Carg05917 (gene) Silver-seed gourd (SMH-JMG-627) v2

Overview
NameCarg05917
Typegene
OrganismCucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
DescriptionUnknown protein
LocationCarg_Chr04: 21131994 .. 21133307 (+)
RNA-Seq ExpressionCarg05917
SyntenyCarg05917
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATATACTTTTATTTAGTATAGAATGTAAGTTTCTCCCTAAGTTTATATTCGTAGAGCACATTATTCCAAATTTAATATAAAATAAAAATTTGATAATTAGTGAGTGAATTAGAAAAAAATTGAATATAAAATAATTAACTTGGGAACAATTTGGAGAATTTGAGAGTTAAAATGGATTTTATTTATAAAGAAAAAAGGAAAAATGATCTTAATCGTACGGCCAGAACTCATCCATTTACTACGCCGCCCGGATCAATTGATCTGTCCTCGCTCGTCGTCATGGTCTGGCGGATCTTTTCCAATTTCCGGCTCCGGCAGATCTCTCTTGCAGTCGCTTTACCTTCTTCCGCTTATCCTTTTCCCAATTCAGGGTCCGAATGCTACTGACCCACTCAGGTACCTTTTCCAGAACCCTAATTTCTATCTTACTCCTCTTACCATTAGTTTCTTCTTATTTGGTTGATTACCACGTAGGCTGAACTAAACTGGAATGTGCTCGAATTATGGAAATTTTGAGCCTGTTTACAAAGTCCCGTTTGACTATTGAGTCTGAATTTGCTTTTCTCAATGCATGGTTTAAATAATGTTTGTTTGTTTGTTTTTTTTCGAAAATTTTAAATTTGAAAAGTTGCTTGGTGCTTACAAATGATTTCCTGGTAATTCTAGTAGCTGTACTTGCCTCTAATAGGACGCTGGCTCATTTATATTTGCTGTCAAATTTTCGGCTTCCGTTTTCACAATTTGCATCTAATTTCCGTTCGATTGGTGTTTTGATGTTGCTGATACAGTACGTTGAAGCCTTGCGTAATAATTTATGATGAAGGAGCTTGGACAAGAGTGCTGATTACAAGAAATTAAAGAAGTTCAAATGTCCACCCCAAATTTGTTGTACTGAAAAATACATTAACGTCAACTTGATGATGCTGTTTTAGTTTTAATACAACTTGGATATGTATTCTTCTTCATGTTCAGAATTTCTAGACGGCAGTTCCTTGGATTAGTATCTAACCCTACAATGTTATGCAATGAAGTCGCTTGTAGATGGTTAATATCCTAAAGGTGGGCCTCTAGGGGAATTTAAAACCGGGTCCTAGATATGTTCCATGATTCTTACATTTAAAGCTTGAGATTTCTTTGAAATTATTGGATTCTAAGTCTGATATTGATATTATTCAAATTGTATGTAATTAATTAAGTTCCTAGTCTACTTTTACCTGAAGCGTTCTTAGTGTTGTTATGGCGTTAACATGTGCCATTGCTACCTTTTATTGATAGGTGATTCCGCCTGGGATTCAGTTTCTTCCTGCTGATTAA

mRNA sequence

ATATACTTTTATTTAGTATAGAATGTAAGTTTCTCCCTAAGTTTATATTCGTAGAGCACATTATTCCAAATTTAATATAAAATAAAAATTTGATAATTAGTGAGTGAATTAGAAAAAAATTGAATATAAAATAATTAACTTGGGAACAATTTGGAGAATTTGAGAGTTAAAATGGATTTTATTTATAAAGAAAAAAGGAAAAATGATCTTAATCGTACGGCCAGAACTCATCCATTTACTACGCCGCCCGGATCAATTGATCTGTCCTCGCTCGTCGTCATGGTCTGGCGGATCTTTTCCAATTTCCGGCTCCGGCAGATCTCTCTTGCAGTCGCTTTACCTTCTTCCGCTTATCCTTTTCCCAATTCAGGGTCCGAATGCTACTGACCCACTCAGTACGTTGAAGCCTTGCGTGATTCCGCCTGGGATTCAGTTTCTTCCTGCTGATTAA

Coding sequence (CDS)

ATGATCTTAATCGTACGGCCAGAACTCATCCATTTACTACGCCGCCCGGATCAATTGATCTGTCCTCGCTCGTCGTCATGGTCTGGCGGATCTTTTCCAATTTCCGGCTCCGGCAGATCTCTCTTGCAGTCGCTTTACCTTCTTCCGCTTATCCTTTTCCCAATTCAGGGTCCGAATGCTACTGACCCACTCAGTACGTTGAAGCCTTGCGTGATTCCGCCTGGGATTCAGTTTCTTCCTGCTGATTAA

Protein sequence

MILIVRPELIHLLRRPDQLICPRSSSWSGGSFPISGSGRSLLQSLYLLPLILFPIQGPNATDPLSTLKPCVIPPGIQFLPAD
Homology
[Close]
BLAST of Carg05917 vs. NCBI nr
Match: KAG7033240.1 (hypothetical protein SDJN02_07294 [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 168.7 bits (426), Expect = 2.1e-38
Identity = 82/82 (100.00%), Postives = 82/82 (100.00%), Query Frame = 0 

Query: 1  MILIVRPELIHLLRRPDQLICPRSSSWSGGSFPISGSGRSLLQSLYLLPLILFPIQGPNA 60
          MILIVRPELIHLLRRPDQLICPRSSSWSGGSFPISGSGRSLLQSLYLLPLILFPIQGPNA
Sbjct: 1  MILIVRPELIHLLRRPDQLICPRSSSWSGGSFPISGSGRSLLQSLYLLPLILFPIQGPNA 60

Query: 61 TDPLSTLKPCVIPPGIQFLPAD 83
          TDPLSTLKPCVIPPGIQFLPAD
Sbjct: 61 TDPLSTLKPCVIPPGIQFLPAD 82

[Close]
BLAST of Carg05917 vs. NCBI nr
Match: KAG6602562.1 (hypothetical protein SDJN03_07795, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 71.2 bits (173), Expect = 4.5e-09
Identity = 34/34 (100.00%), Postives = 34/34 (100.00%), Query Frame = 0 

Query: 39  RSLLQSLYLLPLILFPIQGPNATDPLSTLKPCVI 73
           RSLLQSLYLLPLILFPIQGPNATDPLSTLKPCVI
Sbjct: 345 RSLLQSLYLLPLILFPIQGPNATDPLSTLKPCVI 378

The following BLAST results are available for this feature:
BLAST of Carg05917 vs. NCBI nr
Match NameE-valueIdentityDescription
KAG7033240.12.1e-38100.00hypothetical protein SDJN02_07294 [Cucurbita argyrosperma subsp. argyrosperma][more]
KAG6602562.14.5e-09100.00hypothetical protein SDJN03_07795, partial [Cucurbita argyrosperma subsp. sorori... [more]
BLAST of Carg05917 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of Carg05917 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of Carg05917 vs. NCBI nr
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Carg05917-RACarg05917-RAmRNA