Carg05937 (gene) Silver-seed gourd (SMH-JMG-627) v2

Overview


Name	Carg05937
Type	gene
Organism	Cucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
Description	transcription elongation factor TFIIS-like
Location	Carg_Chr04: 21217471 .. 21219348 (-)
RNA-Seq Expression	Carg05937
Synteny	Carg05937

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

TTATACCTCATCTCCTAGGCCTCGTTTCAATTTCTTTACTCTCTCCGCCGTCTCTCTGCCGAAAAAGGGATTTTTCCAAAGCCGATCCCGATTTATTTTCCGTTGTTGTTTTTGATTTCTTCTATTAAGTGTGGTATTGCGAGCGTTTTTGCAGTCGGCGATTCAGATCTCTGTAAGTGTTACTTATTCGAAATCGATCAATTGCCATCGGCAATGCGTTTTCTTTTGATTTGATTGTATCTTTTTGCTTGTTCATTGAGAAAAGAACTCGAATTCGATATTGATTCCAATACCCCCTGCATGCGTCGTTTTTCTCATTCCGTTGTGTTGTTGGGATCTTATCGTTCTTGGAATGTGGTCGTTAGGTTCCATCAAAATTCTTCGTTGGCGGTGATTCGATGGAGAAAGAGCTGGTCGAATTGTTTGAAGCGGCGAAGAAGGCTGCAGACGCCGCTGCAGCACGATCAAATGATGGGGGAGCCGAGGAAAGTCGTTGTCTTGATGCCCTACGGCAGCTCAAGAAATTTCCTGTTACATATCAAATCCTTGTTTCCACTCAGGTTTTCTTCTCACTATACTTGAAATCTGTTTCTTTTGTTGATGGTGGATGGATACTCAAAATGTAAACAGCCGGTTAGTTTATAAAATCGTACATGGTTTTTGATATGGACTAAGCCTAAATTCCTTGTTTGATCGTCAACGAATTGGTTTCATAACGAGCTGCGTTACTCTGTTTCATCTGTTATTTACGTTGTTCATAACGGAATCAACTCATTGCAAGTTTTTGGAACAATAATACTGGAGTCATAGCTCTTGTTATATATTGTTTTCTGGATTTTTTTTTTTCAATCCCTTTTCCTTTGTAATTGAGGTCCATTTTCATGCGTTGCTCAAGATTCTATATCTTGCCTTCCATAGGTTGGGAAGCGCCTTCGGCACCTCACCAAACACCCCAAGAAGAAAATACAAGACTATGCTTCTGACTTGATTGAGATGTGGAAGGATATAGTAATCAAGGAGACTAACAAGAATAAAAAGAATGGAAACGGCGACAGTAAAGAACCATCCAAAATTGGTTCTCCCAGTGCAGAGTCCGTTAAGGTGGAGAACTTGCAAAAATCATCTTCCATGAAGGCTGAGAGAGTTTCCAAGGTTGAGCAATTCGATAGGAATGGTTCCACAAGCTCTGTTAAATTTTCCAGATCGGCGAGTGCGGTCTCGGAGAAGAACTCTGTTAAGGTTGAAAAAACTGATTCAGTGGTCAAGGTGGAAAGGATAGTTAAAGAAGAGAAGAAAATCTCTATTGAAAAGAAACCAAGCGGAGCCGCTGGACCTCCAAAGCTTACTTCCATGATCAAATCAAAAGATGCTGCTCGGGACAAAATAAGAGAACTTCTCGTTGAGGCCTTCTCCAAGGTTCCTGGTGAGGCTGATGAAGATGTTATGGATGAAGTAAATGCAAGCGATCCTATCCGTGTTGCTGTTTCTGTAGAATCCGTGATGTTTGAAAATTGGGGAGGTTCTACTGGGGCACAGAAGGCCAAGTACAGATCTATAATGTTTAACCTCAAGGATCCAAAGAACCCAGATTTTCGGAGAAAAGTTCTTCTTGGGCTTATCAAGCCAGAAAGGATGACCAACTTGAGCACAACTGATATGGCAAGTGATCAGAGAAAACGTGAAAACGAAGAGATTGCACAAAAAGCACTATTCGAATGTGAGCGAGGAGGAGCTCCAAAAGCTACCACCGATCAATTCAAATGTGGTCGATGCGGTCAACGCAAGACGACCTACTATCAATTGCAGACCCGGAGTGCTGATGAACCTATGACAACGTTTGTAACTTGTGTAAACTGCAATAATCATTGGAAGTTCTGT

mRNA sequence

TTATACCTCATCTCCTAGGCCTCGTTTCAATTTCTTTACTCTCTCCGCCGTCTCTCTGCCGAAAAAGGGATTTTTCCAAAGCCGATCCCGATTTATTTTCCGTTGTTGTTTTTGATTTCTTCTATTAAGTGTGGTATTGCGAGCGTTTTTGCAGTCGGCGATTCAGATCTCTGTTCCATCAAAATTCTTCGTTGGCGGTGATTCGATGGAGAAAGAGCTGGTCGAATTGTTTGAAGCGGCGAAGAAGGCTGCAGACGCCGCTGCAGCACGATCAAATGATGGGGGAGCCGAGGAAAGTCGTTGTCTTGATGCCCTACGGCAGCTCAAGAAATTTCCTGTTACATATCAAATCCTTGTTTCCACTCAGGTTGGGAAGCGCCTTCGGCACCTCACCAAACACCCCAAGAAGAAAATACAAGACTATGCTTCTGACTTGATTGAGATGTGGAAGGATATAGTAATCAAGGAGACTAACAAGAATAAAAAGAATGGAAACGGCGACAGTAAAGAACCATCCAAAATTGGTTCTCCCAGTGCAGAGTCCGTTAAGGTGGAGAACTTGCAAAAATCATCTTCCATGAAGGCTGAGAGAGTTTCCAAGGTTGAGCAATTCGATAGGAATGGTTCCACAAGCTCTGTTAAATTTTCCAGATCGGCGAGTGCGGTCTCGGAGAAGAACTCTGTTAAGGTTGAAAAAACTGATTCAGTGGTCAAGGTGGAAAGGATAGTTAAAGAAGAGAAGAAAATCTCTATTGAAAAGAAACCAAGCGGAGCCGCTGGACCTCCAAAGCTTACTTCCATGATCAAATCAAAAGATGCTGCTCGGGACAAAATAAGAGAACTTCTCGTTGAGGCCTTCTCCAAGGTTCCTGGTGAGGCTGATGAAGATGTTATGGATGAAGTAAATGCAAGCGATCCTATCCGTGTTGCTGTTTCTGTAGAATCCGTGATGTTTGAAAATTGGGGAGGTTCTACTGGGGCACAGAAGGCCAAGTACAGATCTATAATGTTTAACCTCAAGGATCCAAAGAACCCAGATTTTCGGAGAAAAGTTCTTCTTGGGCTTATCAAGCCAGAAAGGATGACCAACTTGAGCACAACTGATATGGCAAGTGATCAGAGAAAACGTGAAAACGAAGAGATTGCACAAAAAGCACTATTCGAATGTGAGCGAGGAGGAGCTCCAAAAGCTACCACCGATCAATTCAAATGTGGTCGATGCGGTCAACGCAAGACGACCTACTATCAATTGCAGACCCGGAGTGCTGATGAACCTATGACAACGTTTGTAACTTGTGTAAACTGCAATAATCATTGGAAGTTCTGT

Coding sequence (CDS)

ATGGAGAAAGAGCTGGTCGAATTGTTTGAAGCGGCGAAGAAGGCTGCAGACGCCGCTGCAGCACGATCAAATGATGGGGGAGCCGAGGAAAGTCGTTGTCTTGATGCCCTACGGCAGCTCAAGAAATTTCCTGTTACATATCAAATCCTTGTTTCCACTCAGGTTGGGAAGCGCCTTCGGCACCTCACCAAACACCCCAAGAAGAAAATACAAGACTATGCTTCTGACTTGATTGAGATGTGGAAGGATATAGTAATCAAGGAGACTAACAAGAATAAAAAGAATGGAAACGGCGACAGTAAAGAACCATCCAAAATTGGTTCTCCCAGTGCAGAGTCCGTTAAGGTGGAGAACTTGCAAAAATCATCTTCCATGAAGGCTGAGAGAGTTTCCAAGGTTGAGCAATTCGATAGGAATGGTTCCACAAGCTCTGTTAAATTTTCCAGATCGGCGAGTGCGGTCTCGGAGAAGAACTCTGTTAAGGTTGAAAAAACTGATTCAGTGGTCAAGGTGGAAAGGATAGTTAAAGAAGAGAAGAAAATCTCTATTGAAAAGAAACCAAGCGGAGCCGCTGGACCTCCAAAGCTTACTTCCATGATCAAATCAAAAGATGCTGCTCGGGACAAAATAAGAGAACTTCTCGTTGAGGCCTTCTCCAAGGTTCCTGGTGAGGCTGATGAAGATGTTATGGATGAAGTAAATGCAAGCGATCCTATCCGTGTTGCTGTTTCTGTAGAATCCGTGATGTTTGAAAATTGGGGAGGTTCTACTGGGGCACAGAAGGCCAAGTACAGATCTATAATGTTTAACCTCAAGGATCCAAAGAACCCAGATTTTCGGAGAAAAGTTCTTCTTGGGCTTATCAAGCCAGAAAGGATGACCAACTTGAGCACAACTGATATGGCAAGTGATCAGAGAAAACGTGAAAACGAAGAGATTGCACAAAAAGCACTATTCGAATGTGAGCGAGGAGGAGCTCCAAAAGCTACCACCGATCAATTCAAATGTGGTCGATGCGGTCAACGCAAGACGACCTACTATCAATTGCAGACCCGGAGTGCTGATGAACCTATGACAACGTTTGTAACTTGTGTAAACTGCAATAATCATTGGAAGTTCTGT

Protein sequence

MEKELVELFEAAKKAADAAAARSNDGGAEESRCLDALRQLKKFPVTYQILVSTQVGKRLRHLTKHPKKKIQDYASDLIEMWKDIVIKETNKNKKNGNGDSKEPSKIGSPSAESVKVENLQKSSSMKAERVSKVEQFDRNGSTSSVKFSRSASAVSEKNSVKVEKTDSVVKVERIVKEEKKISIEKKPSGAAGPPKLTSMIKSKDAARDKIRELLVEAFSKVPGEADEDVMDEVNASDPIRVAVSVESVMFENWGGSTGAQKAKYRSIMFNLKDPKNPDFRRKVLLGLIKPERMTNLSTTDMASDQRKRENEEIAQKALFECERGGAPKATTDQFKCGRCGQRKTTYYQLQTRSADEPMTTFVTCVNCNNHWKFC

Homology

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BLAST of Carg05937 vs. NCBI nr
Match: KAG7033260.1 (Transcription elongation factor TFIIS, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 710.7 bits (1833), Expect = 6.7e-201
Identity = 374/374 (100.00%), Postives = 374/374 (100.00%), Query Frame = 0


Query: 1   MEKELVELFEAAKKAADAAAARSNDGGAEESRCLDALRQLKKFPVTYQILVSTQVGKRLR 60
           MEKELVELFEAAKKAADAAAARSNDGGAEESRCLDALRQLKKFPVTYQILVSTQVGKRLR
Sbjct: 1   MEKELVELFEAAKKAADAAAARSNDGGAEESRCLDALRQLKKFPVTYQILVSTQVGKRLR 60

Query: 61  HLTKHPKKKIQDYASDLIEMWKDIVIKETNKNKKNGNGDSKEPSKIGSPSAESVKVENLQ 120
           HLTKHPKKKIQDYASDLIEMWKDIVIKETNKNKKNGNGDSKEPSKIGSPSAESVKVENLQ
Sbjct: 61  HLTKHPKKKIQDYASDLIEMWKDIVIKETNKNKKNGNGDSKEPSKIGSPSAESVKVENLQ 120

Query: 121 KSSSMKAERVSKVEQFDRNGSTSSVKFSRSASAVSEKNSVKVEKTDSVVKVERIVKEEKK 180
           KSSSMKAERVSKVEQFDRNGSTSSVKFSRSASAVSEKNSVKVEKTDSVVKVERIVKEEKK
Sbjct: 121 KSSSMKAERVSKVEQFDRNGSTSSVKFSRSASAVSEKNSVKVEKTDSVVKVERIVKEEKK 180

Query: 181 ISIEKKPSGAAGPPKLTSMIKSKDAARDKIRELLVEAFSKVPGEADEDVMDEVNASDPIR 240
           ISIEKKPSGAAGPPKLTSMIKSKDAARDKIRELLVEAFSKVPGEADEDVMDEVNASDPIR
Sbjct: 181 ISIEKKPSGAAGPPKLTSMIKSKDAARDKIRELLVEAFSKVPGEADEDVMDEVNASDPIR 240

Query: 241 VAVSVESVMFENWGGSTGAQKAKYRSIMFNLKDPKNPDFRRKVLLGLIKPERMTNLSTTD 300
           VAVSVESVMFENWGGSTGAQKAKYRSIMFNLKDPKNPDFRRKVLLGLIKPERMTNLSTTD
Sbjct: 241 VAVSVESVMFENWGGSTGAQKAKYRSIMFNLKDPKNPDFRRKVLLGLIKPERMTNLSTTD 300

Query: 301 MASDQRKRENEEIAQKALFECERGGAPKATTDQFKCGRCGQRKTTYYQLQTRSADEPMTT 360
           MASDQRKRENEEIAQKALFECERGGAPKATTDQFKCGRCGQRKTTYYQLQTRSADEPMTT
Sbjct: 301 MASDQRKRENEEIAQKALFECERGGAPKATTDQFKCGRCGQRKTTYYQLQTRSADEPMTT 360

Query: 361 FVTCVNCNNHWKFC 375
           FVTCVNCNNHWKFC
Sbjct: 361 FVTCVNCNNHWKFC 374

[Close]

BLAST of Carg05937 vs. NCBI nr
Match: KAG6602582.1 (Transcription elongation factor TFIIS, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 706.1 bits (1821), Expect = 1.7e-199
Identity = 371/374 (99.20%), Postives = 373/374 (99.73%), Query Frame = 0


Query: 1   MEKELVELFEAAKKAADAAAARSNDGGAEESRCLDALRQLKKFPVTYQILVSTQVGKRLR 60
           MEKELVELFEAAKKAADAAAARSNDGGAEESRCLDALRQLKKFPVTYQILVSTQVGKRLR
Sbjct: 300 MEKELVELFEAAKKAADAAAARSNDGGAEESRCLDALRQLKKFPVTYQILVSTQVGKRLR 359

Query: 61  HLTKHPKKKIQDYASDLIEMWKDIVIKETNKNKKNGNGDSKEPSKIGSPSAESVKVENLQ 120
           HLTKHPKKKIQDYASDLIEMWKDIVIKETNKNKKNGNG+SKEPSKIGSPSAESVKVENLQ
Sbjct: 360 HLTKHPKKKIQDYASDLIEMWKDIVIKETNKNKKNGNGNSKEPSKIGSPSAESVKVENLQ 419

Query: 121 KSSSMKAERVSKVEQFDRNGSTSSVKFSRSASAVSEKNSVKVEKTDSVVKVERIVKEEKK 180
           KSSSMK ERVSKVEQFDRNGSTSSVKFSRSASAVSEKNSVKVEKTDSVVKVERIVKEEKK
Sbjct: 420 KSSSMKVERVSKVEQFDRNGSTSSVKFSRSASAVSEKNSVKVEKTDSVVKVERIVKEEKK 479

Query: 181 ISIEKKPSGAAGPPKLTSMIKSKDAARDKIRELLVEAFSKVPGEADEDVMDEVNASDPIR 240
           ISIEKKPSGAAGPPKLT+MIKSKDAARDKIRELLVEAFSKVPGEADEDVMDEVNASDPIR
Sbjct: 480 ISIEKKPSGAAGPPKLTAMIKSKDAARDKIRELLVEAFSKVPGEADEDVMDEVNASDPIR 539

Query: 241 VAVSVESVMFENWGGSTGAQKAKYRSIMFNLKDPKNPDFRRKVLLGLIKPERMTNLSTTD 300
           VAVSVESVMFENWGGSTGAQKAKYRSIMFNLKDPKNPDFRRKVLLGLIKPERMTNLSTTD
Sbjct: 540 VAVSVESVMFENWGGSTGAQKAKYRSIMFNLKDPKNPDFRRKVLLGLIKPERMTNLSTTD 599

Query: 301 MASDQRKRENEEIAQKALFECERGGAPKATTDQFKCGRCGQRKTTYYQLQTRSADEPMTT 360
           MASDQRKRENEEIAQKALFECERGGAPKATTDQFKCGRCGQRKTTYYQLQTRSADEPMTT
Sbjct: 600 MASDQRKRENEEIAQKALFECERGGAPKATTDQFKCGRCGQRKTTYYQLQTRSADEPMTT 659

Query: 361 FVTCVNCNNHWKFC 375
           FVTCVNCNNHWKFC
Sbjct: 660 FVTCVNCNNHWKFC 673

[Close]

BLAST of Carg05937 vs. NCBI nr
Match: XP_022957122.1 (transcription elongation factor TFIIS-like [Cucurbita moschata])

HSP 1 Score: 704.5 bits (1817), Expect = 4.8e-199
Identity = 370/374 (98.93%), Postives = 373/374 (99.73%), Query Frame = 0


Query: 1   MEKELVELFEAAKKAADAAAARSNDGGAEESRCLDALRQLKKFPVTYQILVSTQVGKRLR 60
           MEKELVELFEAAKKAADAAAARSNDGGAEESRCLDALRQLKKFPVTYQILVSTQVGKRLR
Sbjct: 1   MEKELVELFEAAKKAADAAAARSNDGGAEESRCLDALRQLKKFPVTYQILVSTQVGKRLR 60

Query: 61  HLTKHPKKKIQDYASDLIEMWKDIVIKETNKNKKNGNGDSKEPSKIGSPSAESVKVENLQ 120
           HLTKHPKKKIQDYASDLIEMWKDIVIKETNKNKKNGNG+SKEPSKIGSPSAESVKVENLQ
Sbjct: 61  HLTKHPKKKIQDYASDLIEMWKDIVIKETNKNKKNGNGNSKEPSKIGSPSAESVKVENLQ 120

Query: 121 KSSSMKAERVSKVEQFDRNGSTSSVKFSRSASAVSEKNSVKVEKTDSVVKVERIVKEEKK 180
           KSSSMK ERVSKVEQFDRNGSTSSVKFSRSASAVSEKNSVKVEKTDSVVKVER+VKEEKK
Sbjct: 121 KSSSMKVERVSKVEQFDRNGSTSSVKFSRSASAVSEKNSVKVEKTDSVVKVERMVKEEKK 180

Query: 181 ISIEKKPSGAAGPPKLTSMIKSKDAARDKIRELLVEAFSKVPGEADEDVMDEVNASDPIR 240
           ISIEKKPSGAAGPPKLTSMIKSKDAARDKIRELLVEAFSKVPGEADEDV+DEVNASDPIR
Sbjct: 181 ISIEKKPSGAAGPPKLTSMIKSKDAARDKIRELLVEAFSKVPGEADEDVIDEVNASDPIR 240

Query: 241 VAVSVESVMFENWGGSTGAQKAKYRSIMFNLKDPKNPDFRRKVLLGLIKPERMTNLSTTD 300
           VAVSVESVMFENWGGSTGAQKAKYRSIMFNLKDPKNPDFRRKVLLGLIKPERMTNLSTTD
Sbjct: 241 VAVSVESVMFENWGGSTGAQKAKYRSIMFNLKDPKNPDFRRKVLLGLIKPERMTNLSTTD 300

Query: 301 MASDQRKRENEEIAQKALFECERGGAPKATTDQFKCGRCGQRKTTYYQLQTRSADEPMTT 360
           MASDQRKRENEEIAQKALFECERGGAPKATTDQFKCGRCGQRKTTYYQLQTRSADEPMTT
Sbjct: 301 MASDQRKRENEEIAQKALFECERGGAPKATTDQFKCGRCGQRKTTYYQLQTRSADEPMTT 360

Query: 361 FVTCVNCNNHWKFC 375
           FVTCVNCNNHWKFC
Sbjct: 361 FVTCVNCNNHWKFC 374

[Close]

BLAST of Carg05937 vs. NCBI nr
Match: XP_023531955.1 (transcription elongation factor TFIIS-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 699.1 bits (1803), Expect = 2.0e-197
Identity = 368/374 (98.40%), Postives = 371/374 (99.20%), Query Frame = 0


Query: 1   MEKELVELFEAAKKAADAAAARSNDGGAEESRCLDALRQLKKFPVTYQILVSTQVGKRLR 60
           MEKELVELFEAAKKAADAAAA SNDGGAEESRCLDALRQLKKFPVTYQILVSTQVGKRLR
Sbjct: 1   MEKELVELFEAAKKAADAAAAPSNDGGAEESRCLDALRQLKKFPVTYQILVSTQVGKRLR 60

Query: 61  HLTKHPKKKIQDYASDLIEMWKDIVIKETNKNKKNGNGDSKEPSKIGSPSAESVKVENLQ 120
           HLTKHPKKKIQDYASDLIEMWKDIVIKETNKNKKNGNG+SKE SKIGSPSAESVKVENLQ
Sbjct: 61  HLTKHPKKKIQDYASDLIEMWKDIVIKETNKNKKNGNGNSKETSKIGSPSAESVKVENLQ 120

Query: 121 KSSSMKAERVSKVEQFDRNGSTSSVKFSRSASAVSEKNSVKVEKTDSVVKVERIVKEEKK 180
           KSSSMK ERVSKVEQFDRNGSTSSVK+SRSASAVSEKNSVKVEKTDSVVKVER+VKEEKK
Sbjct: 121 KSSSMKVERVSKVEQFDRNGSTSSVKYSRSASAVSEKNSVKVEKTDSVVKVERMVKEEKK 180

Query: 181 ISIEKKPSGAAGPPKLTSMIKSKDAARDKIRELLVEAFSKVPGEADEDVMDEVNASDPIR 240
           ISIEKKPSGAAGPPKLTSMIKSKDAARDKIRELLVEAFSKVPGEADEDVMDEVNASDPIR
Sbjct: 181 ISIEKKPSGAAGPPKLTSMIKSKDAARDKIRELLVEAFSKVPGEADEDVMDEVNASDPIR 240

Query: 241 VAVSVESVMFENWGGSTGAQKAKYRSIMFNLKDPKNPDFRRKVLLGLIKPERMTNLSTTD 300
           VAVSVESVMFENWGGSTGAQKAKYRSIMFNLKDPKNPDFRRKVLLGLIKPERMTNLSTTD
Sbjct: 241 VAVSVESVMFENWGGSTGAQKAKYRSIMFNLKDPKNPDFRRKVLLGLIKPERMTNLSTTD 300

Query: 301 MASDQRKRENEEIAQKALFECERGGAPKATTDQFKCGRCGQRKTTYYQLQTRSADEPMTT 360
           MASDQRKRENEEIAQKALFECERGGAPKATTDQFKCGRCGQRKTTYYQLQTRSADEPMTT
Sbjct: 301 MASDQRKRENEEIAQKALFECERGGAPKATTDQFKCGRCGQRKTTYYQLQTRSADEPMTT 360

Query: 361 FVTCVNCNNHWKFC 375
           FVTCVNCNNHWKFC
Sbjct: 361 FVTCVNCNNHWKFC 374

[Close]

BLAST of Carg05937 vs. NCBI nr
Match: XP_022989946.1 (transcription elongation factor TFIIS-like [Cucurbita maxima])

HSP 1 Score: 694.9 bits (1792), Expect = 3.8e-196
Identity = 366/374 (97.86%), Postives = 370/374 (98.93%), Query Frame = 0


Query: 1   MEKELVELFEAAKKAADAAAARSNDGGAEESRCLDALRQLKKFPVTYQILVSTQVGKRLR 60
           MEKELVELFEAAKKAADAAAA SNDGGAEESRCLDALRQLKKFPVTYQILVSTQVGKRLR
Sbjct: 1   MEKELVELFEAAKKAADAAAAPSNDGGAEESRCLDALRQLKKFPVTYQILVSTQVGKRLR 60

Query: 61  HLTKHPKKKIQDYASDLIEMWKDIVIKETNKNKKNGNGDSKEPSKIGSPSAESVKVENLQ 120
           HLTKHPKKKIQDYASDLIEMWKDIVIKETNKNKKNGNG+SKEPSKIGSPSAESVKVEN Q
Sbjct: 61  HLTKHPKKKIQDYASDLIEMWKDIVIKETNKNKKNGNGNSKEPSKIGSPSAESVKVENFQ 120

Query: 121 KSSSMKAERVSKVEQFDRNGSTSSVKFSRSASAVSEKNSVKVEKTDSVVKVERIVKEEKK 180
           KSSSMK ERVSKVEQF+R GSTSSVKFSRSASAVSEKNSVKVEKTDSVVKVER+VKEEKK
Sbjct: 121 KSSSMKVERVSKVEQFNRIGSTSSVKFSRSASAVSEKNSVKVEKTDSVVKVERMVKEEKK 180

Query: 181 ISIEKKPSGAAGPPKLTSMIKSKDAARDKIRELLVEAFSKVPGEADEDVMDEVNASDPIR 240
           ISIEKKPSGAAGPPKLTSMIKSKDAARDKIRELLVEAFSKVPGEADEDV+DEVNASDPIR
Sbjct: 181 ISIEKKPSGAAGPPKLTSMIKSKDAARDKIRELLVEAFSKVPGEADEDVIDEVNASDPIR 240

Query: 241 VAVSVESVMFENWGGSTGAQKAKYRSIMFNLKDPKNPDFRRKVLLGLIKPERMTNLSTTD 300
           VAVSVESVMFENWGGSTGAQKAKYRSIMFNLKDPKNPDFRRKVLLGLIKPERMTNLSTTD
Sbjct: 241 VAVSVESVMFENWGGSTGAQKAKYRSIMFNLKDPKNPDFRRKVLLGLIKPERMTNLSTTD 300

Query: 301 MASDQRKRENEEIAQKALFECERGGAPKATTDQFKCGRCGQRKTTYYQLQTRSADEPMTT 360
           MASDQRKRENEEIAQKALFECERGGAPKATTDQFKCGRCGQRKTTYYQLQTRSADEPMTT
Sbjct: 301 MASDQRKRENEEIAQKALFECERGGAPKATTDQFKCGRCGQRKTTYYQLQTRSADEPMTT 360

Query: 361 FVTCVNCNNHWKFC 375
           FVTCVNCNNHWKFC
Sbjct: 361 FVTCVNCNNHWKFC 374

[Close]

BLAST of Carg05937 vs. ExPASy Swiss-Prot
Match: Q9ZVH8 (Transcription elongation factor TFIIS OS=Arabidopsis thaliana OX=3702 GN=TFIIS PE=1 SV=1)

HSP 1 Score: 383.6 bits (984), Expect = 2.5e-105
Identity = 213/381 (55.91%), Postives = 267/381 (70.08%), Query Frame = 0


Query: 1   MEKELVELFEAAKKAADAAAARS-NDGGAEESRCLDALRQLKKFPVTYQILVSTQVGKRL 60
           ME +L++LFE AKKAADAAA       G E S+C+DAL+QLKKFPVTY  LV+TQVGK+L
Sbjct: 1   MESDLIDLFEGAKKAADAAALDGVTSSGPEVSQCIDALKQLKKFPVTYDTLVATQVGKKL 60

Query: 61  RHLTKHPKKKIQDYASDLIEMWKDIVIKETNKNKKNGNGDSKEPSKIGSPSAES------ 120
           R L KHP + I+  A+DL+E+WK +VI+ET K KK    +  + +K+     E       
Sbjct: 61  RSLAKHPVEDIKSVATDLLEIWKKVVIEETAKAKKTEGTNGCKEAKVNKMDVEKPSNPAP 120

Query: 121 VKVENLQKSSSMKAERVSKVEQFDRNGSTSSVKFSRSASAVSEKNSVKVEKTDSVVKVER 180
           VKV+ LQ+  S K+ +V + E    N   + VK  R    +   N  K++     VK E+
Sbjct: 121 VKVQKLQRGDSAKSIKVERKE--PDNKVVTGVKIERKVPDIKVTNGTKIDYRGQAVKDEK 180

Query: 181 IVKEEKKISIEKKPSGAAGPPKLTSMIKSKDAARDKIRELLVEAFSKVPGEADEDVMDEV 240
           + K+ +  S++     A  PPKLT+M+K  D  RDKIRELLVEA  +V GEAD+   + V
Sbjct: 181 VSKDNQS-SMKAPAKAANAPPKLTAMLKCNDPVRDKIRELLVEALCRVAGEADDYERESV 240

Query: 241 NASDPIRVAVSVESVMFENWGGSTGAQKAKYRSIMFNLKDPKNPDFRRKVLLGLIKPERM 300
           NASDP+RVAVSVES+MFE  G STGAQK KYRSIMFNL+D  NPD RR+VL G I PE++
Sbjct: 241 NASDPLRVAVSVESLMFEKLGRSTGAQKLKYRSIMFNLRDSNNPDLRRRVLTGEISPEKL 300

Query: 301 TNLSTTDMASDQRKRENEEIAQKALFECERGGAPKATTDQFKCGRCGQRKTTYYQLQTRS 360
             LS  DMASD+RK+EN +I +KALF+CERG A KA+TDQFKCGRCGQRK TYYQ+QTRS
Sbjct: 301 ITLSAEDMASDKRKQENNQIKEKALFDCERGLAAKASTDQFKCGRCGQRKCTYYQMQTRS 360

Query: 361 ADEPMTTFVTCVNCNNHWKFC 375
           ADEPMTT+VTCVNC+NHWKFC
Sbjct: 361 ADEPMTTYVTCVNCDNHWKFC 378

[Close]

BLAST of Carg05937 vs. ExPASy Swiss-Prot
Match: P20232 (Transcription elongation factor S-II OS=Drosophila melanogaster OX=7227 GN=TfIIS PE=2 SV=1)

HSP 1 Score: 127.5 bits (319), Expect = 3.2e-28
Identity = 107/374 (28.61%), Postives = 160/374 (42.78%), Query Frame = 0


Query: 7   ELFEAAKKAADAAAARSNDGGAEESRCLDALRQLKKFPVTYQILVSTQVGKRLRHLTKHP 66
           E+F   KK +  A+      G  + + LD L+ L+   +   IL  T++G  +  L K  
Sbjct: 6   EVFRIQKKMSKMAS-----DGTGQDQALDLLKALQTLNINLDILTKTRIGMTVNELRKSS 65

Query: 67  K-KKIQDYASDLIEMWKDIVIK-----ETNKNKKNGNGDSKEPSKIGSPSAESVKVENLQ 126
           K  ++   A  LI+ WK  +         N + K G+ ++   SK  S +  S  +    
Sbjct: 66  KDDEVIALAKTLIKNWKRFLASPAPTTPNNSSAKEGSSNNSSASKSTSAAKSSSSISGKD 125

Query: 127 KSSSMKAERVSKVEQFDRNGSTSSVKFSRSASAVSEKNSVKVEKTDSVVKVERIVKEEKK 186
           KSSS      S  +  ++ GSTSS + S                                
Sbjct: 126 KSSSS-----SSSKDKEKKGSTSSSQTS-------------------------------- 185

Query: 187 ISIEKKPSGAAGPPKLTSMIKSKDAARDKIRELLVEAFSKVPGEADEDVMDEVNASDPIR 246
                 PSG              DA R K RE+L  A     GE  E         +P  
Sbjct: 186 -----FPSGG-----------MTDAVRIKCREMLATALK--IGEVPE------GCGEPEE 245

Query: 247 VAVSVESVMFENWGGSTGAQKAKYRSIMFNLKDPKNPDFRRKVLLGLIKPERMTNLSTTD 306
           +A  +E  ++  +  +    K + RS + NLKDPKNP  R   + G +  +++  ++  +
Sbjct: 246 MAAELEDAIYSEFNNTDMKYKNRIRSRVANLKDPKNPGLRGNFMCGAVTAKQLAKMTPEE 305

Query: 307 MASDQRKRENEEIAQKALFECERGGAPKATTDQFKCGRCGQRKTTYYQLQTRSADEPMTT 366
           MASD+ K+  E+  ++A+ + +        TD  KC +C +R  TY QLQTRSADEPMTT
Sbjct: 306 MASDEMKKLREKFVKEAINDAQLATVQGTKTDLLKCAKCKKRNCTYNQLQTRSADEPMTT 313

Query: 367 FVTCVNCNNHWKFC 375
           FV C  C N WKFC
Sbjct: 366 FVMCNECGNRWKFC 313

[Close]

BLAST of Carg05937 vs. ExPASy Swiss-Prot
Match: Q2KI09 (Transcription elongation factor A protein 3 OS=Bos taurus OX=9913 GN=TCEA3 PE=2 SV=1)

HSP 1 Score: 126.7 bits (317), Expect = 5.5e-28
Identity = 109/376 (28.99%), Postives = 178/376 (47.34%), Query Frame = 0


Query: 7   ELFEAAKKAADAAAARSNDGGAEESRCLDALRQLKKFPVTYQILVSTQVGKRLRHLTKH- 66
           EL   AKK     A +  +G       LD L++L  + ++ Q+L +T++G  +  + KH 
Sbjct: 6   ELLRIAKKLEKMVARKKTEG------ALDLLKKLGSWQMSIQLLQTTRIGVAVNGVRKHC 65

Query: 67  PKKKIQDYASDLIEMWKDIVIKETNKNKKNGNGDSKEPSKIGSPSAESVKVENLQKSSSM 126
             K++   A  LI  WK ++  ++    K   G+ +  +K      + +   + +  +S+
Sbjct: 66  SNKEVVALAKVLIRNWKQLL--DSPATPKGEKGEERVKAK---KKEKGLDCSDWKPETSL 125

Query: 127 KAERVSKVEQ-FDRNGSTSSVKFSRSASAVSEKNSVKVEKTDSVVKVERIVKEEKKISIE 186
              R  +VE+  DR  S  S      +SA S      +E+++S          + K    
Sbjct: 126 SPPRKKRVEEPKDRRDSVDS-----KSSATSSPKRPSMERSNS---------SKSKAETP 185

Query: 187 KKPSGAAGPP------KLTSMIKSKDAARDKIRELLVEAFSKVPGEADEDVMDEVNASDP 246
           + PS  + P        L     + D+ RDK  E+L  A      +AD+D  D     D 
Sbjct: 186 RTPSSPSSPTFAPSVCLLAPCYLTGDSVRDKCVEMLSAAL-----KADDDYKDYGVNCD- 245

Query: 247 IRVAVSVESVMFENWGGSTGAQKAKYRSIMFNLKDPKNPDFRRKVLLGLIKPERMTNLST 306
            ++A  +E  +++    +    + + RS + NLKDP+NP  RR VL G I    +  ++ 
Sbjct: 246 -KMASEIEDHIYQELKSTDMKYRNRVRSRISNLKDPRNPGLRRNVLSGAISAGLIAKMTA 305

Query: 307 TDMASDQRKRENEEIAQKALFECERGGAPKATTDQFKCGRCGQRKTTYYQLQTRSADEPM 366
            +MASD+ +     + Q+A+ E +       TTD F+C +C ++  TY Q+QTRSADEPM
Sbjct: 306 EEMASDELRELRNAMTQEAIREHQMAKTGGTTTDLFQCSKCKKKNCTYNQVQTRSADEPM 349

Query: 367 TTFVTCVNCNNHWKFC 375
           TTFV C  C N WKFC
Sbjct: 366 TTFVLCNECGNRWKFC 349

[Close]

BLAST of Carg05937 vs. ExPASy Swiss-Prot
Match: O75764 (Transcription elongation factor A protein 3 OS=Homo sapiens OX=9606 GN=TCEA3 PE=1 SV=2)

HSP 1 Score: 126.3 bits (316), Expect = 7.1e-28
Identity = 109/375 (29.07%), Postives = 178/375 (47.47%), Query Frame = 0


Query: 7   ELFEAAKKAADAAAARSNDGGAEESRCLDALRQLKKFPVTYQILVSTQVGKRLRHLTKH- 66
           EL   AKK     A ++ +G       LD L++L    ++ Q+L +T++G  +  + KH 
Sbjct: 6   ELLRIAKKLEKMVARKNTEG------ALDLLKKLHSCQMSIQLLQTTRIGVAVNGVRKHC 65

Query: 67  PKKKIQDYASDLIEMWKDIVIKETNKNKKNGNGDSKEPSKIGSPSAESVKVENLQKSSSM 126
             K++   A  LI+ WK ++  ++    K   G+ +E +K      + ++  + +  + +
Sbjct: 66  SDKEVVSLAKVLIKNWKRLL--DSPGPPKGEKGEEREKAK---KKEKGLECSDWKPEAGL 125

Query: 127 KAERVSKVEQFDRNGSTSSVKFSRSASAVSEKNSVKVEKTDSVVKVERIVKEEKKISIEK 186
              R  + +   R  S  S      +SA S      VE+++S          + K    K
Sbjct: 126 SPPRKKREDPKTRRDSVDS-----KSSASSSPKRPSVERSNS---------SKSKAESPK 185

Query: 187 KPSGAAGPPKLTSM------IKSKDAARDKIRELLVEAFSKVPGEADEDVMDEVNASDPI 246
            PS    P   +SM        + D+ RDK  E+L  A      +AD+D  D     D  
Sbjct: 186 TPSSPLTPTFASSMCLLAPCYLTGDSVRDKCVEMLSAAL-----KADDDYKDYGVNCD-- 245

Query: 247 RVAVSVESVMFENWGGSTGAQKAKYRSIMFNLKDPKNPDFRRKVLLGLIKPERMTNLSTT 306
           ++A  +E  +++    +    + + RS + NLKDP+NP  RR VL G I    +  ++  
Sbjct: 246 KMASEIEDHIYQELKSTDMKYRNRVRSRISNLKDPRNPGLRRNVLSGAISAGLIAKMTAE 305

Query: 307 DMASDQRKRENEEIAQKALFECERGGAPKATTDQFKCGRCGQRKTTYYQLQTRSADEPMT 366
           +MASD+ +     + Q+A+ E +       TTD F+C +C ++  TY Q+QTRSADEPMT
Sbjct: 306 EMASDELRELRNAMTQEAIREHQMAKTGGTTTDLFQCSKCKKKNCTYNQVQTRSADEPMT 348

Query: 367 TFVTCVNCNNHWKFC 375
           TFV C  C N WKFC
Sbjct: 366 TFVLCNECGNRWKFC 348

[Close]

BLAST of Carg05937 vs. ExPASy Swiss-Prot
Match: Q15560 (Transcription elongation factor A protein 2 OS=Homo sapiens OX=9606 GN=TCEA2 PE=1 SV=1)

HSP 1 Score: 123.6 bits (309), Expect = 4.6e-27
Identity = 104/372 (27.96%), Postives = 165/372 (44.35%), Query Frame = 0


Query: 7   ELFEAAKKAADAAAARSNDGGAEESRCLDALRQLKKFPVTYQILVSTQVGKRLRHLTKHP 66
           E+   A++       +S +G       +D LR+LK  P+T  +L ST+VG  +  L K  
Sbjct: 7   EIARIARRLDKMVTKKSAEG------AMDLLRELKAMPITLHLLQSTRVGMSVNALRKQS 66

Query: 67  K-KKIQDYASDLIEMWKDIVIKETNKNKKNGNGDSKEPSKIGSPSAESVKVENLQKSSSM 126
             +++   A  LI+ WK ++     K ++ G G     S                     
Sbjct: 67  SDEEVIALAKSLIKSWKKLLDASDAKARERGRGMPLPTS--------------------- 126

Query: 127 KAERVSKVEQFDRNGSTSSVKFSRSASAVSEKNSVKVEKTDSVVKVERIVKEEKKISIEK 186
                                 SR AS   + +                    K+  + +
Sbjct: 127 ----------------------SRDASEAPDPS-------------------RKRPELPR 186

Query: 187 KPSGAAGPPKLTS---MIKSKDAARDKIRELLVEAFSKVPGEADEDVMDEVNASDPIRVA 246
            PS     P++T+   +  + DA R+K RE+L  A      + D D +     +D  R++
Sbjct: 187 APS----TPRITTFPPVPVTCDAVRNKCREMLTAAL-----QTDHDHV--AIGADCERLS 246

Query: 247 VSVESVMFENWGGSTGAQKAKYRSIMFNLKDPKNPDFRRKVLLGLIKPERMTNLSTTDMA 306
             +E  +F + G +    K + RS + NLKD KNPD RR VL G I P+++  +++ +MA
Sbjct: 247 AQIEECIFRDVGNTDMKYKNRVRSRISNLKDAKNPDLRRNVLCGAITPQQIAVMTSEEMA 299

Query: 307 SDQRKRENEEIAQKALFECERGGAPKATTDQFKCGRCGQRKTTYYQLQTRSADEPMTTFV 366
           SD+ K   + + ++A+ E +        TD F CG+C ++  TY Q+QTRS+DEPMTTFV
Sbjct: 307 SDELKEIRKAMTKEAIREHQMARTGGTQTDLFTCGKCRKKNCTYTQVQTRSSDEPMTTFV 299

Query: 367 TCVNCNNHWKFC 375
            C  C N WKFC
Sbjct: 367 VCNECGNRWKFC 299

[Close]

BLAST of Carg05937 vs. ExPASy TrEMBL
Match: A0A6J1GYA3 (transcription elongation factor TFIIS-like OS=Cucurbita moschata OX=3662 GN=LOC111458597 PE=4 SV=1)

HSP 1 Score: 704.5 bits (1817), Expect = 2.3e-199
Identity = 370/374 (98.93%), Postives = 373/374 (99.73%), Query Frame = 0


Query: 1   MEKELVELFEAAKKAADAAAARSNDGGAEESRCLDALRQLKKFPVTYQILVSTQVGKRLR 60
           MEKELVELFEAAKKAADAAAARSNDGGAEESRCLDALRQLKKFPVTYQILVSTQVGKRLR
Sbjct: 1   MEKELVELFEAAKKAADAAAARSNDGGAEESRCLDALRQLKKFPVTYQILVSTQVGKRLR 60

Query: 61  HLTKHPKKKIQDYASDLIEMWKDIVIKETNKNKKNGNGDSKEPSKIGSPSAESVKVENLQ 120
           HLTKHPKKKIQDYASDLIEMWKDIVIKETNKNKKNGNG+SKEPSKIGSPSAESVKVENLQ
Sbjct: 61  HLTKHPKKKIQDYASDLIEMWKDIVIKETNKNKKNGNGNSKEPSKIGSPSAESVKVENLQ 120

Query: 121 KSSSMKAERVSKVEQFDRNGSTSSVKFSRSASAVSEKNSVKVEKTDSVVKVERIVKEEKK 180
           KSSSMK ERVSKVEQFDRNGSTSSVKFSRSASAVSEKNSVKVEKTDSVVKVER+VKEEKK
Sbjct: 121 KSSSMKVERVSKVEQFDRNGSTSSVKFSRSASAVSEKNSVKVEKTDSVVKVERMVKEEKK 180

Query: 181 ISIEKKPSGAAGPPKLTSMIKSKDAARDKIRELLVEAFSKVPGEADEDVMDEVNASDPIR 240
           ISIEKKPSGAAGPPKLTSMIKSKDAARDKIRELLVEAFSKVPGEADEDV+DEVNASDPIR
Sbjct: 181 ISIEKKPSGAAGPPKLTSMIKSKDAARDKIRELLVEAFSKVPGEADEDVIDEVNASDPIR 240

Query: 241 VAVSVESVMFENWGGSTGAQKAKYRSIMFNLKDPKNPDFRRKVLLGLIKPERMTNLSTTD 300
           VAVSVESVMFENWGGSTGAQKAKYRSIMFNLKDPKNPDFRRKVLLGLIKPERMTNLSTTD
Sbjct: 241 VAVSVESVMFENWGGSTGAQKAKYRSIMFNLKDPKNPDFRRKVLLGLIKPERMTNLSTTD 300

Query: 301 MASDQRKRENEEIAQKALFECERGGAPKATTDQFKCGRCGQRKTTYYQLQTRSADEPMTT 360
           MASDQRKRENEEIAQKALFECERGGAPKATTDQFKCGRCGQRKTTYYQLQTRSADEPMTT
Sbjct: 301 MASDQRKRENEEIAQKALFECERGGAPKATTDQFKCGRCGQRKTTYYQLQTRSADEPMTT 360

Query: 361 FVTCVNCNNHWKFC 375
           FVTCVNCNNHWKFC
Sbjct: 361 FVTCVNCNNHWKFC 374

[Close]

BLAST of Carg05937 vs. ExPASy TrEMBL
Match: A0A6J1JLK7 (transcription elongation factor TFIIS-like OS=Cucurbita maxima OX=3661 GN=LOC111486982 PE=4 SV=1)

HSP 1 Score: 694.9 bits (1792), Expect = 1.9e-196
Identity = 366/374 (97.86%), Postives = 370/374 (98.93%), Query Frame = 0


Query: 1   MEKELVELFEAAKKAADAAAARSNDGGAEESRCLDALRQLKKFPVTYQILVSTQVGKRLR 60
           MEKELVELFEAAKKAADAAAA SNDGGAEESRCLDALRQLKKFPVTYQILVSTQVGKRLR
Sbjct: 1   MEKELVELFEAAKKAADAAAAPSNDGGAEESRCLDALRQLKKFPVTYQILVSTQVGKRLR 60

Query: 61  HLTKHPKKKIQDYASDLIEMWKDIVIKETNKNKKNGNGDSKEPSKIGSPSAESVKVENLQ 120
           HLTKHPKKKIQDYASDLIEMWKDIVIKETNKNKKNGNG+SKEPSKIGSPSAESVKVEN Q
Sbjct: 61  HLTKHPKKKIQDYASDLIEMWKDIVIKETNKNKKNGNGNSKEPSKIGSPSAESVKVENFQ 120

Query: 121 KSSSMKAERVSKVEQFDRNGSTSSVKFSRSASAVSEKNSVKVEKTDSVVKVERIVKEEKK 180
           KSSSMK ERVSKVEQF+R GSTSSVKFSRSASAVSEKNSVKVEKTDSVVKVER+VKEEKK
Sbjct: 121 KSSSMKVERVSKVEQFNRIGSTSSVKFSRSASAVSEKNSVKVEKTDSVVKVERMVKEEKK 180

Query: 181 ISIEKKPSGAAGPPKLTSMIKSKDAARDKIRELLVEAFSKVPGEADEDVMDEVNASDPIR 240
           ISIEKKPSGAAGPPKLTSMIKSKDAARDKIRELLVEAFSKVPGEADEDV+DEVNASDPIR
Sbjct: 181 ISIEKKPSGAAGPPKLTSMIKSKDAARDKIRELLVEAFSKVPGEADEDVIDEVNASDPIR 240

Query: 241 VAVSVESVMFENWGGSTGAQKAKYRSIMFNLKDPKNPDFRRKVLLGLIKPERMTNLSTTD 300
           VAVSVESVMFENWGGSTGAQKAKYRSIMFNLKDPKNPDFRRKVLLGLIKPERMTNLSTTD
Sbjct: 241 VAVSVESVMFENWGGSTGAQKAKYRSIMFNLKDPKNPDFRRKVLLGLIKPERMTNLSTTD 300

Query: 301 MASDQRKRENEEIAQKALFECERGGAPKATTDQFKCGRCGQRKTTYYQLQTRSADEPMTT 360
           MASDQRKRENEEIAQKALFECERGGAPKATTDQFKCGRCGQRKTTYYQLQTRSADEPMTT
Sbjct: 301 MASDQRKRENEEIAQKALFECERGGAPKATTDQFKCGRCGQRKTTYYQLQTRSADEPMTT 360

Query: 361 FVTCVNCNNHWKFC 375
           FVTCVNCNNHWKFC
Sbjct: 361 FVTCVNCNNHWKFC 374

[Close]

BLAST of Carg05937 vs. ExPASy TrEMBL
Match: A0A0A0KDH9 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G014610 PE=4 SV=1)

HSP 1 Score: 643.7 bits (1659), Expect = 4.9e-181
Identity = 339/374 (90.64%), Postives = 352/374 (94.12%), Query Frame = 0


Query: 1   MEKELVELFEAAKKAADAAAARSNDGGAEESRCLDALRQLKKFPVTYQILVSTQVGKRLR 60
           ME ELVELFEAAKKAADAAAA SNDGGAEESRCLDALRQLKKFPVTYQILVSTQVGKRLR
Sbjct: 1   MENELVELFEAAKKAADAAAAPSNDGGAEESRCLDALRQLKKFPVTYQILVSTQVGKRLR 60

Query: 61  HLTKHPKKKIQDYASDLIEMWKDIVIKETNKNKKNGNGDSKEPSKIGSPSAESVKVENLQ 120
           HLTKHPKKKIQ++ASDLIEMWK+IVIKETNKNKKNGN  SK+  KIGSPSAESVKVE  Q
Sbjct: 61  HLTKHPKKKIQEHASDLIEMWKEIVIKETNKNKKNGNASSKDSPKIGSPSAESVKVEKFQ 120

Query: 121 KSSSMKAERVSKVEQFDRNGSTSSVKFSRSASAVSEKNSVKVEKTDSVVKVERIVKEEKK 180
           KSSSMK ERVSKVEQFDRNG+TSSVK+S+S S VSE+NSVKVEKTDS+VKVER+VKEEKK
Sbjct: 121 KSSSMKVERVSKVEQFDRNGATSSVKYSKSESVVSERNSVKVEKTDSMVKVERVVKEEKK 180

Query: 181 ISIEKKPSGAAGPPKLTSMIKSKDAARDKIRELLVEAFSKVPGEADEDVMDEVNASDPIR 240
            S     SGAA PPKLTSMIKSKDAARDKIRELL EAFSKVPGEADE+ MDEVNASDPIR
Sbjct: 181 PS-----SGAAAPPKLTSMIKSKDAARDKIRELLFEAFSKVPGEADEEFMDEVNASDPIR 240

Query: 241 VAVSVESVMFENWGGSTGAQKAKYRSIMFNLKDPKNPDFRRKVLLGLIKPERMTNLSTTD 300
           VAVSVESVMFENWGGSTGAQKAKYRSIMFNLKDPKNPDFRRKVLLGLIKPERM N+ST D
Sbjct: 241 VAVSVESVMFENWGGSTGAQKAKYRSIMFNLKDPKNPDFRRKVLLGLIKPERMINMSTAD 300

Query: 301 MASDQRKRENEEIAQKALFECERGGAPKATTDQFKCGRCGQRKTTYYQLQTRSADEPMTT 360
           MASDQRKRENEEIAQKALF+CERGGAPKATTDQFKCGRCGQRKTTYYQLQTRSADEPMTT
Sbjct: 301 MASDQRKRENEEIAQKALFDCERGGAPKATTDQFKCGRCGQRKTTYYQLQTRSADEPMTT 360

Query: 361 FVTCVNCNNHWKFC 375
           FVTCVNCNNHWKFC
Sbjct: 361 FVTCVNCNNHWKFC 369

[Close]

BLAST of Carg05937 vs. ExPASy TrEMBL
Match: A0A5A7U9K1 (Transcription elongation factor TFIIS OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold409G002160 PE=4 SV=1)

HSP 1 Score: 642.1 bits (1655), Expect = 1.4e-180
Identity = 338/374 (90.37%), Postives = 351/374 (93.85%), Query Frame = 0


Query: 1   MEKELVELFEAAKKAADAAAARSNDGGAEESRCLDALRQLKKFPVTYQILVSTQVGKRLR 60
           ME ELVELFEAAKKAADAAAA SNDGGAEESRCLDALRQLKKFPVTYQILVSTQVGKRLR
Sbjct: 1   MENELVELFEAAKKAADAAAAPSNDGGAEESRCLDALRQLKKFPVTYQILVSTQVGKRLR 60

Query: 61  HLTKHPKKKIQDYASDLIEMWKDIVIKETNKNKKNGNGDSKEPSKIGSPSAESVKVENLQ 120
           HLTKHPKKKIQ++ASDLIEMWK+IVIKETNKNKKNGN  SK+  KIGSPS ESVKVE  Q
Sbjct: 61  HLTKHPKKKIQEHASDLIEMWKEIVIKETNKNKKNGNASSKDSPKIGSPSVESVKVEKFQ 120

Query: 121 KSSSMKAERVSKVEQFDRNGSTSSVKFSRSASAVSEKNSVKVEKTDSVVKVERIVKEEKK 180
           KSSSMK ERVSKVEQFDRNG+TSSVK+SRS SAVS+ +SVK EKTDSVVKVERIVKEEKK
Sbjct: 121 KSSSMKVERVSKVEQFDRNGATSSVKYSRSESAVSDSSSVKFEKTDSVVKVERIVKEEKK 180

Query: 181 ISIEKKPSGAAGPPKLTSMIKSKDAARDKIRELLVEAFSKVPGEADEDVMDEVNASDPIR 240
            S     SGAA PPKLTSM+KSKDAARDKIRELL EAFSKVPGEADEDVMDEVNASDPIR
Sbjct: 181 PS-----SGAAAPPKLTSMVKSKDAARDKIRELLFEAFSKVPGEADEDVMDEVNASDPIR 240

Query: 241 VAVSVESVMFENWGGSTGAQKAKYRSIMFNLKDPKNPDFRRKVLLGLIKPERMTNLSTTD 300
           VA+SVESVMFENWGGSTGAQKAKYRSIMFNLKDPKNPDFRRKVLLGLIKPERM N++T D
Sbjct: 241 VAISVESVMFENWGGSTGAQKAKYRSIMFNLKDPKNPDFRRKVLLGLIKPERMINMTTAD 300

Query: 301 MASDQRKRENEEIAQKALFECERGGAPKATTDQFKCGRCGQRKTTYYQLQTRSADEPMTT 360
           MASDQRKRENEEIAQKALF+CERGGAPKATTDQFKCGRCGQRKTTYYQLQTRSADEPMTT
Sbjct: 301 MASDQRKRENEEIAQKALFDCERGGAPKATTDQFKCGRCGQRKTTYYQLQTRSADEPMTT 360

Query: 361 FVTCVNCNNHWKFC 375
           FVTCVNCNNHWKFC
Sbjct: 361 FVTCVNCNNHWKFC 369

[Close]

BLAST of Carg05937 vs. ExPASy TrEMBL
Match: A0A1S3C448 (transcription elongation factor TFIIS OS=Cucumis melo OX=3656 GN=LOC103496629 PE=4 SV=1)

HSP 1 Score: 642.1 bits (1655), Expect = 1.4e-180
Identity = 338/374 (90.37%), Postives = 351/374 (93.85%), Query Frame = 0


Query: 1   MEKELVELFEAAKKAADAAAARSNDGGAEESRCLDALRQLKKFPVTYQILVSTQVGKRLR 60
           ME ELVELFEAAKKAADAAAA SNDGGAEESRCLDALRQLKKFPVTYQILVSTQVGKRLR
Sbjct: 1   MENELVELFEAAKKAADAAAAPSNDGGAEESRCLDALRQLKKFPVTYQILVSTQVGKRLR 60

Query: 61  HLTKHPKKKIQDYASDLIEMWKDIVIKETNKNKKNGNGDSKEPSKIGSPSAESVKVENLQ 120
           HLTKHPKKKIQ++ASDLIEMWK+IVIKETNKNKKNGN  SK+  KIGSPS ESVKVE  Q
Sbjct: 61  HLTKHPKKKIQEHASDLIEMWKEIVIKETNKNKKNGNASSKDSPKIGSPSVESVKVEKFQ 120

Query: 121 KSSSMKAERVSKVEQFDRNGSTSSVKFSRSASAVSEKNSVKVEKTDSVVKVERIVKEEKK 180
           KSSSMK ERVSKVEQFDRNG+TSSVK+SRS SAVS+ +SVK EKTDSVVKVERIVKEEKK
Sbjct: 121 KSSSMKVERVSKVEQFDRNGATSSVKYSRSESAVSDSSSVKFEKTDSVVKVERIVKEEKK 180

Query: 181 ISIEKKPSGAAGPPKLTSMIKSKDAARDKIRELLVEAFSKVPGEADEDVMDEVNASDPIR 240
            S     SGAA PPKLTSM+KSKDAARDKIRELL EAFSKVPGEADEDVMDEVNASDPIR
Sbjct: 181 PS-----SGAAAPPKLTSMVKSKDAARDKIRELLFEAFSKVPGEADEDVMDEVNASDPIR 240

Query: 241 VAVSVESVMFENWGGSTGAQKAKYRSIMFNLKDPKNPDFRRKVLLGLIKPERMTNLSTTD 300
           VA+SVESVMFENWGGSTGAQKAKYRSIMFNLKDPKNPDFRRKVLLGLIKPERM N++T D
Sbjct: 241 VAISVESVMFENWGGSTGAQKAKYRSIMFNLKDPKNPDFRRKVLLGLIKPERMINMTTAD 300

Query: 301 MASDQRKRENEEIAQKALFECERGGAPKATTDQFKCGRCGQRKTTYYQLQTRSADEPMTT 360
           MASDQRKRENEEIAQKALF+CERGGAPKATTDQFKCGRCGQRKTTYYQLQTRSADEPMTT
Sbjct: 301 MASDQRKRENEEIAQKALFDCERGGAPKATTDQFKCGRCGQRKTTYYQLQTRSADEPMTT 360

Query: 361 FVTCVNCNNHWKFC 375
           FVTCVNCNNHWKFC
Sbjct: 361 FVTCVNCNNHWKFC 369

[Close]

BLAST of Carg05937 vs. TAIR 10
Match: AT2G38560.1 (transcript elongation factor IIS )

HSP 1 Score: 383.6 bits (984), Expect = 1.8e-106
Identity = 213/381 (55.91%), Postives = 267/381 (70.08%), Query Frame = 0


Query: 1   MEKELVELFEAAKKAADAAAARS-NDGGAEESRCLDALRQLKKFPVTYQILVSTQVGKRL 60
           ME +L++LFE AKKAADAAA       G E S+C+DAL+QLKKFPVTY  LV+TQVGK+L
Sbjct: 1   MESDLIDLFEGAKKAADAAALDGVTSSGPEVSQCIDALKQLKKFPVTYDTLVATQVGKKL 60

Query: 61  RHLTKHPKKKIQDYASDLIEMWKDIVIKETNKNKKNGNGDSKEPSKIGSPSAES------ 120
           R L KHP + I+  A+DL+E+WK +VI+ET K KK    +  + +K+     E       
Sbjct: 61  RSLAKHPVEDIKSVATDLLEIWKKVVIEETAKAKKTEGTNGCKEAKVNKMDVEKPSNPAP 120

Query: 121 VKVENLQKSSSMKAERVSKVEQFDRNGSTSSVKFSRSASAVSEKNSVKVEKTDSVVKVER 180
           VKV+ LQ+  S K+ +V + E    N   + VK  R    +   N  K++     VK E+
Sbjct: 121 VKVQKLQRGDSAKSIKVERKE--PDNKVVTGVKIERKVPDIKVTNGTKIDYRGQAVKDEK 180

Query: 181 IVKEEKKISIEKKPSGAAGPPKLTSMIKSKDAARDKIRELLVEAFSKVPGEADEDVMDEV 240
           + K+ +  S++     A  PPKLT+M+K  D  RDKIRELLVEA  +V GEAD+   + V
Sbjct: 181 VSKDNQS-SMKAPAKAANAPPKLTAMLKCNDPVRDKIRELLVEALCRVAGEADDYERESV 240

Query: 241 NASDPIRVAVSVESVMFENWGGSTGAQKAKYRSIMFNLKDPKNPDFRRKVLLGLIKPERM 300
           NASDP+RVAVSVES+MFE  G STGAQK KYRSIMFNL+D  NPD RR+VL G I PE++
Sbjct: 241 NASDPLRVAVSVESLMFEKLGRSTGAQKLKYRSIMFNLRDSNNPDLRRRVLTGEISPEKL 300

Query: 301 TNLSTTDMASDQRKRENEEIAQKALFECERGGAPKATTDQFKCGRCGQRKTTYYQLQTRS 360
             LS  DMASD+RK+EN +I +KALF+CERG A KA+TDQFKCGRCGQRK TYYQ+QTRS
Sbjct: 301 ITLSAEDMASDKRKQENNQIKEKALFDCERGLAAKASTDQFKCGRCGQRKCTYYQMQTRS 360

Query: 361 ADEPMTTFVTCVNCNNHWKFC 375
           ADEPMTT+VTCVNC+NHWKFC
Sbjct: 361 ADEPMTTYVTCVNCDNHWKFC 378

[Close]

BLAST of Carg05937 vs. TAIR 10
Match: AT2G42730.1 (F-box family protein )

HSP 1 Score: 102.1 bits (253), Expect = 1.0e-21
Identity = 59/130 (45.38%), Postives = 81/130 (62.31%), Query Frame = 0


Query: 194 PKLTSMIKSKDAARDKIRELLVEAFSKVPGE-ADEDVMDEVNASDPIRVAVSVESVMFEN 253
           P  ++M K+ D+ RDK+RE+L  +  KV  E  D ++   V A DP  VAVSVES MFE 
Sbjct: 594 PTHSTMKKTGDSKRDKVREILQTSLVKVASEIVDTEMKTRVTACDPSVVAVSVESAMFEK 653

Query: 254 WGGSTGAQKAKYRSIMFNLKDPKNPDFRRKVLLGLIKPERMTNLSTTDMASDQRKRENEE 313
            G   G  KAKYRSI+FN+ D  NPD RRKVL+G I  ER+  +   +M S++ ++E + 
Sbjct: 654 LGCFMGPHKAKYRSILFNMGDSNNPDLRRKVLIGEINGERLVTMERQEMGSEKIQKEVQR 713

Query: 314 IAQKALFECE 323
           I + A F+ E
Sbjct: 714 IKENARFKEE 723

[Close]

BLAST of Carg05937 vs. TAIR 10
Match: AT4G18720.1 (Transcription factor IIS protein )

HSP 1 Score: 99.4 bits (246), Expect = 6.6e-21
Identity = 56/111 (50.45%), Postives = 71/111 (63.96%), Query Frame = 0


Query: 194 PKLTSMIKSKDAARDKIRELLVEAFSKVPGE-ADEDVMDEVNASDPIRVAVSVESVMFEN 253
           P   +M K+ D+ RDK+RE+L  + +KV  E  D ++   V A DP  VAVSVE+ MFEN
Sbjct: 105 PTHATMKKTGDSKRDKVREILQTSLAKVASEVVDTEMKTRVTACDPWVVAVSVETAMFEN 164

Query: 254 WGGSTGAQKAKYRSIMFNLKDPKNPDFRRKVLLGLIKPERMTNLSTTDMAS 304
            G   G QKAKYRSI+FN+ D  NPD RRKVLLG I  ER+  +   +M S
Sbjct: 165 LGCFMGPQKAKYRSILFNMGDSNNPDLRRKVLLGEISGERLVKMEKEEMGS 215

[Close]

BLAST of Carg05937 vs. TAIR 10
Match: AT5G42325.1 (Transcription factor IIS protein )

HSP 1 Score: 69.7 bits (169), Expect = 5.6e-12
Identity = 47/131 (35.88%), Postives = 71/131 (54.20%), Query Frame = 0


Query: 194 PKLTSMIKSKDAARDKIRELLVEAFSKVPGEADEDVMDE--VNASDPIRVAVSVESVMFE 253
           P  ++M K+ D+ RDK+ E+L  + +KV  E  +  M    +   DP  VAVSVES M  
Sbjct: 104 PTHSTMKKTGDSKRDKVHEILQSSLAKVATEVVDTEMKRRVMTVCDPWVVAVSVESAM-- 163

Query: 254 NWGGSTGAQKAKYRSIMFNLKDPKNPDFRRKVLLGLIKPERMTNLSTTDMASDQRKRENE 313
                         SI+FN+ D  NPD RRKVL+G I  ER+  +   +M S++ ++E +
Sbjct: 164 --------------SILFNMGDSNNPDLRRKVLIGEISGERLVKMEKDEMGSEKIQKEVQ 218

Query: 314 EIAQKALFECE 323
            I ++A F+ E
Sbjct: 224 RIKERARFKEE 218

[Close]

BLAST of Carg05937 vs. TAIR 10
Match: AT5G25520.1 (SPOC domain / Transcription elongation factor S-II protein )

HSP 1 Score: 60.5 bits (145), Expect = 3.4e-09
Identity = 32/83 (38.55%), Postives = 51/83 (61.45%), Query Frame = 0


Query: 237 DPIRVAVSVESVMFENWGGSTGAQKAKYRSIMFNLKDPKNPDFRRKVLLGLIKPERMTNL 296
           DP  +A  +E  +F+ +GG     K K RS++FNLKD  NP+ R  V+ G I PER+ N+
Sbjct: 359 DPELLASKIELELFKLFGGVNKKYKEKGRSLLFNLKDKNNPELRESVMSGKISPERLCNM 418

Query: 297 STTDMASDQ----RKRENEEIAQ 316
           +  ++AS +    R+ + EE+A+
Sbjct: 419 TAEELASKELSQWRQAKAEEMAE 441

The following BLAST results are available for this feature:

BLAST of Carg05937 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG7033260.1	6.7e-201	100.00	Transcription elongation factor TFIIS, partial [Cucurbita argyrosperma subsp. ar...	[more]
KAG6602582.1	1.7e-199	99.20	Transcription elongation factor TFIIS, partial [Cucurbita argyrosperma subsp. so...	[more]
XP_022957122.1	4.8e-199	98.93	transcription elongation factor TFIIS-like [Cucurbita moschata]	[more]
XP_023531955.1	2.0e-197	98.40	transcription elongation factor TFIIS-like [Cucurbita pepo subsp. pepo]	[more]
XP_022989946.1	3.8e-196	97.86	transcription elongation factor TFIIS-like [Cucurbita maxima]	[more]

BLAST of Carg05937 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9ZVH8	2.5e-105	55.91	Transcription elongation factor TFIIS OS=Arabidopsis thaliana OX=3702 GN=TFIIS P...	[more]
P20232	3.2e-28	28.61	Transcription elongation factor S-II OS=Drosophila melanogaster OX=7227 GN=TfIIS...	[more]
Q2KI09	5.5e-28	28.99	Transcription elongation factor A protein 3 OS=Bos taurus OX=9913 GN=TCEA3 PE=2 ...	[more]
O75764	7.1e-28	29.07	Transcription elongation factor A protein 3 OS=Homo sapiens OX=9606 GN=TCEA3 PE=...	[more]
Q15560	4.6e-27	27.96	Transcription elongation factor A protein 2 OS=Homo sapiens OX=9606 GN=TCEA2 PE=...	[more]

BLAST of Carg05937 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1GYA3	2.3e-199	98.93	transcription elongation factor TFIIS-like OS=Cucurbita moschata OX=3662 GN=LOC1...	[more]
A0A6J1JLK7	1.9e-196	97.86	transcription elongation factor TFIIS-like OS=Cucurbita maxima OX=3661 GN=LOC111...	[more]
A0A0A0KDH9	4.9e-181	90.64	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G014610 PE=4 SV=1	[more]
A0A5A7U9K1	1.4e-180	90.37	Transcription elongation factor TFIIS OS=Cucumis melo var. makuwa OX=1194695 GN=...	[more]
A0A1S3C448	1.4e-180	90.37	transcription elongation factor TFIIS OS=Cucumis melo OX=3656 GN=LOC103496629 PE...	[more]

BLAST of Carg05937 vs. TAIR 10


Match Name	E-value	Identity	Description
AT2G38560.1	1.8e-106	55.91	transcript elongation factor IIS	[more]
AT2G42730.1	1.0e-21	45.38	F-box family protein	[more]
AT4G18720.1	6.6e-21	50.45	Transcription factor IIS protein	[more]
AT5G42325.1	5.6e-12	35.88	Transcription factor IIS protein	[more]
AT5G25520.1	3.4e-09	38.55	SPOC domain / Transcription elongation factor S-II protein	[more]

InterPro

Analysis Name: InterPro Annotations of Silver-seed gourd (SMH-JMG-627) v2
Date Performed: 2021-10-25

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001222	Zinc finger, TFIIS-type	SMART	SM00440	Cys4_2	coord: 334..373 e-value: 9.7E-24 score: 94.9
IPR001222	Zinc finger, TFIIS-type	PFAM	PF01096	TFIIS_C	coord: 334..372 e-value: 1.1E-19 score: 70.0
IPR001222	Zinc finger, TFIIS-type	PROSITE	PS00466	ZF_TFIIS_1	coord: 336..371
IPR001222	Zinc finger, TFIIS-type	PROSITE	PS51133	ZF_TFIIS_2	coord: 332..372 score: 14.636859
IPR003618	Transcription elongation factor S-II, central domain	SMART	SM00510	mid_6	coord: 204..312 e-value: 4.2E-34 score: 129.3
IPR003618	Transcription elongation factor S-II, central domain	PFAM	PF07500	TFIIS_M	coord: 204..320 e-value: 2.9E-30 score: 105.1
IPR003618	Transcription elongation factor S-II, central domain	PROSITE	PS51321	TFIIS_CENTRAL	coord: 206..329 score: 32.060188
IPR003617	Transcription elongation factor, TFIIS/CRSP70, N-terminal, sub-type	SMART	SM00509	TFS2_5	coord: 8..87 e-value: 2.6E-23 score: 93.4
IPR017923	Transcription factor IIS, N-terminal	PFAM	PF08711	Med26	coord: 36..85 e-value: 2.3E-11 score: 43.5
IPR017923	Transcription factor IIS, N-terminal	PROSITE	PS51319	TFIIS_N	coord: 10..88 score: 20.947113
IPR036575	Transcription elongation factor S-II, central domain superfamily	GENE3D	1.10.472.30		coord: 169..302 e-value: 5.1E-25 score: 89.9
IPR036575	Transcription elongation factor S-II, central domain superfamily	SUPERFAMILY	46942	Elongation factor TFIIS domain 2	coord: 195..304
IPR035100	Transcription elongation factor, IIS-type	PIRSF	PIRSF006704	TFIIS	coord: 2..374 e-value: 1.2E-96 score: 321.8
None	No IPR available	GENE3D	2.20.25.10		coord: 303..374 e-value: 1.2E-27 score: 97.6
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 101..126
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 90..143
None	No IPR available	PANTHER	PTHR11477:SF36	TRANSCRIPTION ELONGATION FACTOR TFIIS	coord: 1..374
None	No IPR available	PANTHER	PTHR11477	TRANSCRIPTION FACTOR S-II ZINC FINGER DOMAIN-CONTAINING PROTEIN	coord: 1..374
None	No IPR available	CDD	cd13749	Zn-ribbon_TFIIS	coord: 327..373 e-value: 6.06741E-30 score: 107.307
None	No IPR available	CDD	cd00183	TFIIS_I	coord: 24..85 e-value: 4.24803E-16 score: 70.415
None	No IPR available	SUPERFAMILY	57783	Zinc beta-ribbon	coord: 319..372
IPR035441	TFIIS/LEDGF domain superfamily	GENE3D	1.20.930.10	Conserved domain common to transcription factors TFIIS, elongin A, CRSP70	coord: 1..101 e-value: 7.3E-24 score: 85.4
IPR035441	TFIIS/LEDGF domain superfamily	SUPERFAMILY	47676	Conserved domain common to transcription factors TFIIS, elongin A, CRSP70	coord: 27..99
IPR006289	Transcription elongation factor, TFIIS	TIGRFAM	TIGR01385	TIGR01385	coord: 12..374 e-value: 4.2E-97 score: 323.4

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Carg05937-RA	Carg05937-RA	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006355	regulation of transcription, DNA-templated
biological_process	GO:0006414	translational elongation
biological_process	GO:0006351	transcription, DNA-templated
cellular_component	GO:0005634	nucleus
molecular_function	GO:0003746	translation elongation factor activity
molecular_function	GO:0008270	zinc ion binding
molecular_function	GO:0003676	nucleic acid binding