Carg05943 (gene) Silver-seed gourd (SMH-JMG-627) v2

Overview


Name	Carg05943
Type	gene
Organism	Cucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
Description	40S ribosomal protein S26
Location	Carg_Chr04: 21234923 .. 21235760 (+)
RNA-Seq Expression	Carg05943
Synteny	Carg05943

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGTAACCTAATCCCTCACCCCTCCGTTTGGATTATTCGATTTTGTCTAACATTTTCTTGACCACCTCGCTTTTGCTTCAGACTTTCAAGCGCAGGAATGGTGGACGCAACAAGCATGGACGCGGACACGTGAAATTCATCCGCTGCTCCAACTGTGGTAAATGCTGCCCCAAGGTACTTAGGGTTTTTTTTTCCTCTGTCGCCTTGGTATCTCTTTCCGATGTCAATGAATAGTTTAGGTTTAGGTTTGTCTTTCTATTGATCTTTTTTGATCTGTAATGGCCAAACAATGTACACGCATCTGGAATTTTTTTTTTCTAGACGCTGTTTCAATGTAACCGCTATCGATGTCCCGCCAACACTGAACTAAGATTCGTGTTTTTCACCAGCGGTTTTTTTTAATTTTCCTGTTCTGTTGCTGACTCTCTTGAATTTTCATGTTGCATAGGCTCAGATTTAGTACGTATTTGCAATTATCTGTGTGATTTTGGTCTACTGTTTCTCATTCTGTGATTTCTTATTGACGCGAATAGGATAAGGCCATTAAGAGGTTCCTTGTTAGGAACATCGTGGAGCAGGCAGCTGTTAGGGATGTTCAGGAAGCGTGTGTCTATGATCGTATGATCGTTTTCTTAACATGTTATTTCTTTACCTTCCATTATTACAACATGAATGATAATTTCAATGTTTGTTTCTGGTACAGAATACACTCTTCCTAAGCTATATGCTAAGATGCAGTACTGTGTTTCCTGTGCTATCCACTCTCACGTTGTGAGGGTTCGATCACGCACTGACAGGAGGAAACGTGAGCCACCACAGCGATTCATTAGACGCAGG

mRNA sequence

ATGACTTTCAAGCGCAGGAATGGTGGACGCAACAAGCATGGACGCGGACACGTGAAATTCATCCGCTGCTCCAACTGTGGTAAATGCTGCCCCAAGGATAAGGCCATTAAGAGGTTCCTTGTTAGGAACATCGTGGAGCAGGCAGCTGTTAGGGATGTTCAGGAAGCGTGTGTCTATGATCAATACACTCTTCCTAAGCTATATGCTAAGATGCAGTACTGTGTTTCCTGTGCTATCCACTCTCACGTTGTGAGGGTTCGATCACGCACTGACAGGAGGAAACGTGAGCCACCACAGCGATTCATTAGACGCAGG

Coding sequence (CDS)

ATGACTTTCAAGCGCAGGAATGGTGGACGCAACAAGCATGGACGCGGACACGTGAAATTCATCCGCTGCTCCAACTGTGGTAAATGCTGCCCCAAGGATAAGGCCATTAAGAGGTTCCTTGTTAGGAACATCGTGGAGCAGGCAGCTGTTAGGGATGTTCAGGAAGCGTGTGTCTATGATCAATACACTCTTCCTAAGCTATATGCTAAGATGCAGTACTGTGTTTCCTGTGCTATCCACTCTCACGTTGTGAGGGTTCGATCACGCACTGACAGGAGGAAACGTGAGCCACCACAGCGATTCATTAGACGCAGG

Protein sequence

MTFKRRNGGRNKHGRGHVKFIRCSNCGKCCPKDKAIKRFLVRNIVEQAAVRDVQEACVYDQYTLPKLYAKMQYCVSCAIHSHVVRVRSRTDRRKREPPQRFIRRR

Homology

[Close]

BLAST of Carg05943 vs. NCBI nr
Match: XP_004138397.1 (40S ribosomal protein S26-3 [Cucumis sativus] >KGN45831.1 hypothetical protein Csa_005395 [Cucumis sativus])

HSP 1 Score: 216.9 bits (551), Expect = 8.6e-53
Identity = 105/105 (100.00%), Postives = 105/105 (100.00%), Query Frame = 0


Query: 1   MTFKRRNGGRNKHGRGHVKFIRCSNCGKCCPKDKAIKRFLVRNIVEQAAVRDVQEACVYD 60
           MTFKRRNGGRNKHGRGHVKFIRCSNCGKCCPKDKAIKRFLVRNIVEQAAVRDVQEACVYD
Sbjct: 1   MTFKRRNGGRNKHGRGHVKFIRCSNCGKCCPKDKAIKRFLVRNIVEQAAVRDVQEACVYD 60

Query: 61  QYTLPKLYAKMQYCVSCAIHSHVVRVRSRTDRRKREPPQRFIRRR 106
           QYTLPKLYAKMQYCVSCAIHSHVVRVRSRTDRRKREPPQRFIRRR
Sbjct: 61  QYTLPKLYAKMQYCVSCAIHSHVVRVRSRTDRRKREPPQRFIRRR 105

[Close]

BLAST of Carg05943 vs. NCBI nr
Match: XP_022923523.1 (40S ribosomal protein S26-3-like [Cucurbita moschata] >XP_022989973.1 40S ribosomal protein S26-3-like [Cucurbita maxima] >XP_023529343.1 40S ribosomal protein S26-3-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 216.9 bits (551), Expect = 8.6e-53
Identity = 105/105 (100.00%), Postives = 105/105 (100.00%), Query Frame = 0


Query: 1   MTFKRRNGGRNKHGRGHVKFIRCSNCGKCCPKDKAIKRFLVRNIVEQAAVRDVQEACVYD 60
           MTFKRRNGGRNKHGRGHVKFIRCSNCGKCCPKDKAIKRFLVRNIVEQAAVRDVQEACVYD
Sbjct: 1   MTFKRRNGGRNKHGRGHVKFIRCSNCGKCCPKDKAIKRFLVRNIVEQAAVRDVQEACVYD 60

Query: 61  QYTLPKLYAKMQYCVSCAIHSHVVRVRSRTDRRKREPPQRFIRRR 106
           QYTLPKLYAKMQYCVSCAIHSHVVRVRSRTDRRKREPPQRFIRRR
Sbjct: 61  QYTLPKLYAKMQYCVSCAIHSHVVRVRSRTDRRKREPPQRFIRRR 105

[Close]

BLAST of Carg05943 vs. NCBI nr
Match: KAG6602587.1 (40S ribosomal protein S26-1, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 216.9 bits (551), Expect = 8.6e-53
Identity = 105/105 (100.00%), Postives = 105/105 (100.00%), Query Frame = 0


Query: 1   MTFKRRNGGRNKHGRGHVKFIRCSNCGKCCPKDKAIKRFLVRNIVEQAAVRDVQEACVYD 60
           MTFKRRNGGRNKHGRGHVKFIRCSNCGKCCPKDKAIKRFLVRNIVEQAAVRDVQEACVYD
Sbjct: 1   MTFKRRNGGRNKHGRGHVKFIRCSNCGKCCPKDKAIKRFLVRNIVEQAAVRDVQEACVYD 60

Query: 61  QYTLPKLYAKMQYCVSCAIHSHVVRVRSRTDRRKREPPQRFIRRR 106
           QYTLPKLYAKMQYCVSCAIHSHVVRVRSRTDRRKREPPQRFIRRR
Sbjct: 61  QYTLPKLYAKMQYCVSCAIHSHVVRVRSRTDRRKREPPQRFIRRR 105

[Close]

BLAST of Carg05943 vs. NCBI nr
Match: KAG7033266.1 (40S ribosomal protein S26-3, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 216.9 bits (551), Expect = 8.6e-53
Identity = 105/105 (100.00%), Postives = 105/105 (100.00%), Query Frame = 0


Query: 1   MTFKRRNGGRNKHGRGHVKFIRCSNCGKCCPKDKAIKRFLVRNIVEQAAVRDVQEACVYD 60
           MTFKRRNGGRNKHGRGHVKFIRCSNCGKCCPKDKAIKRFLVRNIVEQAAVRDVQEACVYD
Sbjct: 1   MTFKRRNGGRNKHGRGHVKFIRCSNCGKCCPKDKAIKRFLVRNIVEQAAVRDVQEACVYD 60

Query: 61  QYTLPKLYAKMQYCVSCAIHSHVVRVRSRTDRRKREPPQRFIRRR 106
           QYTLPKLYAKMQYCVSCAIHSHVVRVRSRTDRRKREPPQRFIRRR
Sbjct: 61  QYTLPKLYAKMQYCVSCAIHSHVVRVRSRTDRRKREPPQRFIRRR 105

[Close]

BLAST of Carg05943 vs. NCBI nr
Match: XP_022134511.1 (40S ribosomal protein S26-1-like [Momordica charantia])

HSP 1 Score: 215.7 bits (548), Expect = 1.9e-52
Identity = 104/105 (99.05%), Postives = 105/105 (100.00%), Query Frame = 0


Query: 1   MTFKRRNGGRNKHGRGHVKFIRCSNCGKCCPKDKAIKRFLVRNIVEQAAVRDVQEACVYD 60
           MTFKRRNGGRNKHGRGHVKFIRCSNCGKCCPKDKAIKRFLVRNIVEQAAVRDVQEACVYD
Sbjct: 1   MTFKRRNGGRNKHGRGHVKFIRCSNCGKCCPKDKAIKRFLVRNIVEQAAVRDVQEACVYD 60

Query: 61  QYTLPKLYAKMQYCVSCAIHSHVVRVRSRTDRRKREPPQRFIRRR 106
           QYTLPKLYAKMQYCVSCAIHSHVVRVRSRTDRRKR+PPQRFIRRR
Sbjct: 61  QYTLPKLYAKMQYCVSCAIHSHVVRVRSRTDRRKRDPPQRFIRRR 105

[Close]

BLAST of Carg05943 vs. ExPASy Swiss-Prot
Match: Q9LYK9 (40S ribosomal protein S26-3 OS=Arabidopsis thaliana OX=3702 GN=RPS26C PE=2 SV=1)

HSP 1 Score: 186.8 bits (473), Expect = 1.2e-46
Identity = 91/105 (86.67%), Postives = 96/105 (91.43%), Query Frame = 0


Query: 1   MTFKRRNGGRNKHGRGHVKFIRCSNCGKCCPKDKAIKRFLVRNIVEQAAVRDVQEACVYD 60
           MTFKRRNGGRNKH RGHVK IRCSNCGKCCPKDKAIKRF+VRNIVEQAA+RDVQEA VY+
Sbjct: 1   MTFKRRNGGRNKHNRGHVKPIRCSNCGKCCPKDKAIKRFIVRNIVEQAAIRDVQEASVYE 60

Query: 61  QYTLPKLYAKMQYCVSCAIHSHVVRVRSRTDRRKREPPQRFIRRR 106
            YTLPKLYAK QYCVSCAIHSHVVRVRSRT+RR R PP RF RR+
Sbjct: 61  GYTLPKLYAKTQYCVSCAIHSHVVRVRSRTNRRVRTPPPRFARRK 105

[Close]

BLAST of Carg05943 vs. ExPASy Swiss-Prot
Match: P49206 (40S ribosomal protein S26-1 OS=Arabidopsis thaliana OX=3702 GN=RPS26A PE=2 SV=2)

HSP 1 Score: 184.9 bits (468), Expect = 4.7e-46
Identity = 90/105 (85.71%), Postives = 95/105 (90.48%), Query Frame = 0


Query: 1   MTFKRRNGGRNKHGRGHVKFIRCSNCGKCCPKDKAIKRFLVRNIVEQAAVRDVQEACVYD 60
           MTFKRRNGGRNKH RGHV  IRCSNCGKCCPKDKAIKRF+VRNIVEQAA+RDVQEA VY+
Sbjct: 1   MTFKRRNGGRNKHNRGHVNPIRCSNCGKCCPKDKAIKRFIVRNIVEQAAIRDVQEASVYE 60

Query: 61  QYTLPKLYAKMQYCVSCAIHSHVVRVRSRTDRRKREPPQRFIRRR 106
            YTLPKLYAK QYCVSCAIHSHVVRVRSRT+RR R PP RF RR+
Sbjct: 61  GYTLPKLYAKTQYCVSCAIHSHVVRVRSRTNRRVRTPPPRFTRRK 105

[Close]

BLAST of Carg05943 vs. ExPASy Swiss-Prot
Match: Q8LPJ7 (40S ribosomal protein S26-2 OS=Arabidopsis thaliana OX=3702 GN=RPS26B PE=2 SV=2)

HSP 1 Score: 184.9 bits (468), Expect = 4.7e-46
Identity = 90/105 (85.71%), Postives = 95/105 (90.48%), Query Frame = 0


Query: 1   MTFKRRNGGRNKHGRGHVKFIRCSNCGKCCPKDKAIKRFLVRNIVEQAAVRDVQEACVYD 60
           MTFKRRNGGRNKH RGHV  IRCSNCGKCCPKDKAIKRF+VRNIVEQAA+RDVQEA VY+
Sbjct: 1   MTFKRRNGGRNKHNRGHVNPIRCSNCGKCCPKDKAIKRFIVRNIVEQAAIRDVQEASVYE 60

Query: 61  QYTLPKLYAKMQYCVSCAIHSHVVRVRSRTDRRKREPPQRFIRRR 106
            YTLPKLYAK QYCVSCAIHSHVVRVRSRT+RR R PP RF RR+
Sbjct: 61  GYTLPKLYAKTQYCVSCAIHSHVVRVRSRTNRRVRTPPPRFARRK 105

[Close]

BLAST of Carg05943 vs. ExPASy Swiss-Prot
Match: P49216 (40S ribosomal protein S26 OS=Oryza sativa subsp. japonica OX=39947 GN=RPS26 PE=2 SV=2)

HSP 1 Score: 183.7 bits (465), Expect = 1.1e-45
Identity = 86/104 (82.69%), Postives = 95/104 (91.35%), Query Frame = 0


Query: 1   MTFKRRNGGRNKHGRGHVKFIRCSNCGKCCPKDKAIKRFLVRNIVEQAAVRDVQEACVYD 60
           MTFKRRNGGRNKHGRGHVK+IRCSNC KCCPKDKAIKRF VRNIVEQAA+RDVQEACV+D
Sbjct: 1   MTFKRRNGGRNKHGRGHVKYIRCSNCAKCCPKDKAIKRFQVRNIVEQAAIRDVQEACVHD 60

Query: 61  QYTLPKLYAKMQYCVSCAIHSHVVRVRSRTDRRKREPPQRFIRR 105
            Y LPKLYAK+ +CVSCAIH+H+VRVRSR +RR R PP+RF RR
Sbjct: 61  GYVLPKLYAKVHHCVSCAIHAHIVRVRSRENRRDRRPPERFRRR 104

[Close]

BLAST of Carg05943 vs. ExPASy Swiss-Prot
Match: O45499 (40S ribosomal protein S26 OS=Caenorhabditis elegans OX=6239 GN=rps-26 PE=3 SV=1)

HSP 1 Score: 153.7 bits (387), Expect = 1.2e-36
Identity = 74/104 (71.15%), Postives = 84/104 (80.77%), Query Frame = 0


Query: 1   MTFKRRNGGRNKHGRGHVKFIRCSNCGKCCPKDKAIKRFLVRNIVEQAAVRDVQEACVYD 60
           MTFKRRN GRNK  RGHV FIRC+NCG+CCPKDKAIK+F+VRNIVE AAVRD+ +A  Y 
Sbjct: 1   MTFKRRNHGRNKKNRGHVAFIRCTNCGRCCPKDKAIKKFVVRNIVEAAAVRDIGDASAYT 60

Query: 61  QYTLPKLYAKMQYCVSCAIHSHVVRVRSRTDRRKREPPQRFIRR 105
           QY LPKLY K+ YC++CAIHS VVR RSR  RR R PP RF +R
Sbjct: 61  QYALPKLYHKLHYCIACAIHSKVVRNRSREARRDRNPPPRFGQR 104

[Close]

BLAST of Carg05943 vs. ExPASy TrEMBL
Match: A0A6J1JRW7 (40S ribosomal protein S26 OS=Cucurbita maxima OX=3661 GN=LOC111487002 PE=3 SV=1)

HSP 1 Score: 216.9 bits (551), Expect = 4.2e-53
Identity = 105/105 (100.00%), Postives = 105/105 (100.00%), Query Frame = 0


Query: 1   MTFKRRNGGRNKHGRGHVKFIRCSNCGKCCPKDKAIKRFLVRNIVEQAAVRDVQEACVYD 60
           MTFKRRNGGRNKHGRGHVKFIRCSNCGKCCPKDKAIKRFLVRNIVEQAAVRDVQEACVYD
Sbjct: 1   MTFKRRNGGRNKHGRGHVKFIRCSNCGKCCPKDKAIKRFLVRNIVEQAAVRDVQEACVYD 60

Query: 61  QYTLPKLYAKMQYCVSCAIHSHVVRVRSRTDRRKREPPQRFIRRR 106
           QYTLPKLYAKMQYCVSCAIHSHVVRVRSRTDRRKREPPQRFIRRR
Sbjct: 61  QYTLPKLYAKMQYCVSCAIHSHVVRVRSRTDRRKREPPQRFIRRR 105

[Close]

BLAST of Carg05943 vs. ExPASy TrEMBL
Match: A0A0A0KDG9 (40S ribosomal protein S26 OS=Cucumis sativus OX=3659 GN=Csa_6G014520 PE=3 SV=1)

HSP 1 Score: 216.9 bits (551), Expect = 4.2e-53
Identity = 105/105 (100.00%), Postives = 105/105 (100.00%), Query Frame = 0


Query: 1   MTFKRRNGGRNKHGRGHVKFIRCSNCGKCCPKDKAIKRFLVRNIVEQAAVRDVQEACVYD 60
           MTFKRRNGGRNKHGRGHVKFIRCSNCGKCCPKDKAIKRFLVRNIVEQAAVRDVQEACVYD
Sbjct: 1   MTFKRRNGGRNKHGRGHVKFIRCSNCGKCCPKDKAIKRFLVRNIVEQAAVRDVQEACVYD 60

Query: 61  QYTLPKLYAKMQYCVSCAIHSHVVRVRSRTDRRKREPPQRFIRRR 106
           QYTLPKLYAKMQYCVSCAIHSHVVRVRSRTDRRKREPPQRFIRRR
Sbjct: 61  QYTLPKLYAKMQYCVSCAIHSHVVRVRSRTDRRKREPPQRFIRRR 105

[Close]

BLAST of Carg05943 vs. ExPASy TrEMBL
Match: A0A6J1E9V7 (40S ribosomal protein S26 OS=Cucurbita moschata OX=3662 GN=LOC111431192 PE=3 SV=1)

HSP 1 Score: 216.9 bits (551), Expect = 4.2e-53
Identity = 105/105 (100.00%), Postives = 105/105 (100.00%), Query Frame = 0


Query: 1   MTFKRRNGGRNKHGRGHVKFIRCSNCGKCCPKDKAIKRFLVRNIVEQAAVRDVQEACVYD 60
           MTFKRRNGGRNKHGRGHVKFIRCSNCGKCCPKDKAIKRFLVRNIVEQAAVRDVQEACVYD
Sbjct: 1   MTFKRRNGGRNKHGRGHVKFIRCSNCGKCCPKDKAIKRFLVRNIVEQAAVRDVQEACVYD 60

Query: 61  QYTLPKLYAKMQYCVSCAIHSHVVRVRSRTDRRKREPPQRFIRRR 106
           QYTLPKLYAKMQYCVSCAIHSHVVRVRSRTDRRKREPPQRFIRRR
Sbjct: 61  QYTLPKLYAKMQYCVSCAIHSHVVRVRSRTDRRKREPPQRFIRRR 105

[Close]

BLAST of Carg05943 vs. ExPASy TrEMBL
Match: A0A6J1K0V7 (40S ribosomal protein S26 OS=Cucurbita maxima OX=3661 GN=LOC111489626 PE=3 SV=1)

HSP 1 Score: 215.7 bits (548), Expect = 9.3e-53
Identity = 104/105 (99.05%), Postives = 105/105 (100.00%), Query Frame = 0


Query: 1   MTFKRRNGGRNKHGRGHVKFIRCSNCGKCCPKDKAIKRFLVRNIVEQAAVRDVQEACVYD 60
           MTFKRRNGGRNKHGRGHVKFIRCSNCGKCCPKDKAIKRFLVRNIVEQAAVRDVQEACVYD
Sbjct: 1   MTFKRRNGGRNKHGRGHVKFIRCSNCGKCCPKDKAIKRFLVRNIVEQAAVRDVQEACVYD 60

Query: 61  QYTLPKLYAKMQYCVSCAIHSHVVRVRSRTDRRKREPPQRFIRRR 106
           QYTLPKLYAKMQYCVSCAIHSHVVRVRSRTDRRKR+PPQRFIRRR
Sbjct: 61  QYTLPKLYAKMQYCVSCAIHSHVVRVRSRTDRRKRDPPQRFIRRR 105

[Close]

BLAST of Carg05943 vs. ExPASy TrEMBL
Match: A0A6J1BXZ8 (40S ribosomal protein S26 OS=Momordica charantia OX=3673 GN=LOC111006736 PE=3 SV=1)

HSP 1 Score: 215.7 bits (548), Expect = 9.3e-53
Identity = 104/105 (99.05%), Postives = 105/105 (100.00%), Query Frame = 0


Query: 1   MTFKRRNGGRNKHGRGHVKFIRCSNCGKCCPKDKAIKRFLVRNIVEQAAVRDVQEACVYD 60
           MTFKRRNGGRNKHGRGHVKFIRCSNCGKCCPKDKAIKRFLVRNIVEQAAVRDVQEACVYD
Sbjct: 1   MTFKRRNGGRNKHGRGHVKFIRCSNCGKCCPKDKAIKRFLVRNIVEQAAVRDVQEACVYD 60

Query: 61  QYTLPKLYAKMQYCVSCAIHSHVVRVRSRTDRRKREPPQRFIRRR 106
           QYTLPKLYAKMQYCVSCAIHSHVVRVRSRTDRRKR+PPQRFIRRR
Sbjct: 61  QYTLPKLYAKMQYCVSCAIHSHVVRVRSRTDRRKRDPPQRFIRRR 105

[Close]

BLAST of Carg05943 vs. TAIR 10
Match: AT3G56340.1 (Ribosomal protein S26e family protein )

HSP 1 Score: 186.8 bits (473), Expect = 8.9e-48
Identity = 91/105 (86.67%), Postives = 96/105 (91.43%), Query Frame = 0


Query: 1   MTFKRRNGGRNKHGRGHVKFIRCSNCGKCCPKDKAIKRFLVRNIVEQAAVRDVQEACVYD 60
           MTFKRRNGGRNKH RGHVK IRCSNCGKCCPKDKAIKRF+VRNIVEQAA+RDVQEA VY+
Sbjct: 1   MTFKRRNGGRNKHNRGHVKPIRCSNCGKCCPKDKAIKRFIVRNIVEQAAIRDVQEASVYE 60

Query: 61  QYTLPKLYAKMQYCVSCAIHSHVVRVRSRTDRRKREPPQRFIRRR 106
            YTLPKLYAK QYCVSCAIHSHVVRVRSRT+RR R PP RF RR+
Sbjct: 61  GYTLPKLYAKTQYCVSCAIHSHVVRVRSRTNRRVRTPPPRFARRK 105

[Close]

BLAST of Carg05943 vs. TAIR 10
Match: AT2G40510.1 (Ribosomal protein S26e family protein )

HSP 1 Score: 184.9 bits (468), Expect = 3.4e-47
Identity = 90/105 (85.71%), Postives = 95/105 (90.48%), Query Frame = 0


Query: 1   MTFKRRNGGRNKHGRGHVKFIRCSNCGKCCPKDKAIKRFLVRNIVEQAAVRDVQEACVYD 60
           MTFKRRNGGRNKH RGHV  IRCSNCGKCCPKDKAIKRF+VRNIVEQAA+RDVQEA VY+
Sbjct: 1   MTFKRRNGGRNKHNRGHVNPIRCSNCGKCCPKDKAIKRFIVRNIVEQAAIRDVQEASVYE 60

Query: 61  QYTLPKLYAKMQYCVSCAIHSHVVRVRSRTDRRKREPPQRFIRRR 106
            YTLPKLYAK QYCVSCAIHSHVVRVRSRT+RR R PP RF RR+
Sbjct: 61  GYTLPKLYAKTQYCVSCAIHSHVVRVRSRTNRRVRTPPPRFARRK 105

[Close]

BLAST of Carg05943 vs. TAIR 10
Match: AT2G40590.1 (Ribosomal protein S26e family protein )

HSP 1 Score: 184.9 bits (468), Expect = 3.4e-47
Identity = 90/105 (85.71%), Postives = 95/105 (90.48%), Query Frame = 0


Query: 1   MTFKRRNGGRNKHGRGHVKFIRCSNCGKCCPKDKAIKRFLVRNIVEQAAVRDVQEACVYD 60
           MTFKRRNGGRNKH RGHV  IRCSNCGKCCPKDKAIKRF+VRNIVEQAA+RDVQEA VY+
Sbjct: 1   MTFKRRNGGRNKHNRGHVNPIRCSNCGKCCPKDKAIKRFIVRNIVEQAAIRDVQEASVYE 60

Query: 61  QYTLPKLYAKMQYCVSCAIHSHVVRVRSRTDRRKREPPQRFIRRR 106
            YTLPKLYAK QYCVSCAIHSHVVRVRSRT+RR R PP RF RR+
Sbjct: 61  GYTLPKLYAKTQYCVSCAIHSHVVRVRSRTNRRVRTPPPRFTRRK 105

The following BLAST results are available for this feature:

BLAST of Carg05943 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_004138397.1	8.6e-53	100.00	40S ribosomal protein S26-3 [Cucumis sativus] >KGN45831.1 hypothetical protein C...	[more]
XP_022923523.1	8.6e-53	100.00	40S ribosomal protein S26-3-like [Cucurbita moschata] >XP_022989973.1 40S riboso...	[more]
KAG6602587.1	8.6e-53	100.00	40S ribosomal protein S26-1, partial [Cucurbita argyrosperma subsp. sororia]	[more]
KAG7033266.1	8.6e-53	100.00	40S ribosomal protein S26-3, partial [Cucurbita argyrosperma subsp. argyrosperma...	[more]
XP_022134511.1	1.9e-52	99.05	40S ribosomal protein S26-1-like [Momordica charantia]	[more]

BLAST of Carg05943 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9LYK9	1.2e-46	86.67	40S ribosomal protein S26-3 OS=Arabidopsis thaliana OX=3702 GN=RPS26C PE=2 SV=1	[more]
P49206	4.7e-46	85.71	40S ribosomal protein S26-1 OS=Arabidopsis thaliana OX=3702 GN=RPS26A PE=2 SV=2	[more]
Q8LPJ7	4.7e-46	85.71	40S ribosomal protein S26-2 OS=Arabidopsis thaliana OX=3702 GN=RPS26B PE=2 SV=2	[more]
P49216	1.1e-45	82.69	40S ribosomal protein S26 OS=Oryza sativa subsp. japonica OX=39947 GN=RPS26 PE=2...	[more]
O45499	1.2e-36	71.15	40S ribosomal protein S26 OS=Caenorhabditis elegans OX=6239 GN=rps-26 PE=3 SV=1	[more]

BLAST of Carg05943 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1JRW7	4.2e-53	100.00	40S ribosomal protein S26 OS=Cucurbita maxima OX=3661 GN=LOC111487002 PE=3 SV=1	[more]
A0A0A0KDG9	4.2e-53	100.00	40S ribosomal protein S26 OS=Cucumis sativus OX=3659 GN=Csa_6G014520 PE=3 SV=1	[more]
A0A6J1E9V7	4.2e-53	100.00	40S ribosomal protein S26 OS=Cucurbita moschata OX=3662 GN=LOC111431192 PE=3 SV=...	[more]
A0A6J1K0V7	9.3e-53	99.05	40S ribosomal protein S26 OS=Cucurbita maxima OX=3661 GN=LOC111489626 PE=3 SV=1	[more]
A0A6J1BXZ8	9.3e-53	99.05	40S ribosomal protein S26 OS=Momordica charantia OX=3673 GN=LOC111006736 PE=3 SV...	[more]

BLAST of Carg05943 vs. TAIR 10


Match Name	E-value	Identity	Description
AT3G56340.1	8.9e-48	86.67	Ribosomal protein S26e family protein	[more]
AT2G40510.1	3.4e-47	85.71	Ribosomal protein S26e family protein	[more]
AT2G40590.1	3.4e-47	85.71	Ribosomal protein S26e family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Silver-seed gourd (SMH-JMG-627) v2
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR038551	Ribosomal protein S26e superfamily	GENE3D	3.30.1740.20	Ribosomal protein S26e	coord: 1..105 e-value: 5.8E-57 score: 193.0
IPR000892	Ribosomal protein S26e	PFAM	PF01283	Ribosomal_S26e	coord: 1..104 e-value: 2.1E-54 score: 182.5
IPR000892	Ribosomal protein S26e	PANTHER	PTHR12538	40S RIBOSOMAL PROTEIN S26	coord: 1..105
IPR000892	Ribosomal protein S26e	PROSITE	PS00733	RIBOSOMAL_S26E	coord: 73..80
None	No IPR available	PANTHER	PTHR12538:SF16	40S RIBOSOMAL PROTEIN S26	coord: 1..105

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Carg05943-RA	Carg05943-RA	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0019430	removal of superoxide radicals
biological_process	GO:0006412	translation
cellular_component	GO:0022627	cytosolic small ribosomal subunit
cellular_component	GO:0016021	integral component of membrane
cellular_component	GO:0005840	ribosome
molecular_function	GO:0046872	metal ion binding
molecular_function	GO:0003729	mRNA binding
molecular_function	GO:0003735	structural constituent of ribosome
molecular_function	GO:0004784	superoxide dismutase activity