAACTTTGTCGTCCTTCTCCGCCTCTTCCTCATCCTCCTGTTCCTCACCGTCGCCGTTCGTTAGACCGAAATTCTTTAAGCGTCGTCGTCGTCACTCGTTGGATTCTCATAGCTTGCCGTTGGAGTATAACGACAACGACAACGACGGGGAGGAGGCGGTGGGGAGCTCCAATTCTCCGACGTCGACATTGGGGTATGGTGGTTGTTCGGGTAGGGGATCATTTTTGGGAGGTTGCTACCAGTTAGTGAGCGTGAAGAATGCTTTGTTGACCATTGTTGGGCATGGATCTACAACACGAGGTACTGTTAATTAG

mRNA sequence

ATGCAAACTCCAAACTACGACCAAATCTCTCAAAAATCACTCAAAATCAAGCATGAAGATAATAGATTCTTGTCGAGGGTTGTGTCAAAAGACCCTAATTCCGCCGCTAACTCCTCTTTTAGAGTGTATTACGGCGGCGCTGCCGGTGCAATTCCGTTCAGATGGGAGTCCCGTCCCGGCACTCCAAAGCATACTTTCTCAGAAACTTCCATCCCTCCTCTTACGCCGCCGCCGTCTTATTATTCTTCCTCTTCACATTCTACCTTCAAGGCCTCTTCCAAACCAACCCTTTTGAGCTCTATTTTCCCCCGGCGAACTTTGTCGTCCTTCTCCGCCTCTTCCTCATCCTCCTGTTCCTCACCGTCGCCGTTCGTTAGACCGAAATTCTTTAAGCGTCGTCGTCGTCACTCGTTGGATTCTCATAGCTTGCCGTTGGAGTATAACGACAACGACAACGACGGGGAGGAGGCGGTGGGGAGCTCCAATTCTCCGACGTCGACATTGGGGTATGGTGGTTGTTCGGGTAGGGGATCATTTTTGGGAGGTTGCTACCAGTTAGTGAGCGTGAAGAATGCTTTGTTGACCATTGTTGGGCATGGATCTACAACACGAGGTACTGTTAATTAG

Coding sequence (CDS)

ATGCAAACTCCAAACTACGACCAAATCTCTCAAAAATCACTCAAAATCAAGCATGAAGATAATAGATTCTTGTCGAGGGTTGTGTCAAAAGACCCTAATTCCGCCGCTAACTCCTCTTTTAGAGTGTATTACGGCGGCGCTGCCGGTGCAATTCCGTTCAGATGGGAGTCCCGTCCCGGCACTCCAAAGCATACTTTCTCAGAAACTTCCATCCCTCCTCTTACGCCGCCGCCGTCTTATTATTCTTCCTCTTCACATTCTACCTTCAAGGCCTCTTCCAAACCAACCCTTTTGAGCTCTATTTTCCCCCGGCGAACTTTGTCGTCCTTCTCCGCCTCTTCCTCATCCTCCTGTTCCTCACCGTCGCCGTTCGTTAGACCGAAATTCTTTAAGCGTCGTCGTCGTCACTCGTTGGATTCTCATAGCTTGCCGTTGGAGTATAACGACAACGACAACGACGGGGAGGAGGCGGTGGGGAGCTCCAATTCTCCGACGTCGACATTGGGGTATGGTGGTTGTTCGGGTAGGGGATCATTTTTGGGAGGTTGCTACCAGTTAGTGAGCGTGAAGAATGCTTTGTTGACCATTGTTGGGCATGGATCTACAACACGAGGTACTGTTAATTAG

Protein sequence

MQTPNYDQISQKSLKIKHEDNRFLSRVVSKDPNSAANSSFRVYYGGAAGAIPFRWESRPGTPKHTFSETSIPPLTPPPSYYSSSSHSTFKASSKPTLLSSIFPRRTLSSFSASSSSSCSSPSPFVRPKFFKRRRRHSLDSHSLPLEYNDNDNDGEEAVGSSNSPTSTLGYGGCSGRGSFLGGCYQLVSVKNALLTIVGHGSTTRGTVN

Homology

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BLAST of Carg05947 vs. NCBI nr
Match: KAG7033270.1 (hypothetical protein SDJN02_07324, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 406.4 bits (1043), Expect = 1.5e-109
Identity = 208/208 (100.00%), Postives = 208/208 (100.00%), Query Frame = 0


Query: 1   MQTPNYDQISQKSLKIKHEDNRFLSRVVSKDPNSAANSSFRVYYGGAAGAIPFRWESRPG 60
           MQTPNYDQISQKSLKIKHEDNRFLSRVVSKDPNSAANSSFRVYYGGAAGAIPFRWESRPG
Sbjct: 1   MQTPNYDQISQKSLKIKHEDNRFLSRVVSKDPNSAANSSFRVYYGGAAGAIPFRWESRPG 60

Query: 61  TPKHTFSETSIPPLTPPPSYYSSSSHSTFKASSKPTLLSSIFPRRTLSSFSASSSSSCSS 120
           TPKHTFSETSIPPLTPPPSYYSSSSHSTFKASSKPTLLSSIFPRRTLSSFSASSSSSCSS
Sbjct: 61  TPKHTFSETSIPPLTPPPSYYSSSSHSTFKASSKPTLLSSIFPRRTLSSFSASSSSSCSS 120

Query: 121 PSPFVRPKFFKRRRRHSLDSHSLPLEYNDNDNDGEEAVGSSNSPTSTLGYGGCSGRGSFL 180
           PSPFVRPKFFKRRRRHSLDSHSLPLEYNDNDNDGEEAVGSSNSPTSTLGYGGCSGRGSFL
Sbjct: 121 PSPFVRPKFFKRRRRHSLDSHSLPLEYNDNDNDGEEAVGSSNSPTSTLGYGGCSGRGSFL 180

Query: 181 GGCYQLVSVKNALLTIVGHGSTTRGTVN 209
           GGCYQLVSVKNALLTIVGHGSTTRGTVN
Sbjct: 181 GGCYQLVSVKNALLTIVGHGSTTRGTVN 208

[Close]

BLAST of Carg05947 vs. NCBI nr
Match: KAG6602592.1 (hypothetical protein SDJN03_07825, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 403.3 bits (1035), Expect = 1.3e-108
Identity = 207/208 (99.52%), Postives = 207/208 (99.52%), Query Frame = 0


Query: 1   MQTPNYDQISQKSLKIKHEDNRFLSRVVSKDPNSAANSSFRVYYGGAAGAIPFRWESRPG 60
           MQTPNYDQISQKSLKIKHEDNRFLSRVVSKDPNSAANSSFRVYYGGAAGAIPFRWESRPG
Sbjct: 1   MQTPNYDQISQKSLKIKHEDNRFLSRVVSKDPNSAANSSFRVYYGGAAGAIPFRWESRPG 60

Query: 61  TPKHTFSETSIPPLTPPPSYYSSSSHSTFKASSKPTLLSSIFPRRTLSSFSASSSSSCSS 120
           TPKHTFSETSIPPLTPPPSYYSSSSHSTFKASSKPTLLSSIFPRRTLSSFSASSSSSCSS
Sbjct: 61  TPKHTFSETSIPPLTPPPSYYSSSSHSTFKASSKPTLLSSIFPRRTLSSFSASSSSSCSS 120

Query: 121 PSPFVRPKFFKRRRRHSLDSHSLPLEYNDNDNDGEEAVGSSNSPTSTLGYGGCSGRGSFL 180
           PSPFVRPKFFKRRRRHSLDS SLPLEYNDNDNDGEEAVGSSNSPTSTLGYGGCSGRGSFL
Sbjct: 121 PSPFVRPKFFKRRRRHSLDSQSLPLEYNDNDNDGEEAVGSSNSPTSTLGYGGCSGRGSFL 180

Query: 181 GGCYQLVSVKNALLTIVGHGSTTRGTVN 209
           GGCYQLVSVKNALLTIVGHGSTTRGTVN
Sbjct: 181 GGCYQLVSVKNALLTIVGHGSTTRGTVN 208

[Close]

BLAST of Carg05947 vs. NCBI nr
Match: XP_022962524.1 (uncharacterized protein LOC111462925 [Cucurbita moschata])

HSP 1 Score: 391.7 bits (1005), Expect = 3.9e-105
Identity = 200/205 (97.56%), Postives = 203/205 (99.02%), Query Frame = 0


Query: 1   MQTPNYDQISQKSLKIKHEDNRFLSRVVSKDPNSAANSSFRVYYGGAAGAIPFRWESRPG 60
           MQT NYDQ+SQKSLKIKHEDNRFLSRVVSKDPNSAANSSFRVYYGGAAGAIPFRWESRPG
Sbjct: 1   MQTRNYDQVSQKSLKIKHEDNRFLSRVVSKDPNSAANSSFRVYYGGAAGAIPFRWESRPG 60

Query: 61  TPKHTFSETSIPPLTPPPSYYSSSSHSTFKASSKPTLLSSIFPRRTLSSFSASSSSSCSS 120
           TPKHTFSETSIPPLTPPPSYYSS+SHSTFKASSKPTLLSSIFPRRTLSSFSASSSSSCSS
Sbjct: 61  TPKHTFSETSIPPLTPPPSYYSSTSHSTFKASSKPTLLSSIFPRRTLSSFSASSSSSCSS 120

Query: 121 PSPFVRPKFFKRRRRHSLDSHSLPLEYNDNDNDGEEAVGSSNSPTSTLGYGGCSGRGSFL 180
           PSPFVRPKFFKRRRRHSLDS SLPLEYNDNDNDGEEA+GSSNSPTSTLGYGGCSGRGSFL
Sbjct: 121 PSPFVRPKFFKRRRRHSLDSQSLPLEYNDNDNDGEEAMGSSNSPTSTLGYGGCSGRGSFL 180

Query: 181 GGCYQLVSVKNALLTIVGHGSTTRG 206
           GGCYQLVSVKNALLTIVGHGSTTRG
Sbjct: 181 GGCYQLVSVKNALLTIVGHGSTTRG 205

[Close]

BLAST of Carg05947 vs. NCBI nr
Match: XP_023545973.1 (uncharacterized protein LOC111804354 isoform X2 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 380.2 bits (975), Expect = 1.2e-101
Identity = 196/205 (95.61%), Postives = 199/205 (97.07%), Query Frame = 0


Query: 1   MQTPNYDQISQKSLKIKHEDNRFLSRVVSKDPNSAANSSFRVYYGGAAGAIPFRWESRPG 60
           MQT NYDQISQKSL+IKHEDNRFLSR VS + NSAANSSFRVYYGGAAGAIPFRWESRPG
Sbjct: 1   MQTRNYDQISQKSLEIKHEDNRFLSRAVSNEANSAANSSFRVYYGGAAGAIPFRWESRPG 60

Query: 61  TPKHTFSETSIPPLTPPPSYYSSSSHSTFKASSKPTLLSSIFPRRTLSSFSASSSSSCSS 120
           TPKHTFSETSIPPLTPPPSYYSSSSHST KASS+PTLLSSIFPRRTLSSFSASSSSSCSS
Sbjct: 61  TPKHTFSETSIPPLTPPPSYYSSSSHSTSKASSQPTLLSSIFPRRTLSSFSASSSSSCSS 120

Query: 121 PSPFVRPKFFKRRRRHSLDSHSLPLEYNDNDNDGEEAVGSSNSPTSTLGYGGCSGRGSFL 180
           PSPFVRPKFFKRRRRHSLDS SLPLEYNDNDNDGEEAVGSSNSPTSTLGYGGCSGRGSFL
Sbjct: 121 PSPFVRPKFFKRRRRHSLDSQSLPLEYNDNDNDGEEAVGSSNSPTSTLGYGGCSGRGSFL 180

Query: 181 GGCYQLVSVKNALLTIVGHGSTTRG 206
           GGCYQLVSVKNALLTIVGHGSTTRG
Sbjct: 181 GGCYQLVSVKNALLTIVGHGSTTRG 205

[Close]

BLAST of Carg05947 vs. NCBI nr
Match: XP_023545206.1 (uncharacterized protein LOC111804354 isoform X1 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 377.9 bits (969), Expect = 5.8e-101
Identity = 195/204 (95.59%), Postives = 198/204 (97.06%), Query Frame = 0


Query: 1   MQTPNYDQISQKSLKIKHEDNRFLSRVVSKDPNSAANSSFRVYYGGAAGAIPFRWESRPG 60
           MQT NYDQISQKSL+IKHEDNRFLSR VS + NSAANSSFRVYYGGAAGAIPFRWESRPG
Sbjct: 1   MQTRNYDQISQKSLEIKHEDNRFLSRAVSNEANSAANSSFRVYYGGAAGAIPFRWESRPG 60

Query: 61  TPKHTFSETSIPPLTPPPSYYSSSSHSTFKASSKPTLLSSIFPRRTLSSFSASSSSSCSS 120
           TPKHTFSETSIPPLTPPPSYYSSSSHST KASS+PTLLSSIFPRRTLSSFSASSSSSCSS
Sbjct: 61  TPKHTFSETSIPPLTPPPSYYSSSSHSTSKASSQPTLLSSIFPRRTLSSFSASSSSSCSS 120

Query: 121 PSPFVRPKFFKRRRRHSLDSHSLPLEYNDNDNDGEEAVGSSNSPTSTLGYGGCSGRGSFL 180
           PSPFVRPKFFKRRRRHSLDS SLPLEYNDNDNDGEEAVGSSNSPTSTLGYGGCSGRGSFL
Sbjct: 121 PSPFVRPKFFKRRRRHSLDSQSLPLEYNDNDNDGEEAVGSSNSPTSTLGYGGCSGRGSFL 180

Query: 181 GGCYQLVSVKNALLTIVGHGSTTR 205
           GGCYQLVSVKNALLTIVGHGSTTR
Sbjct: 181 GGCYQLVSVKNALLTIVGHGSTTR 204

[Close]

BLAST of Carg05947 vs. ExPASy TrEMBL
Match: A0A6J1HHB7 (uncharacterized protein LOC111462925 OS=Cucurbita moschata OX=3662 GN=LOC111462925 PE=4 SV=1)

HSP 1 Score: 391.7 bits (1005), Expect = 1.9e-105
Identity = 200/205 (97.56%), Postives = 203/205 (99.02%), Query Frame = 0


Query: 1   MQTPNYDQISQKSLKIKHEDNRFLSRVVSKDPNSAANSSFRVYYGGAAGAIPFRWESRPG 60
           MQT NYDQ+SQKSLKIKHEDNRFLSRVVSKDPNSAANSSFRVYYGGAAGAIPFRWESRPG
Sbjct: 1   MQTRNYDQVSQKSLKIKHEDNRFLSRVVSKDPNSAANSSFRVYYGGAAGAIPFRWESRPG 60

Query: 61  TPKHTFSETSIPPLTPPPSYYSSSSHSTFKASSKPTLLSSIFPRRTLSSFSASSSSSCSS 120
           TPKHTFSETSIPPLTPPPSYYSS+SHSTFKASSKPTLLSSIFPRRTLSSFSASSSSSCSS
Sbjct: 61  TPKHTFSETSIPPLTPPPSYYSSTSHSTFKASSKPTLLSSIFPRRTLSSFSASSSSSCSS 120

Query: 121 PSPFVRPKFFKRRRRHSLDSHSLPLEYNDNDNDGEEAVGSSNSPTSTLGYGGCSGRGSFL 180
           PSPFVRPKFFKRRRRHSLDS SLPLEYNDNDNDGEEA+GSSNSPTSTLGYGGCSGRGSFL
Sbjct: 121 PSPFVRPKFFKRRRRHSLDSQSLPLEYNDNDNDGEEAMGSSNSPTSTLGYGGCSGRGSFL 180

Query: 181 GGCYQLVSVKNALLTIVGHGSTTRG 206
           GGCYQLVSVKNALLTIVGHGSTTRG
Sbjct: 181 GGCYQLVSVKNALLTIVGHGSTTRG 205

[Close]

BLAST of Carg05947 vs. ExPASy TrEMBL
Match: A0A6J1JKP1 (uncharacterized protein LOC111487777 OS=Cucurbita maxima OX=3661 GN=LOC111487777 PE=4 SV=1)

HSP 1 Score: 360.9 bits (925), Expect = 3.5e-96
Identity = 191/209 (91.39%), Postives = 195/209 (93.30%), Query Frame = 0


Query: 1   MQTPNYDQISQKSLKIKHEDNRFLSRVVSKDPNSAANSSFRVYYGGAAGAIPFRWESRPG 60
           MQT N DQISQKSLKIKHEDNR LSR +SK+ NSAANSSFRVYYGGAAGAIPFRWESRPG
Sbjct: 1   MQTRNDDQISQKSLKIKHEDNRLLSRALSKEANSAANSSFRVYYGGAAGAIPFRWESRPG 60

Query: 61  TPKHTFSETSIPPLTPPPSYYSSSSHSTFKASSKPTLLSSIFPRRTLSSFSASSSSSCSS 120
           TPKHTFSETSIPPLTPPPSYYSS+SHST KASSKPTLLSSIFPRRTLSSFSASSSSSCSS
Sbjct: 61  TPKHTFSETSIPPLTPPPSYYSSASHSTSKASSKPTLLSSIFPRRTLSSFSASSSSSCSS 120

Query: 121 PSPFVRPKFFKRRRRHSLDSHSLPLEYNDNDND----GEEAVGSSNSPTSTLGYGGCSGR 180
           PSPFVRPKFFKRR RHSLD+ SLPLEYN NDND    GEEAVGSSNSPTSTLGYG CSGR
Sbjct: 121 PSPFVRPKFFKRRHRHSLDAQSLPLEYNFNDNDDNNNGEEAVGSSNSPTSTLGYGVCSGR 180

Query: 181 GSFLGGCYQLVSVKNALLTIVGHGSTTRG 206
           GSFLGGCYQLVSVKNALLTIVGHGSTTRG
Sbjct: 181 GSFLGGCYQLVSVKNALLTIVGHGSTTRG 209

[Close]

BLAST of Carg05947 vs. ExPASy TrEMBL
Match: A0A5A7UC51 (Putative serine-rich protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold60G005080 PE=4 SV=1)

HSP 1 Score: 262.7 bits (670), Expect = 1.3e-66
Identity = 156/234 (66.67%), Postives = 172/234 (73.50%), Query Frame = 0


Query: 1   MQTPNYDQISQKSLKIKHEDNRFLSRVVSKDPNSAANSSFRVYYGGAAGAIPFRWESRPG 60
           MQT NYDQISQKS +I   ++RF +R +SK+ NS  NSSFRVYYGGA GAIPFRWESRPG
Sbjct: 1   MQTQNYDQISQKSSQITKHEDRFFTRALSKELNSTTNSSFRVYYGGATGAIPFRWESRPG 60

Query: 61  TPKHTFSETSIPPLTPPPSYYSSSSHSTFKASSKPTLLSSIFPR------RTLSSFSASS 120
           TPKHTFS+TSIPPLTPPPSY+ SSSHST KASSKPTLLSSIFPR      RT  SFS+SS
Sbjct: 61  TPKHTFSDTSIPPLTPPPSYF-SSSHSTSKASSKPTLLSSIFPRLTPRKSRTFPSFSSSS 120

Query: 121 ----------------SSSCSSPSPFVRPKFFKRRRRHSLDSHSLPLEYNDNDNDGEEAV 180
                           SSS SSPSPFVRPKFFK RRRH  D  SLP EY+ +D DG+E V
Sbjct: 121 GSSSSSSSLASWSSSFSSSSSSPSPFVRPKFFK-RRRHFSDIPSLPFEYSFDDKDGDEVV 180

Query: 181 GSS---NSPTSTLGY-GGCSGRGSFLGGCYQLVSVKNALLTIVGHGSTTRGTVN 209
             S   NSPTS L + GG S R S  GGCYQLVSVK ALL+IVGHGS +RGT+N
Sbjct: 181 AGSTAPNSPTSILCFGGGSSSRASLFGGCYQLVSVKKALLSIVGHGSASRGTLN 232

[Close]

BLAST of Carg05947 vs. ExPASy TrEMBL
Match: A0A1S4E178 (Uncharacterized protein OS=Cucumis melo OX=3656 GN=LOC103496610 PE=4 SV=1)

HSP 1 Score: 262.7 bits (670), Expect = 1.3e-66
Identity = 156/234 (66.67%), Postives = 172/234 (73.50%), Query Frame = 0


Query: 1   MQTPNYDQISQKSLKIKHEDNRFLSRVVSKDPNSAANSSFRVYYGGAAGAIPFRWESRPG 60
           MQT NYDQISQKS +I   ++RF +R +SK+ NS  NSSFRVYYGGA GAIPFRWESRPG
Sbjct: 1   MQTQNYDQISQKSSQITKHEDRFFTRALSKELNSTTNSSFRVYYGGATGAIPFRWESRPG 60

Query: 61  TPKHTFSETSIPPLTPPPSYYSSSSHSTFKASSKPTLLSSIFPR------RTLSSFSASS 120
           TPKHTFS+TSIPPLTPPPSY+ SSSHST KASSKPTLLSSIFPR      RT  SFS+SS
Sbjct: 61  TPKHTFSDTSIPPLTPPPSYF-SSSHSTSKASSKPTLLSSIFPRLTPRKSRTFPSFSSSS 120

Query: 121 ----------------SSSCSSPSPFVRPKFFKRRRRHSLDSHSLPLEYNDNDNDGEEAV 180
                           SSS SSPSPFVRPKFFK RRRH  D  SLP EY+ +D DG+E V
Sbjct: 121 GSSSSSSSLASWSSSFSSSSSSPSPFVRPKFFK-RRRHFSDIPSLPFEYSFDDKDGDEVV 180

Query: 181 GSS---NSPTSTLGY-GGCSGRGSFLGGCYQLVSVKNALLTIVGHGSTTRGTVN 209
             S   NSPTS L + GG S R S  GGCYQLVSVK ALL+IVGHGS +RGT+N
Sbjct: 181 AGSTAPNSPTSILCFGGGSSSRASLFGGCYQLVSVKKALLSIVGHGSASRGTLN 232

[Close]

BLAST of Carg05947 vs. ExPASy TrEMBL
Match: A0A0A0K7T8 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G014460 PE=4 SV=1)

HSP 1 Score: 261.5 bits (667), Expect = 2.9e-66
Identity = 153/233 (65.67%), Postives = 173/233 (74.25%), Query Frame = 0


Query: 1   MQTPNYDQISQKSLKIKHEDNRFLSRVVSKDPNSAANSSFRVYYGGAAGAIPFRWESRPG 60
           M+T +YDQISQKS  I   +++F +R +SK+ NS  NSSFRVYYGGA GAIPFRWESRPG
Sbjct: 1   MKTQSYDQISQKSFPITKHEDKFFTRALSKELNSTTNSSFRVYYGGATGAIPFRWESRPG 60

Query: 61  TPKHTFSETSIPPLTPPPSYYSSSSHSTFKASSKPTLLSSIFPRRT-------------- 120
           TPKHTFS+TSIPPLTPPPSY+ SSSHST KASSKPTLLSSIFPR T              
Sbjct: 61  TPKHTFSDTSIPPLTPPPSYF-SSSHSTSKASSKPTLLSSIFPRLTPRKSRTSPSFSSSS 120

Query: 121 --------LSSFSASSSSSCSSPSPFVRPKFFKRRRRHSLDSHSLPLEYNDNDNDGEEAV 180
                   L+S+S+S SSS SSPSPFVRPKFFKRRRR S D  SLP EY+ +D DG+E V
Sbjct: 121 GSSSSSSSLASWSSSFSSSSSSPSPFVRPKFFKRRRRFS-DIPSLPFEYSFDDKDGDEVV 180

Query: 181 GSS--NSPTSTLGY-GGCSGRGSFLGGCYQLVSVKNALLTIVGHGSTTRGTVN 209
             S  NSPTS L + GG S R S  GGCYQLVSVKNALL+IVGHGS +RGT+N
Sbjct: 181 AGSAPNSPTSILCFGGGSSSRASLFGGCYQLVSVKNALLSIVGHGSASRGTLN 231

[Close]

BLAST of Carg05947 vs. TAIR 10
Match: AT2G40475.1 (unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G56260.2); Has 477 Blast hits to 219 proteins in 41 species: Archae - 0; Bacteria - 4; Metazoa - 91; Fungi - 61; Plants - 144; Viruses - 0; Other Eukaryotes - 177 (source: NCBI BLink). )

HSP 1 Score: 93.6 bits (231), Expect = 2.0e-19
Identity = 83/196 (42.35%), Postives = 109/196 (55.61%), Query Frame = 0


Query: 19  EDNRFLSRVVSKDPNSAANSSFRVYYGGAAGAIPFRWESRPGTPKHT-FSET-SIPPLTP 78
           + N  +S  +    +S  NSS R+YY G A ++PF WE+RPGTPKH  FSE+  +PPLTP
Sbjct: 8   DSNGVISSKIIVKESSQVNSSSRIYYYGGA-SVPFLWETRPGTPKHALFSESLRLPPLTP 67

Query: 79  PPSYYSSSSHSTFKASSKPTLLSSIFPRRTLS--------SFSASSSSSCSSPSPFVRPK 138
           PPSYYSSSS S  K S   T+  + F +  LS        S+S++SSSS SS S    P 
Sbjct: 68  PPSYYSSSSSSGNKLSKARTIKQTRFVKTLLSRHVSRPSFSWSSASSSSSSSYSSSSPPS 127

Query: 139 FFKRRRRHSLDSHSLPLEYNDNDNDGEEAVGSSNSPTSTLGYGGCSGRGSFLGGCYQLVS 198
             + R R     +S    Y   D D EE V  S+SPTSTL Y    G  S +G      S
Sbjct: 128 KVEHRPR---KCYSCSRSYVKED-DEEEIV--SSSPTSTLCYK--RGFSSSMG------S 187

Query: 199 VKNALLTIVGHGSTTR 205
           +K AL +++ HGS+ +
Sbjct: 188 MKRALCSVLSHGSSRK 188

[Close]

BLAST of Carg05947 vs. TAIR 10
Match: AT3G56260.2 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 8 plant structures; EXPRESSED DURING: F mature embryo stage, petal differentiation and expansion stage, E expanded cotyledon stage, D bilateral stage; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G40475.1). )

HSP 1 Score: 71.6 bits (174), Expect = 8.2e-13
Identity = 70/173 (40.46%), Postives = 87/173 (50.29%), Query Frame = 0


Query: 43  YYGGAAGAIPFRWESRPGTPK-HTFSETSIP-PLTPPPSYYSSSSHSTFKASSKPTLLSS 102
           YYGGA  +IPF WESRPGTPK H  S++S+P PLTPPPSYYSS   ST +  SK     S
Sbjct: 18  YYGGA--SIPFIWESRPGTPKNHLCSDSSLPLPLTPPPSYYSSGILSTPRTQSKVRSKLS 77

Query: 103 IF---------------PRRTLS---SFSASSSSSCSSPSPFVRPKFFKRRRRHSLDSHS 162
            F                ++T S   S+S++SSSS  S SP   P   K+R  H   S  
Sbjct: 78  KFLSFSMFSDLRRSNHGSKKTASSSFSWSSTSSSSSFSSSP---PHSLKKRMSHDKKSPL 137

Query: 163 LPLEYNDNDNDGEEAVGSSNSPTSTLGYGGCSGRGSFLGGCYQLVSVKNALLT 196
           L   Y +++          +SPTSTL    C   G  LG    + SV  AL +
Sbjct: 138 LYANYEEDE--------LRSSPTSTL----CCSNGGRLGCSSSMGSVTRALFS 173

[Close]

BLAST of Carg05947 vs. TAIR 10
Match: AT5G01790.1 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 19 plant structures; EXPRESSED DURING: 13 growth stages; Has 121 Blast hits to 121 proteins in 12 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 121; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 68.2 bits (165), Expect = 9.1e-12
Identity = 53/130 (40.77%), Postives = 68/130 (52.31%), Query Frame = 0


Query: 4   PNYDQISQKSLKIKHEDNRFLSRVVSKDPN-----SAANSSFRV-YYGGAAGAIPFRWES 63
           PN       SL +K +D    S  +          SAA  SFR+ YY GAAGA+PF WES
Sbjct: 22  PNAGSERAASLSLKKQDTATFSGKLPSTKQRFSSVSAACPSFRIYYYDGAAGAVPFEWES 81

Query: 64  RPGTPKHTFSE-TSIPPLTPPPSYYSSSSHSTFKASSKPT-LLSSIFPRRT--LSSFSAS 123
            PGTPKH  SE  ++PPLTPPPS++S S     + S K T  + ++ P R   LS     
Sbjct: 82  HPGTPKHPSSELPTLPPLTPPPSHFSFSGDQIRRRSKKSTKKILALIPTRLFWLSGDHNG 141

[Close]

BLAST of Carg05947 vs. TAIR 10
Match: AT1G06930.1 (unknown protein; Has 4478 Blast hits to 355 proteins in 82 species: Archae - 0; Bacteria - 29; Metazoa - 379; Fungi - 125; Plants - 120; Viruses - 25; Other Eukaryotes - 3800 (source: NCBI BLink). )

HSP 1 Score: 64.7 bits (156), Expect = 1.0e-10
Identity = 52/127 (40.94%), Postives = 70/127 (55.12%), Query Frame = 0


Query: 43  YYGGAAGAIPFRWESRPGTPK-----------HTFSETSIP---PLTPPPSYYSSSSHST 102
           YYGG++ A+PF+WES+PGTP+           ++ S+ + P   PLTPPPSY+ +S  ST
Sbjct: 24  YYGGSSAAVPFKWESQPGTPRRLSKRSSSSGFNSDSDFNFPVSAPLTPPPSYFYASPSST 83

Query: 103 FKASSKP--TLLSSIFPR-RTLSSFSASSSSSCSS--PSPFVRPKFFKRRRRHSLDSHSL 151
              S K   TL SS+  + R++ S  ASSSSS SS  PS  +R      RRR        
Sbjct: 84  KHVSPKKTNTLFSSLLSKNRSVPSSPASSSSSSSSSVPSSPLRTSDLSNRRRSMWFESGS 143

The following BLAST results are available for this feature:

BLAST of Carg05947 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG7033270.1	1.5e-109	100.00	hypothetical protein SDJN02_07324, partial [Cucurbita argyrosperma subsp. argyro...	[more]
KAG6602592.1	1.3e-108	99.52	hypothetical protein SDJN03_07825, partial [Cucurbita argyrosperma subsp. sorori...	[more]
XP_022962524.1	3.9e-105	97.56	uncharacterized protein LOC111462925 [Cucurbita moschata]	[more]
XP_023545973.1	1.2e-101	95.61	uncharacterized protein LOC111804354 isoform X2 [Cucurbita pepo subsp. pepo]	[more]
XP_023545206.1	5.8e-101	95.59	uncharacterized protein LOC111804354 isoform X1 [Cucurbita pepo subsp. pepo]	[more]

BLAST of Carg05947 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of Carg05947 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1HHB7	1.9e-105	97.56	uncharacterized protein LOC111462925 OS=Cucurbita moschata OX=3662 GN=LOC1114629...	[more]
A0A6J1JKP1	3.5e-96	91.39	uncharacterized protein LOC111487777 OS=Cucurbita maxima OX=3661 GN=LOC111487777...	[more]
A0A5A7UC51	1.3e-66	66.67	Putative serine-rich protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_sca...	[more]
A0A1S4E178	1.3e-66	66.67	Uncharacterized protein OS=Cucumis melo OX=3656 GN=LOC103496610 PE=4 SV=1	[more]
A0A0A0K7T8	2.9e-66	65.67	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G014460 PE=4 SV=1	[more]

BLAST of Carg05947 vs. TAIR 10


Match Name	E-value	Identity	Description
AT2G40475.1	2.0e-19	42.35	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TA...	[more]
AT3G56260.2	8.2e-13	40.46	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biologic...	[more]
AT5G01790.1	9.1e-12	40.77	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biologic...	[more]
AT1G06930.1	1.0e-10	40.94	unknown protein; Has 4478 Blast hits to 355 proteins in 82 species: Archae - 0; ...	[more]

InterPro

Analysis Name: InterPro Annotations of Silver-seed gourd (SMH-JMG-627) v2
Date Performed: 2021-10-25

Position :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 141..166
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 62..86
None	No IPR available	PANTHER	PTHR33257	OS05G0165500 PROTEIN	coord: 6..185
None	No IPR available	PANTHER	PTHR33257:SF24	EXPRESSED PROTEIN	coord: 6..185

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Carg05947-RA	Carg05947-RA	mRNA