Carg05940 (gene) Silver-seed gourd (SMH-JMG-627) v2

Overview


Name	Carg05940
Type	gene
Organism	Cucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
Description	RING-H2 finger protein
Location	Carg_Chr04: 21224011 .. 21224631 (-)
RNA-Seq Expression	Carg05940
Synteny	Carg05940

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCGTCCGATCACCACCCTCACCGTCTCCACCGTCTCCACCGTCTCCACCGCCTCCTCCTTGGCGTCGATGCGACGGCGCCGCCGTCCAATGGAACCGGAACCAAAAATTCGTACAGCAACGAAGCGAATTTCGACACGAACATGGTGATAATCCTTGCCGCGTTACTCTGCGCCTTGATTTGCGCTCTCGGATTGAACTCAATCGTTCGGTGTGCCCTCCGCTGTACTCGGCGGTTCACCTTCGAGAACGGTGGCGGCTCCGCCACGCGCCTCACTGCCGGAGGGCTGAAGAAAAGCGCATTACGCCAAATTCCTGTCGCTGTTTACGGGTCGGAGTCGGGTAAAGGGATCCGAGAAACGGATTGCCCTATCTGCCTTGGGGATTTCATCGTCGGTGAGAAAATCAAAGTTCTCCCAAAATGTAACCATGAATTTCACGTTCGATGTATCGACACCTGGTTGGCTTCCCACACGTCGTGTCCGACATGTCGTCAATCGCTTCTCGAACAACAGTCAAATCCACAACCTGCGGAACCTGAAGTCGGAAACCAACCCGCCGGCAATTCATCGGCCGGCGGCCAAGGTGAGATATCCATAACTGTAGATGAAATTAGCTGA

mRNA sequence

ATGGCGTCCGATCACCACCCTCACCGTCTCCACCGTCTCCACCGTCTCCACCGCCTCCTCCTTGGCGTCGATGCGACGGCGCCGCCGTCCAATGGAACCGGAACCAAAAATTCGTACAGCAACGAAGCGAATTTCGACACGAACATGGTGATAATCCTTGCCGCGTTACTCTGCGCCTTGATTTGCGCTCTCGGATTGAACTCAATCGTTCGGTGTGCCCTCCGCTGTACTCGGCGGTTCACCTTCGAGAACGGTGGCGGCTCCGCCACGCGCCTCACTGCCGGAGGGCTGAAGAAAAGCGCATTACGCCAAATTCCTGTCGCTGTTTACGGGTCGGAGTCGGGTAAAGGGATCCGAGAAACGGATTGCCCTATCTGCCTTGGGGATTTCATCGTCGGTGAGAAAATCAAAGTTCTCCCAAAATGTAACCATGAATTTCACGTTCGATGTATCGACACCTGGTTGGCTTCCCACACGTCGTGTCCGACATGTCGTCAATCGCTTCTCGAACAACAGTCAAATCCACAACCTGCGGAACCTGAAGTCGGAAACCAACCCGCCGGCAATTCATCGGCCGGCGGCCAAGGTGAGATATCCATAACTGTAGATGAAATTAGCTGA

Coding sequence (CDS)

ATGGCGTCCGATCACCACCCTCACCGTCTCCACCGTCTCCACCGTCTCCACCGCCTCCTCCTTGGCGTCGATGCGACGGCGCCGCCGTCCAATGGAACCGGAACCAAAAATTCGTACAGCAACGAAGCGAATTTCGACACGAACATGGTGATAATCCTTGCCGCGTTACTCTGCGCCTTGATTTGCGCTCTCGGATTGAACTCAATCGTTCGGTGTGCCCTCCGCTGTACTCGGCGGTTCACCTTCGAGAACGGTGGCGGCTCCGCCACGCGCCTCACTGCCGGAGGGCTGAAGAAAAGCGCATTACGCCAAATTCCTGTCGCTGTTTACGGGTCGGAGTCGGGTAAAGGGATCCGAGAAACGGATTGCCCTATCTGCCTTGGGGATTTCATCGTCGGTGAGAAAATCAAAGTTCTCCCAAAATGTAACCATGAATTTCACGTTCGATGTATCGACACCTGGTTGGCTTCCCACACGTCGTGTCCGACATGTCGTCAATCGCTTCTCGAACAACAGTCAAATCCACAACCTGCGGAACCTGAAGTCGGAAACCAACCCGCCGGCAATTCATCGGCCGGCGGCCAAGGTGAGATATCCATAACTGTAGATGAAATTAGCTGA

Protein sequence

MASDHHPHRLHRLHRLHRLLLGVDATAPPSNGTGTKNSYSNEANFDTNMVIILAALLCALICALGLNSIVRCALRCTRRFTFENGGGSATRLTAGGLKKSALRQIPVAVYGSESGKGIRETDCPICLGDFIVGEKIKVLPKCNHEFHVRCIDTWLASHTSCPTCRQSLLEQQSNPQPAEPEVGNQPAGNSSAGGQGEISITVDEIS

Homology

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BLAST of Carg05940 vs. NCBI nr
Match: KAG7033263.1 (RING-H2 finger protein ATL72, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 418.7 bits (1075), Expect = 2.9e-113
Identity = 206/206 (100.00%), Postives = 206/206 (100.00%), Query Frame = 0


Query: 1   MASDHHPHRLHRLHRLHRLLLGVDATAPPSNGTGTKNSYSNEANFDTNMVIILAALLCAL 60
           MASDHHPHRLHRLHRLHRLLLGVDATAPPSNGTGTKNSYSNEANFDTNMVIILAALLCAL
Sbjct: 1   MASDHHPHRLHRLHRLHRLLLGVDATAPPSNGTGTKNSYSNEANFDTNMVIILAALLCAL 60

Query: 61  ICALGLNSIVRCALRCTRRFTFENGGGSATRLTAGGLKKSALRQIPVAVYGSESGKGIRE 120
           ICALGLNSIVRCALRCTRRFTFENGGGSATRLTAGGLKKSALRQIPVAVYGSESGKGIRE
Sbjct: 61  ICALGLNSIVRCALRCTRRFTFENGGGSATRLTAGGLKKSALRQIPVAVYGSESGKGIRE 120

Query: 121 TDCPICLGDFIVGEKIKVLPKCNHEFHVRCIDTWLASHTSCPTCRQSLLEQQSNPQPAEP 180
           TDCPICLGDFIVGEKIKVLPKCNHEFHVRCIDTWLASHTSCPTCRQSLLEQQSNPQPAEP
Sbjct: 121 TDCPICLGDFIVGEKIKVLPKCNHEFHVRCIDTWLASHTSCPTCRQSLLEQQSNPQPAEP 180

Query: 181 EVGNQPAGNSSAGGQGEISITVDEIS 207
           EVGNQPAGNSSAGGQGEISITVDEIS
Sbjct: 181 EVGNQPAGNSSAGGQGEISITVDEIS 206

[Close]

BLAST of Carg05940 vs. NCBI nr
Match: XP_023529302.1 (RING-H2 finger protein ATL73-like isoform X2 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 386.3 bits (991), Expect = 1.6e-103
Identity = 194/207 (93.72%), Postives = 197/207 (95.17%), Query Frame = 0


Query: 1   MASDHHPHRLHRLHRLHRLLLGVDATAPPSNGTGTKNSYSNEANFDTNMVIILAALLCAL 60
           MASDHHPH LHRLHRLHRLLLGVDATAPPSNGT TKNSYSNEANFDTNMVIILAALLCAL
Sbjct: 1   MASDHHPHCLHRLHRLHRLLLGVDATAPPSNGTRTKNSYSNEANFDTNMVIILAALLCAL 60

Query: 61  ICALGLNSIVRCALRCTRRFTFENGGGSATRLTAGGLKKSALRQIPVAVYGSESGKGIRE 120
           ICALGLNSIVRCALRCTRRFTFENGGGS TRLTA GLKKSALRQIPVAVYGSESGKGIRE
Sbjct: 61  ICALGLNSIVRCALRCTRRFTFENGGGSTTRLTARGLKKSALRQIPVAVYGSESGKGIRE 120

Query: 121 TDCPICLGDFIVGEKIKVLPKCNHEFHVRCIDTWLASHTSCPTCRQSLLEQQSNPQPAEP 180
           TDCPICLGDFIVGEKIKVLPKCNHEFHVRCIDTWLASHTSCPTCRQSLLEQQSNPQPAEP
Sbjct: 121 TDCPICLGDFIVGEKIKVLPKCNHEFHVRCIDTWLASHTSCPTCRQSLLEQQSNPQPAEP 180

Query: 181 EVGNQPAGNSSAGGQGE-ISITVDEIS 207
           EVGNQPAGNSSAG Q + I I +D +S
Sbjct: 181 EVGNQPAGNSSAGDQVKTIQIYLDLLS 207

[Close]

BLAST of Carg05940 vs. NCBI nr
Match: XP_023529310.1 (RING-H2 finger protein ATL74-like isoform X3 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 386.0 bits (990), Expect = 2.1e-103
Identity = 191/198 (96.46%), Postives = 191/198 (96.46%), Query Frame = 0


Query: 1   MASDHHPHRLHRLHRLHRLLLGVDATAPPSNGTGTKNSYSNEANFDTNMVIILAALLCAL 60
           MASDHHPH LHRLHRLHRLLLGVDATAPPSNGT TKNSYSNEANFDTNMVIILAALLCAL
Sbjct: 1   MASDHHPHCLHRLHRLHRLLLGVDATAPPSNGTRTKNSYSNEANFDTNMVIILAALLCAL 60

Query: 61  ICALGLNSIVRCALRCTRRFTFENGGGSATRLTAGGLKKSALRQIPVAVYGSESGKGIRE 120
           ICALGLNSIVRCALRCTRRFTFENGGGS TRLTA GLKKSALRQIPVAVYGSESGKGIRE
Sbjct: 61  ICALGLNSIVRCALRCTRRFTFENGGGSTTRLTARGLKKSALRQIPVAVYGSESGKGIRE 120

Query: 121 TDCPICLGDFIVGEKIKVLPKCNHEFHVRCIDTWLASHTSCPTCRQSLLEQQSNPQPAEP 180
           TDCPICLGDFIVGEKIKVLPKCNHEFHVRCIDTWLASHTSCPTCRQSLLEQQSNPQPAEP
Sbjct: 121 TDCPICLGDFIVGEKIKVLPKCNHEFHVRCIDTWLASHTSCPTCRQSLLEQQSNPQPAEP 180

Query: 181 EVGNQPAGNSSAGGQGEI 199
           EVGNQPAGNSSAG Q  I
Sbjct: 181 EVGNQPAGNSSAGDQVSI 198

[Close]

BLAST of Carg05940 vs. NCBI nr
Match: XP_023529295.1 (RING-H2 finger protein ATL74-like isoform X1 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 385.6 bits (989), Expect = 2.7e-103
Identity = 190/195 (97.44%), Postives = 190/195 (97.44%), Query Frame = 0


Query: 1   MASDHHPHRLHRLHRLHRLLLGVDATAPPSNGTGTKNSYSNEANFDTNMVIILAALLCAL 60
           MASDHHPH LHRLHRLHRLLLGVDATAPPSNGT TKNSYSNEANFDTNMVIILAALLCAL
Sbjct: 1   MASDHHPHCLHRLHRLHRLLLGVDATAPPSNGTRTKNSYSNEANFDTNMVIILAALLCAL 60

Query: 61  ICALGLNSIVRCALRCTRRFTFENGGGSATRLTAGGLKKSALRQIPVAVYGSESGKGIRE 120
           ICALGLNSIVRCALRCTRRFTFENGGGS TRLTA GLKKSALRQIPVAVYGSESGKGIRE
Sbjct: 61  ICALGLNSIVRCALRCTRRFTFENGGGSTTRLTARGLKKSALRQIPVAVYGSESGKGIRE 120

Query: 121 TDCPICLGDFIVGEKIKVLPKCNHEFHVRCIDTWLASHTSCPTCRQSLLEQQSNPQPAEP 180
           TDCPICLGDFIVGEKIKVLPKCNHEFHVRCIDTWLASHTSCPTCRQSLLEQQSNPQPAEP
Sbjct: 121 TDCPICLGDFIVGEKIKVLPKCNHEFHVRCIDTWLASHTSCPTCRQSLLEQQSNPQPAEP 180

Query: 181 EVGNQPAGNSSAGGQ 196
           EVGNQPAGNSSAG Q
Sbjct: 181 EVGNQPAGNSSAGDQ 195

[Close]

BLAST of Carg05940 vs. NCBI nr
Match: XP_022963000.1 (RING-H2 finger protein ATL74-like isoform X1 [Cucurbita moschata])

HSP 1 Score: 383.6 bits (984), Expect = 1.0e-102
Identity = 194/207 (93.72%), Postives = 197/207 (95.17%), Query Frame = 0


Query: 1   MASDHHPHRLHRLHRLHRLLLGVDATAPPSNGTGTKNSYSNEANFDTNMVIILAALLCAL 60
           MASDHHP   HRLHRLHRLLLGVDATAPPSNGT TKNSYSNEANFDTNMVIILAALLCAL
Sbjct: 1   MASDHHP---HRLHRLHRLLLGVDATAPPSNGTRTKNSYSNEANFDTNMVIILAALLCAL 60

Query: 61  ICALGLNSIVRCALRCTRRFTFENGGGSATRLTAGGLKKSALRQIPVAVYGSESGKGIRE 120
           ICALGLNSIVRCALRCTRRFTFENGGGSATRLTAGGLKKSALRQIPVAVYGSESGKGIRE
Sbjct: 61  ICALGLNSIVRCALRCTRRFTFENGGGSATRLTAGGLKKSALRQIPVAVYGSESGKGIRE 120

Query: 121 TDCPICLGDFIVGEKIKVLPKCNHEFHVRCIDTWLASHTSCPTCRQSLLEQQSNPQPAEP 180
           TDCPICLGDFIVGEKIKVLPKCNHEFHVRCIDTWL SHTSCPTCRQSLLEQQSNPQPAEP
Sbjct: 121 TDCPICLGDFIVGEKIKVLPKCNHEFHVRCIDTWLVSHTSCPTCRQSLLEQQSNPQPAEP 180

Query: 181 EVGNQPAGNSSAGGQGE-ISITVDEIS 207
           EVGNQPAGNSSAGGQ + I I +D +S
Sbjct: 181 EVGNQPAGNSSAGGQVKTIQIYLDLLS 204

[Close]

BLAST of Carg05940 vs. ExPASy Swiss-Prot
Match: Q9SG96 (RING-H2 finger protein ATL72 OS=Arabidopsis thaliana OX=3702 GN=ATL72 PE=2 SV=1)

HSP 1 Score: 177.6 bits (449), Expect = 1.5e-43
Identity = 99/166 (59.64%), Postives = 114/166 (68.67%), Query Frame = 0


Query: 18  RLLLGVDATAPPSNGTGTKNSYSNEANFDTNMVIILAALLCALICALGLNSIVRCALRCT 77
           RLLL   A A P+N         N+  FDTNMVIILAALLCALICAL LNS +RC LR T
Sbjct: 3   RLLLEPQANA-PANANPKPKGGINDTYFDTNMVIILAALLCALICALSLNSALRCVLRIT 62

Query: 78  RRFTFE-------NGGGSATRLTAG-GLKKSALRQIPVAVYGSESGKGIRETDCPICLGD 137
           RRFT +       N   +  RL A  GLKK AL+QIPV +YGS     ++ T+C ICLGD
Sbjct: 63  RRFTSDDQVSNASNANANLGRLAAATGLKKQALKQIPVGLYGS-GIIDMKATECLICLGD 122

Query: 138 FIVGEKIKVLPKCNHEFHVRCIDTWLASHTSCPTCRQSLLEQQSNP 176
           F  GEK++VLPKCNH FHVRCIDTWL S +SCPTCRQSLL +Q +P
Sbjct: 123 FEDGEKVRVLPKCNHGFHVRCIDTWLLSRSSCPTCRQSLLLEQPSP 166

[Close]

BLAST of Carg05940 vs. ExPASy Swiss-Prot
Match: Q9FLC6 (RING-H2 finger protein ATL73 OS=Arabidopsis thaliana OX=3702 GN=ATL73 PE=2 SV=1)

HSP 1 Score: 174.1 bits (440), Expect = 1.6e-42
Identity = 92/164 (56.10%), Postives = 110/164 (67.07%), Query Frame = 0


Query: 18  RLLLGVDATA--------PPSNGTGTKNSYSNEANFDTNMVIILAALLCALICALGLNSI 77
           R LL   AT         P + G    N+  N A+ DT+MVIILAALLCALICALG+NS+
Sbjct: 3   RFLLATQATPTISATDANPRTLGDSVSNN-KNIASMDTHMVIILAALLCALICALGINSV 62

Query: 78  VRCALRCTRRFTFENGGGSATRLTAGGLKKSALRQIPVAVYGSESGKGIRETDCPICLGD 137
           +RC LRCTRRFT            A G+KK AL+ IPV  Y  E    ++ T+C ICLGD
Sbjct: 63  LRCVLRCTRRFTPNEDPVDTNANVAKGIKKRALKVIPVDSYSPE--LKMKATECLICLGD 122

Query: 138 FIVGEKIKVLPKCNHEFHVRCIDTWLASHTSCPTCRQSLLEQQS 174
           F+ GE ++VLPKCNH FHV+CIDTWL SH+SCPTCRQSLLE Q+
Sbjct: 123 FVEGETVRVLPKCNHGFHVKCIDTWLLSHSSCPTCRQSLLEHQT 163

[Close]

BLAST of Carg05940 vs. ExPASy Swiss-Prot
Match: Q9LZV8 (RING-H2 finger protein ATL74 OS=Arabidopsis thaliana OX=3702 GN=ATL74 PE=2 SV=1)

HSP 1 Score: 170.6 bits (431), Expect = 1.8e-41
Identity = 85/155 (54.84%), Postives = 106/155 (68.39%), Query Frame = 0


Query: 16  LHRLLLGVDATAPPSNGTGTKNSYSNEANFDTNMVIILAALLCALICALGLNSIVRCALR 75
           +HRLLL        ++G+G  + Y+ + NFD NMVIILAALLCALI ALGLNSI+RCA+R
Sbjct: 1   MHRLLLESHGGGNETSGSGGGDGYTRDMNFDANMVIILAALLCALILALGLNSILRCAMR 60

Query: 76  CTRRFTFENGGGSATRLTAGGLKKSALRQIPVAVYGSESGKGIRETDCPICLGDFIVGEK 135
           C   F   +   + T     GLKK  L++ PVA YGS   K I  T+C ICLG+F  GE+
Sbjct: 61  C--GFGLSSSAAAGTVADRAGLKKRELKKFPVAEYGSGEVK-IAATECAICLGEFADGER 120

Query: 136 IKVLPKCNHEFHVRCIDTWLASHTSCPTCRQSLLE 171
           ++VLP CNH FH+ CIDTWL SH+SCP CR SL+E
Sbjct: 121 VRVLPPCNHSFHMSCIDTWLVSHSSCPNCRHSLIE 152

[Close]

BLAST of Carg05940 vs. ExPASy Swiss-Prot
Match: Q6NQG7 (RING-H2 finger protein ATL78 OS=Arabidopsis thaliana OX=3702 GN=ATL78 PE=2 SV=1)

HSP 1 Score: 149.4 bits (376), Expect = 4.3e-35
Identity = 68/139 (48.92%), Postives = 95/139 (68.35%), Query Frame = 0


Query: 33  TGTKNSYSNEANFDTNMVIILAALLCALICALGLNSIVRCALRCTRRFTFENGGGS-ATR 92
           T   + Y  + NFD N+V++L+ LLCAL+C+LGLNSI+RCALRC+     E GG +   R
Sbjct: 40  TPAPSPYVGDNNFDANVVMVLSVLLCALVCSLGLNSIIRCALRCSNLVPSEAGGDNYPVR 99

Query: 93  LTAGGLKKSALRQIPVAVYGSESGKGIRETDCPICLGDFIVGEKIKVLPKCNHEFHVRCI 152
           LT  G+K+ AL+      Y +E      +T+C ICL +F+  E++K+LP C+H FHVRCI
Sbjct: 100 LTNTGVKRKALKSFQTVSYSTELNLPGLDTECAICLSEFVAEERVKLLPTCHHGFHVRCI 159

Query: 153 DTWLASHTSCPTCRQSLLE 171
           D WL+SH+SCPTCR  L++
Sbjct: 160 DKWLSSHSSCPTCRHCLIQ 178

[Close]

BLAST of Carg05940 vs. ExPASy Swiss-Prot
Match: P0C034 (RING-H2 finger protein ATL10 OS=Arabidopsis thaliana OX=3702 GN=ATL10 PE=2 SV=1)

HSP 1 Score: 128.3 bits (321), Expect = 1.0e-28
Identity = 62/134 (46.27%), Postives = 87/134 (64.93%), Query Frame = 0


Query: 40  SNEANFDTNMVIILAALLCALICALGLNSIVRCALRCTRRFTFEN--GGGSATRLTAG-G 99
           ++E N   N++++L+ L+C +IC LGL+ I+RCALR + RF         S+TR ++  G
Sbjct: 49  THENNLSGNVMMLLSILICGIICCLGLHYIIRCALRRSTRFMISEPVPSLSSTRGSSNKG 108

Query: 100 LKKSALRQIPVAVYGSESGKGIRETDCPICLGDFIVGEKIKVLPKCNHEFHVRCIDTWLA 159
           +KK ALR  PV  Y  E      + +C ICL DF+ GE++++LPKCNH FHVRCID WL 
Sbjct: 109 IKKKALRMFPVVSYSPEMNLPGLDEECVICLSDFVSGEQLRLLPKCNHGFHVRCIDKWLQ 168

Query: 160 SHTSCPTCRQSLLE 171
            H +CP CR  L+E
Sbjct: 169 QHLTCPKCRNCLVE 182

[Close]

BLAST of Carg05940 vs. ExPASy TrEMBL
Match: A0A6J1HGR5 (RING-H2 finger protein ATL74-like isoform X1 OS=Cucurbita moschata OX=3662 GN=LOC111463337 PE=4 SV=1)

HSP 1 Score: 383.6 bits (984), Expect = 5.0e-103
Identity = 194/207 (93.72%), Postives = 197/207 (95.17%), Query Frame = 0


Query: 1   MASDHHPHRLHRLHRLHRLLLGVDATAPPSNGTGTKNSYSNEANFDTNMVIILAALLCAL 60
           MASDHHP   HRLHRLHRLLLGVDATAPPSNGT TKNSYSNEANFDTNMVIILAALLCAL
Sbjct: 1   MASDHHP---HRLHRLHRLLLGVDATAPPSNGTRTKNSYSNEANFDTNMVIILAALLCAL 60

Query: 61  ICALGLNSIVRCALRCTRRFTFENGGGSATRLTAGGLKKSALRQIPVAVYGSESGKGIRE 120
           ICALGLNSIVRCALRCTRRFTFENGGGSATRLTAGGLKKSALRQIPVAVYGSESGKGIRE
Sbjct: 61  ICALGLNSIVRCALRCTRRFTFENGGGSATRLTAGGLKKSALRQIPVAVYGSESGKGIRE 120

Query: 121 TDCPICLGDFIVGEKIKVLPKCNHEFHVRCIDTWLASHTSCPTCRQSLLEQQSNPQPAEP 180
           TDCPICLGDFIVGEKIKVLPKCNHEFHVRCIDTWL SHTSCPTCRQSLLEQQSNPQPAEP
Sbjct: 121 TDCPICLGDFIVGEKIKVLPKCNHEFHVRCIDTWLVSHTSCPTCRQSLLEQQSNPQPAEP 180

Query: 181 EVGNQPAGNSSAGGQGE-ISITVDEIS 207
           EVGNQPAGNSSAGGQ + I I +D +S
Sbjct: 181 EVGNQPAGNSSAGGQVKTIQIYLDLLS 204

[Close]

BLAST of Carg05940 vs. ExPASy TrEMBL
Match: A0A6J1HEW6 (RING-H2 finger protein ATL74-like isoform X3 OS=Cucurbita moschata OX=3662 GN=LOC111463337 PE=4 SV=1)

HSP 1 Score: 383.3 bits (983), Expect = 6.6e-103
Identity = 190/195 (97.44%), Postives = 190/195 (97.44%), Query Frame = 0


Query: 1   MASDHHPHRLHRLHRLHRLLLGVDATAPPSNGTGTKNSYSNEANFDTNMVIILAALLCAL 60
           MASDHHP   HRLHRLHRLLLGVDATAPPSNGT TKNSYSNEANFDTNMVIILAALLCAL
Sbjct: 1   MASDHHP---HRLHRLHRLLLGVDATAPPSNGTRTKNSYSNEANFDTNMVIILAALLCAL 60

Query: 61  ICALGLNSIVRCALRCTRRFTFENGGGSATRLTAGGLKKSALRQIPVAVYGSESGKGIRE 120
           ICALGLNSIVRCALRCTRRFTFENGGGSATRLTAGGLKKSALRQIPVAVYGSESGKGIRE
Sbjct: 61  ICALGLNSIVRCALRCTRRFTFENGGGSATRLTAGGLKKSALRQIPVAVYGSESGKGIRE 120

Query: 121 TDCPICLGDFIVGEKIKVLPKCNHEFHVRCIDTWLASHTSCPTCRQSLLEQQSNPQPAEP 180
           TDCPICLGDFIVGEKIKVLPKCNHEFHVRCIDTWL SHTSCPTCRQSLLEQQSNPQPAEP
Sbjct: 121 TDCPICLGDFIVGEKIKVLPKCNHEFHVRCIDTWLVSHTSCPTCRQSLLEQQSNPQPAEP 180

Query: 181 EVGNQPAGNSSAGGQ 196
           EVGNQPAGNSSAGGQ
Sbjct: 181 EVGNQPAGNSSAGGQ 192

[Close]

BLAST of Carg05940 vs. ExPASy TrEMBL
Match: A0A6J1HIP4 (RING-H2 finger protein ATL74-like isoform X2 OS=Cucurbita moschata OX=3662 GN=LOC111463337 PE=4 SV=1)

HSP 1 Score: 383.3 bits (983), Expect = 6.6e-103
Identity = 191/198 (96.46%), Postives = 191/198 (96.46%), Query Frame = 0


Query: 1   MASDHHPHRLHRLHRLHRLLLGVDATAPPSNGTGTKNSYSNEANFDTNMVIILAALLCAL 60
           MASDHHP   HRLHRLHRLLLGVDATAPPSNGT TKNSYSNEANFDTNMVIILAALLCAL
Sbjct: 1   MASDHHP---HRLHRLHRLLLGVDATAPPSNGTRTKNSYSNEANFDTNMVIILAALLCAL 60

Query: 61  ICALGLNSIVRCALRCTRRFTFENGGGSATRLTAGGLKKSALRQIPVAVYGSESGKGIRE 120
           ICALGLNSIVRCALRCTRRFTFENGGGSATRLTAGGLKKSALRQIPVAVYGSESGKGIRE
Sbjct: 61  ICALGLNSIVRCALRCTRRFTFENGGGSATRLTAGGLKKSALRQIPVAVYGSESGKGIRE 120

Query: 121 TDCPICLGDFIVGEKIKVLPKCNHEFHVRCIDTWLASHTSCPTCRQSLLEQQSNPQPAEP 180
           TDCPICLGDFIVGEKIKVLPKCNHEFHVRCIDTWL SHTSCPTCRQSLLEQQSNPQPAEP
Sbjct: 121 TDCPICLGDFIVGEKIKVLPKCNHEFHVRCIDTWLVSHTSCPTCRQSLLEQQSNPQPAEP 180

Query: 181 EVGNQPAGNSSAGGQGEI 199
           EVGNQPAGNSSAGGQ  I
Sbjct: 181 EVGNQPAGNSSAGGQVSI 195

[Close]

BLAST of Carg05940 vs. ExPASy TrEMBL
Match: A0A6J1JLN4 (RING-H2 finger protein ATL74-like isoform X2 OS=Cucurbita maxima OX=3661 GN=LOC111487001 PE=4 SV=1)

HSP 1 Score: 366.7 bits (940), Expect = 6.4e-98
Identity = 187/207 (90.34%), Postives = 191/207 (92.27%), Query Frame = 0


Query: 1   MASDHHPHRLHRLHRLHRLLLGVDATAPPSNGTGTKNSYSNEANFDTNMVIILAALLCAL 60
           MASDHHP      HRLHRLLLGVDATAP SNGT TKNSYSNEANFDTNMVIILAALLCAL
Sbjct: 1   MASDHHP------HRLHRLLLGVDATAPQSNGTRTKNSYSNEANFDTNMVIILAALLCAL 60

Query: 61  ICALGLNSIVRCALRCTRRFTFENGGGSATRLTAGGLKKSALRQIPVAVYGSESGKGIRE 120
           ICALGLNSIVRCALRCTRRFTFENGGGSATRLTA GLKKSALRQIPVAVYGSESGKGIRE
Sbjct: 61  ICALGLNSIVRCALRCTRRFTFENGGGSATRLTARGLKKSALRQIPVAVYGSESGKGIRE 120

Query: 121 TDCPICLGDFIVGEKIKVLPKCNHEFHVRCIDTWLASHTSCPTCRQSLLEQQSNPQPAEP 180
           TDCPICLGDFIVGEKIKVLPKCNHEFHVRCIDTWL SHTSCPTCRQSLLEQQ+NPQPAEP
Sbjct: 121 TDCPICLGDFIVGEKIKVLPKCNHEFHVRCIDTWLVSHTSCPTCRQSLLEQQTNPQPAEP 180

Query: 181 EVGNQPAGNSSAGGQGE-ISITVDEIS 207
           EVGN PAGNSSAGGQ + I I +D +S
Sbjct: 181 EVGNGPAGNSSAGGQVKTIQIYLDLLS 201

[Close]

BLAST of Carg05940 vs. ExPASy TrEMBL
Match: A0A6J1JNU0 (RING-H2 finger protein ATL74-like isoform X1 OS=Cucurbita maxima OX=3661 GN=LOC111487001 PE=4 SV=1)

HSP 1 Score: 365.9 bits (938), Expect = 1.1e-97
Identity = 183/195 (93.85%), Postives = 184/195 (94.36%), Query Frame = 0


Query: 1   MASDHHPHRLHRLHRLHRLLLGVDATAPPSNGTGTKNSYSNEANFDTNMVIILAALLCAL 60
           MASDHHP      HRLHRLLLGVDATAP SNGT TKNSYSNEANFDTNMVIILAALLCAL
Sbjct: 1   MASDHHP------HRLHRLLLGVDATAPQSNGTRTKNSYSNEANFDTNMVIILAALLCAL 60

Query: 61  ICALGLNSIVRCALRCTRRFTFENGGGSATRLTAGGLKKSALRQIPVAVYGSESGKGIRE 120
           ICALGLNSIVRCALRCTRRFTFENGGGSATRLTA GLKKSALRQIPVAVYGSESGKGIRE
Sbjct: 61  ICALGLNSIVRCALRCTRRFTFENGGGSATRLTARGLKKSALRQIPVAVYGSESGKGIRE 120

Query: 121 TDCPICLGDFIVGEKIKVLPKCNHEFHVRCIDTWLASHTSCPTCRQSLLEQQSNPQPAEP 180
           TDCPICLGDFIVGEKIKVLPKCNHEFHVRCIDTWL SHTSCPTCRQSLLEQQ+NPQPAEP
Sbjct: 121 TDCPICLGDFIVGEKIKVLPKCNHEFHVRCIDTWLVSHTSCPTCRQSLLEQQTNPQPAEP 180

Query: 181 EVGNQPAGNSSAGGQ 196
           EVGN PAGNSSAGGQ
Sbjct: 181 EVGNGPAGNSSAGGQ 189

[Close]

BLAST of Carg05940 vs. TAIR 10
Match: AT3G10910.1 (RING/U-box superfamily protein )

HSP 1 Score: 177.6 bits (449), Expect = 1.1e-44
Identity = 99/166 (59.64%), Postives = 114/166 (68.67%), Query Frame = 0


Query: 18  RLLLGVDATAPPSNGTGTKNSYSNEANFDTNMVIILAALLCALICALGLNSIVRCALRCT 77
           RLLL   A A P+N         N+  FDTNMVIILAALLCALICAL LNS +RC LR T
Sbjct: 3   RLLLEPQANA-PANANPKPKGGINDTYFDTNMVIILAALLCALICALSLNSALRCVLRIT 62

Query: 78  RRFTFE-------NGGGSATRLTAG-GLKKSALRQIPVAVYGSESGKGIRETDCPICLGD 137
           RRFT +       N   +  RL A  GLKK AL+QIPV +YGS     ++ T+C ICLGD
Sbjct: 63  RRFTSDDQVSNASNANANLGRLAAATGLKKQALKQIPVGLYGS-GIIDMKATECLICLGD 122

Query: 138 FIVGEKIKVLPKCNHEFHVRCIDTWLASHTSCPTCRQSLLEQQSNP 176
           F  GEK++VLPKCNH FHVRCIDTWL S +SCPTCRQSLL +Q +P
Sbjct: 123 FEDGEKVRVLPKCNHGFHVRCIDTWLLSRSSCPTCRQSLLLEQPSP 166

[Close]

BLAST of Carg05940 vs. TAIR 10
Match: AT5G05280.1 (RING/U-box superfamily protein )

HSP 1 Score: 174.1 bits (440), Expect = 1.2e-43
Identity = 92/164 (56.10%), Postives = 110/164 (67.07%), Query Frame = 0


Query: 18  RLLLGVDATA--------PPSNGTGTKNSYSNEANFDTNMVIILAALLCALICALGLNSI 77
           R LL   AT         P + G    N+  N A+ DT+MVIILAALLCALICALG+NS+
Sbjct: 3   RFLLATQATPTISATDANPRTLGDSVSNN-KNIASMDTHMVIILAALLCALICALGINSV 62

Query: 78  VRCALRCTRRFTFENGGGSATRLTAGGLKKSALRQIPVAVYGSESGKGIRETDCPICLGD 137
           +RC LRCTRRFT            A G+KK AL+ IPV  Y  E    ++ T+C ICLGD
Sbjct: 63  LRCVLRCTRRFTPNEDPVDTNANVAKGIKKRALKVIPVDSYSPE--LKMKATECLICLGD 122

Query: 138 FIVGEKIKVLPKCNHEFHVRCIDTWLASHTSCPTCRQSLLEQQS 174
           F+ GE ++VLPKCNH FHV+CIDTWL SH+SCPTCRQSLLE Q+
Sbjct: 123 FVEGETVRVLPKCNHGFHVKCIDTWLLSHSSCPTCRQSLLEHQT 163

[Close]

BLAST of Carg05940 vs. TAIR 10
Match: AT5G01880.1 (RING/U-box superfamily protein )

HSP 1 Score: 170.6 bits (431), Expect = 1.3e-42
Identity = 85/155 (54.84%), Postives = 106/155 (68.39%), Query Frame = 0


Query: 16  LHRLLLGVDATAPPSNGTGTKNSYSNEANFDTNMVIILAALLCALICALGLNSIVRCALR 75
           +HRLLL        ++G+G  + Y+ + NFD NMVIILAALLCALI ALGLNSI+RCA+R
Sbjct: 1   MHRLLLESHGGGNETSGSGGGDGYTRDMNFDANMVIILAALLCALILALGLNSILRCAMR 60

Query: 76  CTRRFTFENGGGSATRLTAGGLKKSALRQIPVAVYGSESGKGIRETDCPICLGDFIVGEK 135
           C   F   +   + T     GLKK  L++ PVA YGS   K I  T+C ICLG+F  GE+
Sbjct: 61  C--GFGLSSSAAAGTVADRAGLKKRELKKFPVAEYGSGEVK-IAATECAICLGEFADGER 120

Query: 136 IKVLPKCNHEFHVRCIDTWLASHTSCPTCRQSLLE 171
           ++VLP CNH FH+ CIDTWL SH+SCP CR SL+E
Sbjct: 121 VRVLPPCNHSFHMSCIDTWLVSHSSCPNCRHSLIE 152

[Close]

BLAST of Carg05940 vs. TAIR 10
Match: AT1G49230.1 (RING/U-box superfamily protein )

HSP 1 Score: 149.4 bits (376), Expect = 3.1e-36
Identity = 68/139 (48.92%), Postives = 95/139 (68.35%), Query Frame = 0


Query: 33  TGTKNSYSNEANFDTNMVIILAALLCALICALGLNSIVRCALRCTRRFTFENGGGS-ATR 92
           T   + Y  + NFD N+V++L+ LLCAL+C+LGLNSI+RCALRC+     E GG +   R
Sbjct: 40  TPAPSPYVGDNNFDANVVMVLSVLLCALVCSLGLNSIIRCALRCSNLVPSEAGGDNYPVR 99

Query: 93  LTAGGLKKSALRQIPVAVYGSESGKGIRETDCPICLGDFIVGEKIKVLPKCNHEFHVRCI 152
           LT  G+K+ AL+      Y +E      +T+C ICL +F+  E++K+LP C+H FHVRCI
Sbjct: 100 LTNTGVKRKALKSFQTVSYSTELNLPGLDTECAICLSEFVAEERVKLLPTCHHGFHVRCI 159

Query: 153 DTWLASHTSCPTCRQSLLE 171
           D WL+SH+SCPTCR  L++
Sbjct: 160 DKWLSSHSSCPTCRHCLIQ 178

[Close]

BLAST of Carg05940 vs. TAIR 10
Match: AT1G49220.1 (RING/U-box superfamily protein )

HSP 1 Score: 128.3 bits (321), Expect = 7.3e-30
Identity = 62/134 (46.27%), Postives = 87/134 (64.93%), Query Frame = 0


Query: 40  SNEANFDTNMVIILAALLCALICALGLNSIVRCALRCTRRFTFEN--GGGSATRLTAG-G 99
           ++E N   N++++L+ L+C +IC LGL+ I+RCALR + RF         S+TR ++  G
Sbjct: 49  THENNLSGNVMMLLSILICGIICCLGLHYIIRCALRRSTRFMISEPVPSLSSTRGSSNKG 108

Query: 100 LKKSALRQIPVAVYGSESGKGIRETDCPICLGDFIVGEKIKVLPKCNHEFHVRCIDTWLA 159
           +KK ALR  PV  Y  E      + +C ICL DF+ GE++++LPKCNH FHVRCID WL 
Sbjct: 109 IKKKALRMFPVVSYSPEMNLPGLDEECVICLSDFVSGEQLRLLPKCNHGFHVRCIDKWLQ 168

Query: 160 SHTSCPTCRQSLLE 171
            H +CP CR  L+E
Sbjct: 169 QHLTCPKCRNCLVE 182

The following BLAST results are available for this feature:

BLAST of Carg05940 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG7033263.1	2.9e-113	100.00	RING-H2 finger protein ATL72, partial [Cucurbita argyrosperma subsp. argyrosperm...	[more]
XP_023529302.1	1.6e-103	93.72	RING-H2 finger protein ATL73-like isoform X2 [Cucurbita pepo subsp. pepo]	[more]
XP_023529310.1	2.1e-103	96.46	RING-H2 finger protein ATL74-like isoform X3 [Cucurbita pepo subsp. pepo]	[more]
XP_023529295.1	2.7e-103	97.44	RING-H2 finger protein ATL74-like isoform X1 [Cucurbita pepo subsp. pepo]	[more]
XP_022963000.1	1.0e-102	93.72	RING-H2 finger protein ATL74-like isoform X1 [Cucurbita moschata]	[more]

BLAST of Carg05940 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9SG96	1.5e-43	59.64	RING-H2 finger protein ATL72 OS=Arabidopsis thaliana OX=3702 GN=ATL72 PE=2 SV=1	[more]
Q9FLC6	1.6e-42	56.10	RING-H2 finger protein ATL73 OS=Arabidopsis thaliana OX=3702 GN=ATL73 PE=2 SV=1	[more]
Q9LZV8	1.8e-41	54.84	RING-H2 finger protein ATL74 OS=Arabidopsis thaliana OX=3702 GN=ATL74 PE=2 SV=1	[more]
Q6NQG7	4.3e-35	48.92	RING-H2 finger protein ATL78 OS=Arabidopsis thaliana OX=3702 GN=ATL78 PE=2 SV=1	[more]
P0C034	1.0e-28	46.27	RING-H2 finger protein ATL10 OS=Arabidopsis thaliana OX=3702 GN=ATL10 PE=2 SV=1	[more]

BLAST of Carg05940 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1HGR5	5.0e-103	93.72	RING-H2 finger protein ATL74-like isoform X1 OS=Cucurbita moschata OX=3662 GN=LO...	[more]
A0A6J1HEW6	6.6e-103	97.44	RING-H2 finger protein ATL74-like isoform X3 OS=Cucurbita moschata OX=3662 GN=LO...	[more]
A0A6J1HIP4	6.6e-103	96.46	RING-H2 finger protein ATL74-like isoform X2 OS=Cucurbita moschata OX=3662 GN=LO...	[more]
A0A6J1JLN4	6.4e-98	90.34	RING-H2 finger protein ATL74-like isoform X2 OS=Cucurbita maxima OX=3661 GN=LOC1...	[more]
A0A6J1JNU0	1.1e-97	93.85	RING-H2 finger protein ATL74-like isoform X1 OS=Cucurbita maxima OX=3661 GN=LOC1...	[more]

BLAST of Carg05940 vs. TAIR 10


Match Name	E-value	Identity	Description
AT3G10910.1	1.1e-44	59.64	RING/U-box superfamily protein	[more]
AT5G05280.1	1.2e-43	56.10	RING/U-box superfamily protein	[more]
AT5G01880.1	1.3e-42	54.84	RING/U-box superfamily protein	[more]
AT1G49230.1	3.1e-36	48.92	RING/U-box superfamily protein	[more]
AT1G49220.1	7.3e-30	46.27	RING/U-box superfamily protein	[more]

InterPro

Analysis Name: InterPro Annotations of Silver-seed gourd (SMH-JMG-627) v2
Date Performed: 2021-10-25

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001841	Zinc finger, RING-type	SMART	SM00184	ring_2	coord: 123..164 e-value: 2.0E-7 score: 40.6
IPR001841	Zinc finger, RING-type	PFAM	PF13639	zf-RING_2	coord: 122..165 e-value: 1.1E-12 score: 48.1
IPR001841	Zinc finger, RING-type	PROSITE	PS50089	ZF_RING_2	coord: 123..165 score: 12.1057
IPR013083	Zinc finger, RING/FYVE/PHD-type	GENE3D	3.30.40.10	Zinc/RING finger domain, C3HC4 (zinc finger)	coord: 87..170 e-value: 2.2E-22 score: 80.5
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 172..206
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 172..197
None	No IPR available	PANTHER	PTHR45798	RING-H2 FINGER PROTEIN ATL61-RELATED-RELATED	coord: 17..198
None	No IPR available	PANTHER	PTHR45798:SF44	RING-H2 FINGER PROTEIN ATL74	coord: 17..198
None	No IPR available	CDD	cd16486	mRING-H2-C3H2C2D_ZSWM2	coord: 123..165 e-value: 3.15693E-17 score: 70.3333
None	No IPR available	SUPERFAMILY	57850	RING/U-box	coord: 118..176

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Carg05940-RA	Carg05940-RA	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0016021	integral component of membrane