Carg05831 (gene) Silver-seed gourd (SMH-JMG-627) v2

Overview


Name	Carg05831
Type	gene
Organism	Cucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
Description	50S ribosomal protein L29, chloroplastic-like
Location	Carg_Chr16: 4699899 .. 4703337 (+)
RNA-Seq Expression	Carg05831
Synteny	Carg05831

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

AATCGAAAATAACAATAATAGAAGGGGAGAGAGCTTATCTTCTTCTTGAATCGCAGGTGACTGAGCGAACTCTACGAACACACTCTGAACATGATGAACCTTTCAATTGCTTCGCCTTCGAGCGTTGCTATACCTGCAAAGTTTCTTAGCTCGACCTCCAAATCATCCTTCAATGGCCTTCAAATCCGTTTCCCATTTTCGTTTCGCGTTCCTCCTAAAGCAGCATGTACCGGAGGCCGCAATTCGCCGGTGGTAATGATGGCCAAGAGGGAGGAGGAGTTGAAAGATATCAGAGCCAAAACTACTGAGGAAATAAACGAAGAGGTCGTCGATCTCAAGGGTGAACTTCTTATGCTTCGGCTTCAAAAATCAGCCCGCAATGAGTTTAAGTCTAGCGAATTCCGCCGCATGCGCAAACGGGTACTTCTTTTCCCTCGTCGATGGATTCTTAGTTAATTTTGAGTTCAATTGAAATGTGGCTATTATGTTCGTCTCAAACTTATACGTTTTACTGTCTCCTATCCTCCATTTTTTTGCTTATCTGTGCAAGATTTATTGTAGGATTCAAGTTTAGAGCTCATTGGTTTTTATTGGGGATCTAAGATTATTGGGTATTGTTTGCCGCCAAAAGAGAAGAAGTGTAGAAATAGATAAAATCTGCAGACTAAAATAATTCTAGAACTATACATTTTTGTAAGAATCAATTTAGGATTTAGATTTGAGTTGACAGTCTAGAGAGATGTGTTAGATGAACACCTCTACACAATGGTATGATATTTTCCACTATGAGCATAAGTTATCGTAGCAATGCCTCATACCAATGGAGAGAGTATTCTTTAAATATAAACCCATGATCATTCCTCAAAGTACGCCTCCCCTTAATTGAGGAGGCTCGATTTCTTTTCTTTTGGAGTTCTTTGTTCGACATTTGAAGATTTACAAATCTATTGGTACGACTAAGTTTATACCATGTTAGACGAACACGACTTTTCCACAATGGTATGATATTGTACACTTTGAGTATAAGCTCTCGTGGCTTTGCTTTGGGCTTCCTCAAAAGGCCTCATACCAATAGAGTGAGTATTCTTTAAAAGGCCTTGTACCAATGGAGAGAGTATTCTTTAAATATAAACCCATGATCATTCCCTAAATTAGTCGATGTGGGACTTTCATCATCCAACACCTCCCCCGAACAAAGTACGCCTCCCCTTAATTGAGGCTCGACTCCTTTTTCTTTTGAGGTCTTAGTCATTTTTTACTATGCCTTCGAGGAGGCTCGATTCCTTTTCTTTTGGAGTCCTTTGTTCGACATTTGAAGATTTACCAATCTATTGGTACGACTAAGTTTAGGGCATGGCTCTGATACCATGTTAGACGAACACGACTCTCCACAATGGTATGATATTGTACACTTTGAGTATAAGCTCTCGTGGCTTTACTTTGGGCTTCCTCAAAAGGCCTCATACCAATGGAGAGAGTATTCGTTGATTATAAACCCATAATTATTCCTAAATTAGCTGACGTGGGACTTTCATCATCCAACAAGATGAACTAAAACAATATTTCACTATGTTTGGAAAAAGTTTCAGAAGTTGCATTTAGAGTAAGATAGAGCCAATTAGAATGTGCTCTTGAACGTAGAAATCCAATCAAAATCGGATTTTACATTTTCGATACGATTAGCGGTATGTTCTAAAAACTCTTGAATGTCTTCATGCTAACATTTTGTTTAAGATTCCCAGAATGCCTGAAGCATGAATGAGCCATAAATGTGGAAATCTTGATTCAGTTTGGGTTTAGATTAACTTATCTTTTTCATATGAAGTTGGTTAATTGGAGAGGCCAAACCTATTTTGATCATGGAAGGATCACAATGTCTAATGCATAAGAGAGAGGGTTTTGCATTTGAACCATATGTAGCCTTCTCATGACTTCTATACCAAAACTTCTGCATGCTTGGTGCTTAATCTGGATATCAGAATTGTCTTATGGGCCTCTTACGGTTGCACTGAACAAAGTCCTGAAATGATGATGTAACAGCCCAAGTCCATTAAGTCCACCGCTAGTAGATATTGTCCTCGTTAGATTTCCCCTTTCGGACTTCCTTTCAAAGTTTTTAAAACGCGTTTGCTAGGGGAGGTTTCCACACCCTTATAAAAAATGATTCGTTCTCTTCCCCAACCGATGTGGAATCTCACAATCCACTCACCTTCGAGGCTCAGTGTCCTCGCTGGCACTCGTTCCTCTCTCCAATCGATATGAGATCCCATAAATGAAATGTTGTTGAATGGTAAAAATTTATTTACACATTATGAGTTCAGTAAGACTAGCGTTTCTTTAGAATTCACATATGATTATGATGGAGGGATGTTCTGCACTGTAATTGTGGTAAGACTTGCCCATTCCCATAGTTTTATGGTGTCAAGTCTGACATTTAGGTTGCAAACTTCTTGCATCTCTGGTCTAATCCCACGGCTTCATGATAAGGTCTTGAGATCTTTGTAGTTACCCTCTAAAGTCTTGGTTCAAAGCCTCTAACTAGGTAACTTAGTACTTGGATTTTGCCTCCGATGCCCGCTTTGGAAAAAAAAAATTATTCAATGAGGCCGCTACCAACATGGTTGCATGTAGATCTAATAGTTTGCATGCTTTGTTGCAACCAGTAGATGATATAAATTCAAGGTATTTCTTTACATCGAATGGGAAAAAACTTTCAGCCACATTGTGGCTGCTTCACCGAATAATTTTACCTGCTTCAAAGTTGACAAAGCCTCCTCGGAGATTAGTGGTATGGGTCATGAACAAAGGAATGGTGCTTGATAATCTCGGTTCTCAATAAACTCGGTACCTAACAACGTTTCAACGACTCAATATTGCGAGATCAACTAATATCTATTGAGTATTGCTGATGCAGGACAGTTGGGAAGTTTATATCATTCTTATAATTAATCTTCACCTACTTTAAGACTGCAACATCGCAGCTATACATCCAATGTTTTGGACTTGCTAACAACTTCGATTTCGTATCGCATACTCCACGAAACTTGGAATTTTGAATCGTTAATTTGTTATTGTTTGTCCGATGACAGATTGCTCGGATGCTAACCGTAAAACGTGAAAGAGAGATTGAAGAGGGAGTGGGCAAAAGGTTGTCAAGAAAGTTAGATAGAAAGTGGAAGAGAAGTATTGTGGTCAGACCACCTCCATCTCTGAAGAAGTTGCGAGAGGAAGAAGAAGCAGCTGAAGCAGCTGAGAAATCTGCTTGATCCAATCAGATACGCTCTCAACTAATATGGTAGCTTTATGAGTGTTTGAAGTTGTTGAAATTGCTATTTAAACAACGTTTTATAAGAAGATGAAAATTCTGATCATGTACTTAGCTTGTGCACAAATGGAATAGATTTCAAGGGGATCGTGTTGCGTTCATGTGCTTTCATAT

mRNA sequence

AATCGAAAATAACAATAATAGAAGGGGAGAGAGCTTATCTTCTTCTTGAATCGCAGGTGACTGAGCGAACTCTACGAACACACTCTGAACATGATGAACCTTTCAATTGCTTCGCCTTCGAGCGTTGCTATACCTGCAAAGTTTCTTAGCTCGACCTCCAAATCATCCTTCAATGGCCTTCAAATCCGTTTCCCATTTTCGTTTCGCGTTCCTCCTAAAGCAGCATGTACCGGAGGCCGCAATTCGCCGGTGGTAATGATGGCCAAGAGGGAGGAGGAGTTGAAAGATATCAGAGCCAAAACTACTGAGGAAATAAACGAAGAGGTCGTCGATCTCAAGGGTGAACTTCTTATGCTTCGGCTTCAAAAATCAGCCCGCAATGAGTTTAAGTCTAGCGAATTCCGCCGCATGCGCAAACGGATTGCTCGGATGCTAACCGTAAAACGTGAAAGAGAGATTGAAGAGGGAGTGGGCAAAAGGTTGTCAAGAAAGTTAGATAGAAAGTGGAAGAGAAGTATTGTGGTCAGACCACCTCCATCTCTGAAGAAGTTGCGAGAGGAAGAAGAAGCAGCTGAAGCAGCTGAGAAATCTGCTTGATCCAATCAGATACGCTCTCAACTAATATGGTAGCTTTATGAGTGTTTGAAGTTGTTGAAATTGCTATTTAAACAACGTTTTATAAGAAGATGAAAATTCTGATCATGTACTTAGCTTGTGCACAAATGGAATAGATTTCAAGGGGATCGTGTTGCGTTCATGTGCTTTCATAT

Coding sequence (CDS)

ATGATGAACCTTTCAATTGCTTCGCCTTCGAGCGTTGCTATACCTGCAAAGTTTCTTAGCTCGACCTCCAAATCATCCTTCAATGGCCTTCAAATCCGTTTCCCATTTTCGTTTCGCGTTCCTCCTAAAGCAGCATGTACCGGAGGCCGCAATTCGCCGGTGGTAATGATGGCCAAGAGGGAGGAGGAGTTGAAAGATATCAGAGCCAAAACTACTGAGGAAATAAACGAAGAGGTCGTCGATCTCAAGGGTGAACTTCTTATGCTTCGGCTTCAAAAATCAGCCCGCAATGAGTTTAAGTCTAGCGAATTCCGCCGCATGCGCAAACGGATTGCTCGGATGCTAACCGTAAAACGTGAAAGAGAGATTGAAGAGGGAGTGGGCAAAAGGTTGTCAAGAAAGTTAGATAGAAAGTGGAAGAGAAGTATTGTGGTCAGACCACCTCCATCTCTGAAGAAGTTGCGAGAGGAAGAAGAAGCAGCTGAAGCAGCTGAGAAATCTGCTTGA

Protein sequence

MMNLSIASPSSVAIPAKFLSSTSKSSFNGLQIRFPFSFRVPPKAACTGGRNSPVVMMAKREEELKDIRAKTTEEINEEVVDLKGELLMLRLQKSARNEFKSSEFRRMRKRIARMLTVKREREIEEGVGKRLSRKLDRKWKRSIVVRPPPSLKKLREEEEAAEAAEKSA

Homology

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BLAST of Carg05831 vs. NCBI nr
Match: KAG6577307.1 (50S ribosomal protein L29, chloroplastic, partial [Cucurbita argyrosperma subsp. sororia] >KAG7015397.1 50S ribosomal protein L29, chloroplastic [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 304.7 bits (779), Expect = 5.0e-79
Identity = 168/168 (100.00%), Postives = 168/168 (100.00%), Query Frame = 0


Query: 1   MMNLSIASPSSVAIPAKFLSSTSKSSFNGLQIRFPFSFRVPPKAACTGGRNSPVVMMAKR 60
           MMNLSIASPSSVAIPAKFLSSTSKSSFNGLQIRFPFSFRVPPKAACTGGRNSPVVMMAKR
Sbjct: 1   MMNLSIASPSSVAIPAKFLSSTSKSSFNGLQIRFPFSFRVPPKAACTGGRNSPVVMMAKR 60

Query: 61  EEELKDIRAKTTEEINEEVVDLKGELLMLRLQKSARNEFKSSEFRRMRKRIARMLTVKRE 120
           EEELKDIRAKTTEEINEEVVDLKGELLMLRLQKSARNEFKSSEFRRMRKRIARMLTVKRE
Sbjct: 61  EEELKDIRAKTTEEINEEVVDLKGELLMLRLQKSARNEFKSSEFRRMRKRIARMLTVKRE 120

Query: 121 REIEEGVGKRLSRKLDRKWKRSIVVRPPPSLKKLREEEEAAEAAEKSA 169
           REIEEGVGKRLSRKLDRKWKRSIVVRPPPSLKKLREEEEAAEAAEKSA
Sbjct: 121 REIEEGVGKRLSRKLDRKWKRSIVVRPPPSLKKLREEEEAAEAAEKSA 168

[Close]

BLAST of Carg05831 vs. NCBI nr
Match: XP_022985118.1 (50S ribosomal protein L29, chloroplastic-like [Cucurbita maxima])

HSP 1 Score: 299.7 bits (766), Expect = 1.6e-77
Identity = 165/168 (98.21%), Postives = 167/168 (99.40%), Query Frame = 0


Query: 1   MMNLSIASPSSVAIPAKFLSSTSKSSFNGLQIRFPFSFRVPPKAACTGGRNSPVVMMAKR 60
           M+NLSIASPSSVAIPAKFLSSTSKSSFNGLQIRFPFSFRVPPKAAC GGRNSPVVMMAKR
Sbjct: 1   MINLSIASPSSVAIPAKFLSSTSKSSFNGLQIRFPFSFRVPPKAACIGGRNSPVVMMAKR 60

Query: 61  EEELKDIRAKTTEEINEEVVDLKGELLMLRLQKSARNEFKSSEFRRMRKRIARMLTVKRE 120
           EEELKDIRAKTTEEINEEVVDLKGELLMLRLQKSARNEFKSSEFRRMRKRIARMLTVKRE
Sbjct: 61  EEELKDIRAKTTEEINEEVVDLKGELLMLRLQKSARNEFKSSEFRRMRKRIARMLTVKRE 120

Query: 121 REIEEGVGKRLSRKLDRKWKRSIVVRPPPSLKKLREEEEAAEAAEKSA 169
           REIEEGVGKRLSRKLDRKWK+SIVVRPPPSLKKLREEEEAAEAAEKSA
Sbjct: 121 REIEEGVGKRLSRKLDRKWKKSIVVRPPPSLKKLREEEEAAEAAEKSA 168

[Close]

BLAST of Carg05831 vs. NCBI nr
Match: XP_023551880.1 (50S ribosomal protein L29, chloroplastic-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 299.3 bits (765), Expect = 2.1e-77
Identity = 166/168 (98.81%), Postives = 167/168 (99.40%), Query Frame = 0


Query: 1   MMNLSIASPSSVAIPAKFLSSTSKSSFNGLQIRFPFSFRVPPKAACTGGRNSPVVMMAKR 60
           MMNLSIASPSSVAIPAKFLSSTSKSSF+GLQIRFPFSFRVPPKAACTGGR SPVVMMAKR
Sbjct: 1   MMNLSIASPSSVAIPAKFLSSTSKSSFHGLQIRFPFSFRVPPKAACTGGRISPVVMMAKR 60

Query: 61  EEELKDIRAKTTEEINEEVVDLKGELLMLRLQKSARNEFKSSEFRRMRKRIARMLTVKRE 120
           EEELKDIRAKTTEEINEEVVDLKGELLMLRLQKSARNEFKSSEFRRMRKRIARMLTVKRE
Sbjct: 61  EEELKDIRAKTTEEINEEVVDLKGELLMLRLQKSARNEFKSSEFRRMRKRIARMLTVKRE 120

Query: 121 REIEEGVGKRLSRKLDRKWKRSIVVRPPPSLKKLREEEEAAEAAEKSA 169
           REIEEGVGKRLSRKLDRKWKRSIVVRPPPSLKKLREEEEAAEAAEKSA
Sbjct: 121 REIEEGVGKRLSRKLDRKWKRSIVVRPPPSLKKLREEEEAAEAAEKSA 168

[Close]

BLAST of Carg05831 vs. NCBI nr
Match: XP_022929361.1 (50S ribosomal protein L29, chloroplastic-like [Cucurbita moschata])

HSP 1 Score: 292.0 bits (746), Expect = 3.4e-75
Identity = 160/162 (98.77%), Postives = 161/162 (99.38%), Query Frame = 0


Query: 1   MMNLSIASPSSVAIPAKFLSSTSKSSFNGLQIRFPFSFRVPPKAACTGGRNSPVVMMAKR 60
           MMNLSIASPSSVAIPAKFLSSTSKSSFNGLQIRFPFS RVPPKAACTGGRNSPVVMMAKR
Sbjct: 1   MMNLSIASPSSVAIPAKFLSSTSKSSFNGLQIRFPFSCRVPPKAACTGGRNSPVVMMAKR 60

Query: 61  EEELKDIRAKTTEEINEEVVDLKGELLMLRLQKSARNEFKSSEFRRMRKRIARMLTVKRE 120
           EEELKDIRAKTTEEINEEVVDLKGELLMLRLQKSARNEFKSSEFRRMRKRIARMLTVKRE
Sbjct: 61  EEELKDIRAKTTEEINEEVVDLKGELLMLRLQKSARNEFKSSEFRRMRKRIARMLTVKRE 120

Query: 121 REIEEGVGKRLSRKLDRKWKRSIVVRPPPSLKKLREEEEAAE 163
           REIEEGVGKRLSRKLDRKWK+SIVVRPPPSLKKLREEEEAAE
Sbjct: 121 REIEEGVGKRLSRKLDRKWKKSIVVRPPPSLKKLREEEEAAE 162

[Close]

BLAST of Carg05831 vs. NCBI nr
Match: XP_022977189.1 (50S ribosomal protein L29, chloroplastic-like [Cucurbita maxima])

HSP 1 Score: 282.3 bits (721), Expect = 2.7e-72
Identity = 156/168 (92.86%), Postives = 160/168 (95.24%), Query Frame = 0


Query: 1   MMNLSIASPSSVAIPAKFLSSTSKSSFNGLQIRFPFSFRVPPKAACTGGRNSPVVMMAKR 60
           MMNLSIASPSSV+ P+KFLSSTSKSSFNG QIRFPFSFRVPPK A TGGRNS VVMMAKR
Sbjct: 1   MMNLSIASPSSVSFPSKFLSSTSKSSFNGRQIRFPFSFRVPPKTASTGGRNSSVVMMAKR 60

Query: 61  EEELKDIRAKTTEEINEEVVDLKGELLMLRLQKSARNEFKSSEFRRMRKRIARMLTVKRE 120
           EEELK+IR KTTEEINEEV+DLKGELLMLRLQKSARNEFKSSEFRRMRKRIARMLTVKRE
Sbjct: 61  EEELKEIRTKTTEEINEEVIDLKGELLMLRLQKSARNEFKSSEFRRMRKRIARMLTVKRE 120

Query: 121 REIEEGVGKRLSRKLDRKWKRSIVVRPPPSLKKLREEEEAAEAAEKSA 169
           REIEEGVGKRLSRKLDRKWKRSIVVRPPPSLKKLREEE AAE AEKSA
Sbjct: 121 REIEEGVGKRLSRKLDRKWKRSIVVRPPPSLKKLREEEAAAEEAEKSA 168

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BLAST of Carg05831 vs. ExPASy Swiss-Prot
Match: Q9FJP3 (50S ribosomal protein L29, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=RPL29 PE=1 SV=1)

HSP 1 Score: 190.3 bits (482), Expect = 1.8e-47
Identity = 111/168 (66.07%), Postives = 138/168 (82.14%), Query Frame = 0


Query: 1   MMNLSIASPSSVAIPAKFLSS--TSKSSFNGLQIRFPFSFRVPPKAACTGGRNSP-VVMM 60
           M++LSIA+P + AI  +  +S  ++ SSF+G++I+   S RVP  A  +     P VVMM
Sbjct: 1   MLSLSIATPGTAAIFRRGTASATSTSSSFHGVRIQHQVSARVPAAATISSSSPKPSVVMM 60

Query: 61  AKREEELKDIRAKTTEEINEEVVDLKGELLMLRLQKSARNEFKSSEFRRMRKRIARMLTV 120
           +KRE ELK+IR+KTTE++ EEVVDLKGEL MLRLQKSARNEFKSS+FRRM+K++ARMLTV
Sbjct: 61  SKREAELKEIRSKTTEQLQEEVVDLKGELFMLRLQKSARNEFKSSDFRRMKKQVARMLTV 120

Query: 121 KREREIEEGVGKRLSRKLDRKWKRSIVVRPPPSLKKLREEEEAAEAAE 166
           KREREI+EG+ KRLSRKLDR+WK+SIV RPPPSLKKL+EEE A EAAE
Sbjct: 121 KREREIKEGIKKRLSRKLDRQWKKSIVPRPPPSLKKLQEEEAAEEAAE 168

[Close]

BLAST of Carg05831 vs. ExPASy Swiss-Prot
Match: P82248 (50S ribosomal protein L29, chloroplastic OS=Spinacia oleracea OX=3562 GN=RPL29 PE=1 SV=2)

HSP 1 Score: 157.1 bits (396), Expect = 1.7e-37
Identity = 93/152 (61.18%), Postives = 115/152 (75.66%), Query Frame = 0


Query: 23  SKSSFNGLQ---IRFPFSFRV----PPKAACTGGRNSPVVMMAKREEELKDIRAKTTEEI 82
           +KSSF+GL+   +    S R+    PP         S VV+M K+E+ELK++R KT E++
Sbjct: 26  TKSSFHGLRLPSVNLSSSLRLRVQTPP---------SSVVVMVKKEDELKELRTKTNEQL 85

Query: 83  NEEVVDLKGELLMLRLQKSARNEFKSSEFRRMRKRIARMLTVKREREIEEGVGKRLSRKL 142
           NEE++ LKGEL MLRLQ+SAR  FK S+F RMRKR+ARMLTVKREREIE+GVGKRLSRKL
Sbjct: 86  NEEILQLKGELFMLRLQRSARENFKPSDFGRMRKRVARMLTVKREREIEQGVGKRLSRKL 145

Query: 143 DRKWKRSIVVRPPPSLKKLREEEEAAEAAEKS 168
           D+ WKRSIVVRPPPSLKKL+E+  A   AEK+
Sbjct: 146 DKAWKRSIVVRPPPSLKKLQEKATAEAEAEKA 168

[Close]

BLAST of Carg05831 vs. ExPASy Swiss-Prot
Match: Q9SWI6 (50S ribosomal protein L29, chloroplastic OS=Zea mays OX=4577 GN=RPL29 PE=2 SV=1)

HSP 1 Score: 149.8 bits (377), Expect = 2.7e-35
Identity = 91/159 (57.23%), Postives = 119/159 (74.84%), Query Frame = 0


Query: 2   MNLSIASPSSVAIPAKFLSSTSKSSFNGLQIRFPFSFRVPPKAACT---GGRNSPVVMMA 61
           M+L+ ASP + +IP    +    ++F  +++    + R    A  +     R + +V MA
Sbjct: 4   MSLAAASPLA-SIPRGIAAQAPCAAFLSIRLGGATATRFAGLAVASQPAERRAAAMVAMA 63

Query: 62  KREEELKDIRAKTTEEINEEVVDLKGELLMLRLQKSARNEFKSSEFRRMRKRIARMLTVK 121
           KRE+EL++IRA TTE++ EEVVDLKGEL +LRL++SAR EFK+SEF RMRKRIARMLTVK
Sbjct: 64  KREQELEEIRAMTTEQMEEEVVDLKGELFLLRLKRSARQEFKNSEFSRMRKRIARMLTVK 123

Query: 122 REREIEEGVGKRLSRKLDRKWKRSIVVRPPPSLKKLREE 158
           REREIE+G+ KRLSRKLDRKWK+SIVVRPPPSL+  +EE
Sbjct: 124 REREIEQGINKRLSRKLDRKWKQSIVVRPPPSLRGNKEE 161

[Close]

BLAST of Carg05831 vs. ExPASy Swiss-Prot
Match: B8HMR2 (50S ribosomal protein L29 OS=Cyanothece sp. (strain PCC 7425 / ATCC 29141) OX=395961 GN=rpmC PE=3 SV=1)

HSP 1 Score: 47.0 bits (110), Expect = 2.5e-04
Identity = 21/63 (33.33%), Postives = 45/63 (71.43%), Query Frame = 0


Query: 63  ELKDIRAKTTEEINEEVVDLKGELLMLRLQKSARNEFKSSEFRRMRKRIARMLTVKRERE 122
           ++KD+   +  E+  +++DLK +L  LRLQK+ R E K  +F+ +R ++A+++T++R+R+
Sbjct: 5   KMKDLLDLSDAEVETQILDLKRQLFQLRLQKATRQEVKPHQFKHLRHQLAQLMTLERQRQ 64

Query: 123 IEE 126
           + +
Sbjct: 65  LTQ 67

[Close]

BLAST of Carg05831 vs. ExPASy Swiss-Prot
Match: Q49ZG0 (50S ribosomal protein L29 OS=Staphylococcus saprophyticus subsp. saprophyticus (strain ATCC 15305 / DSM 20229 / NCIMB 8711 / NCTC 7292 / S-41) OX=342451 GN=rpmC PE=3 SV=1)

HSP 1 Score: 46.6 bits (109), Expect = 3.2e-04
Identity = 29/62 (46.77%), Postives = 39/62 (62.90%), Query Frame = 0


Query: 65  KDIRAKTTEEINEEVVDLKGELLMLRLQKSARNEFKSSEFRRMRKRIARMLTVKREREIE 124
           K+IR  TT EI E++   K EL  LR Q +     +++  R +RK IAR+ TV REREIE
Sbjct: 4   KEIRDLTTSEIEEQIKSSKEELFNLRFQLATGQLEETARIRTVRKTIARLKTVAREREIE 63

Query: 125 EG 127
           +G
Sbjct: 64  QG 65

[Close]

BLAST of Carg05831 vs. ExPASy TrEMBL
Match: A0A6J1JCM6 (50S ribosomal protein L29, chloroplastic-like OS=Cucurbita maxima OX=3661 GN=LOC111483200 PE=3 SV=1)

HSP 1 Score: 299.7 bits (766), Expect = 7.8e-78
Identity = 165/168 (98.21%), Postives = 167/168 (99.40%), Query Frame = 0


Query: 1   MMNLSIASPSSVAIPAKFLSSTSKSSFNGLQIRFPFSFRVPPKAACTGGRNSPVVMMAKR 60
           M+NLSIASPSSVAIPAKFLSSTSKSSFNGLQIRFPFSFRVPPKAAC GGRNSPVVMMAKR
Sbjct: 1   MINLSIASPSSVAIPAKFLSSTSKSSFNGLQIRFPFSFRVPPKAACIGGRNSPVVMMAKR 60

Query: 61  EEELKDIRAKTTEEINEEVVDLKGELLMLRLQKSARNEFKSSEFRRMRKRIARMLTVKRE 120
           EEELKDIRAKTTEEINEEVVDLKGELLMLRLQKSARNEFKSSEFRRMRKRIARMLTVKRE
Sbjct: 61  EEELKDIRAKTTEEINEEVVDLKGELLMLRLQKSARNEFKSSEFRRMRKRIARMLTVKRE 120

Query: 121 REIEEGVGKRLSRKLDRKWKRSIVVRPPPSLKKLREEEEAAEAAEKSA 169
           REIEEGVGKRLSRKLDRKWK+SIVVRPPPSLKKLREEEEAAEAAEKSA
Sbjct: 121 REIEEGVGKRLSRKLDRKWKKSIVVRPPPSLKKLREEEEAAEAAEKSA 168

[Close]

BLAST of Carg05831 vs. ExPASy TrEMBL
Match: A0A6J1EMX4 (50S ribosomal protein L29, chloroplastic-like OS=Cucurbita moschata OX=3662 GN=LOC111435958 PE=3 SV=1)

HSP 1 Score: 292.0 bits (746), Expect = 1.6e-75
Identity = 160/162 (98.77%), Postives = 161/162 (99.38%), Query Frame = 0


Query: 1   MMNLSIASPSSVAIPAKFLSSTSKSSFNGLQIRFPFSFRVPPKAACTGGRNSPVVMMAKR 60
           MMNLSIASPSSVAIPAKFLSSTSKSSFNGLQIRFPFS RVPPKAACTGGRNSPVVMMAKR
Sbjct: 1   MMNLSIASPSSVAIPAKFLSSTSKSSFNGLQIRFPFSCRVPPKAACTGGRNSPVVMMAKR 60

Query: 61  EEELKDIRAKTTEEINEEVVDLKGELLMLRLQKSARNEFKSSEFRRMRKRIARMLTVKRE 120
           EEELKDIRAKTTEEINEEVVDLKGELLMLRLQKSARNEFKSSEFRRMRKRIARMLTVKRE
Sbjct: 61  EEELKDIRAKTTEEINEEVVDLKGELLMLRLQKSARNEFKSSEFRRMRKRIARMLTVKRE 120

Query: 121 REIEEGVGKRLSRKLDRKWKRSIVVRPPPSLKKLREEEEAAE 163
           REIEEGVGKRLSRKLDRKWK+SIVVRPPPSLKKLREEEEAAE
Sbjct: 121 REIEEGVGKRLSRKLDRKWKKSIVVRPPPSLKKLREEEEAAE 162

[Close]

BLAST of Carg05831 vs. ExPASy TrEMBL
Match: A0A6J1IQR3 (50S ribosomal protein L29, chloroplastic-like OS=Cucurbita maxima OX=3661 GN=LOC111477475 PE=3 SV=1)

HSP 1 Score: 282.3 bits (721), Expect = 1.3e-72
Identity = 156/168 (92.86%), Postives = 160/168 (95.24%), Query Frame = 0


Query: 1   MMNLSIASPSSVAIPAKFLSSTSKSSFNGLQIRFPFSFRVPPKAACTGGRNSPVVMMAKR 60
           MMNLSIASPSSV+ P+KFLSSTSKSSFNG QIRFPFSFRVPPK A TGGRNS VVMMAKR
Sbjct: 1   MMNLSIASPSSVSFPSKFLSSTSKSSFNGRQIRFPFSFRVPPKTASTGGRNSSVVMMAKR 60

Query: 61  EEELKDIRAKTTEEINEEVVDLKGELLMLRLQKSARNEFKSSEFRRMRKRIARMLTVKRE 120
           EEELK+IR KTTEEINEEV+DLKGELLMLRLQKSARNEFKSSEFRRMRKRIARMLTVKRE
Sbjct: 61  EEELKEIRTKTTEEINEEVIDLKGELLMLRLQKSARNEFKSSEFRRMRKRIARMLTVKRE 120

Query: 121 REIEEGVGKRLSRKLDRKWKRSIVVRPPPSLKKLREEEEAAEAAEKSA 169
           REIEEGVGKRLSRKLDRKWKRSIVVRPPPSLKKLREEE AAE AEKSA
Sbjct: 121 REIEEGVGKRLSRKLDRKWKRSIVVRPPPSLKKLREEEAAAEEAEKSA 168

[Close]

BLAST of Carg05831 vs. ExPASy TrEMBL
Match: A0A6J1FMW5 (50S ribosomal protein L29, chloroplastic-like OS=Cucurbita moschata OX=3662 GN=LOC111446894 PE=3 SV=1)

HSP 1 Score: 280.8 bits (717), Expect = 3.7e-72
Identity = 155/168 (92.26%), Postives = 160/168 (95.24%), Query Frame = 0


Query: 1   MMNLSIASPSSVAIPAKFLSSTSKSSFNGLQIRFPFSFRVPPKAACTGGRNSPVVMMAKR 60
           M+NLSIASPSSV+ P+KFLSSTSKSSFNG QIRFPFSFRVPPK A TGGRNS VVMMAKR
Sbjct: 1   MINLSIASPSSVSFPSKFLSSTSKSSFNGRQIRFPFSFRVPPKTASTGGRNSSVVMMAKR 60

Query: 61  EEELKDIRAKTTEEINEEVVDLKGELLMLRLQKSARNEFKSSEFRRMRKRIARMLTVKRE 120
           EEELK+IR KTTEEINEEV+DLKGELLMLRLQKSARNEFKSSEFRRMRKRIARMLTVKRE
Sbjct: 61  EEELKEIRTKTTEEINEEVIDLKGELLMLRLQKSARNEFKSSEFRRMRKRIARMLTVKRE 120

Query: 121 REIEEGVGKRLSRKLDRKWKRSIVVRPPPSLKKLREEEEAAEAAEKSA 169
           REIEEGVGKRLSRKLDRKWKRSIVVRPPPSLKKLREEE AAE AEKSA
Sbjct: 121 REIEEGVGKRLSRKLDRKWKRSIVVRPPPSLKKLREEEAAAEEAEKSA 168

[Close]

BLAST of Carg05831 vs. ExPASy TrEMBL
Match: A0A5D3CWZ4 (50S ribosomal protein L29 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold637G00600 PE=3 SV=1)

HSP 1 Score: 265.8 bits (678), Expect = 1.2e-67
Identity = 151/170 (88.82%), Postives = 160/170 (94.12%), Query Frame = 0


Query: 1   MMNLSIAS-PSSVAIPAKFLSSTSKSSFNGLQIRFPFSFRVPPKAACT-GGRNSPVVMMA 60
           M+NLS+AS PS++ IP+KFL+STSKS FNGLQIRFPFSF VPPK A T GGRNS VVMMA
Sbjct: 1   MINLSVASLPSALPIPSKFLNSTSKSFFNGLQIRFPFSFCVPPKTATTGGGRNSSVVMMA 60

Query: 61  KREEELKDIRAKTTEEINEEVVDLKGELLMLRLQKSARNEFKSSEFRRMRKRIARMLTVK 120
           KREEELKDIRAKTTEEINEEVVDLKGELLMLRLQKSARNEFKSSEFRRMRKRI+RMLTVK
Sbjct: 61  KREEELKDIRAKTTEEINEEVVDLKGELLMLRLQKSARNEFKSSEFRRMRKRISRMLTVK 120

Query: 121 REREIEEGVGKRLSRKLDRKWKRSIVVRPPPSLKKLREEEEAAEAAEKSA 169
           REREIEEGVGKR+SRKLDRKWK+SIVVRPPPSLKKLREEE AAE AEKSA
Sbjct: 121 REREIEEGVGKRMSRKLDRKWKKSIVVRPPPSLKKLREEEAAAEEAEKSA 170

[Close]

BLAST of Carg05831 vs. TAIR 10
Match: AT5G65220.1 (Ribosomal L29 family protein )

HSP 1 Score: 190.3 bits (482), Expect = 1.3e-48
Identity = 111/168 (66.07%), Postives = 138/168 (82.14%), Query Frame = 0


Query: 1   MMNLSIASPSSVAIPAKFLSS--TSKSSFNGLQIRFPFSFRVPPKAACTGGRNSP-VVMM 60
           M++LSIA+P + AI  +  +S  ++ SSF+G++I+   S RVP  A  +     P VVMM
Sbjct: 1   MLSLSIATPGTAAIFRRGTASATSTSSSFHGVRIQHQVSARVPAAATISSSSPKPSVVMM 60

Query: 61  AKREEELKDIRAKTTEEINEEVVDLKGELLMLRLQKSARNEFKSSEFRRMRKRIARMLTV 120
           +KRE ELK+IR+KTTE++ EEVVDLKGEL MLRLQKSARNEFKSS+FRRM+K++ARMLTV
Sbjct: 61  SKREAELKEIRSKTTEQLQEEVVDLKGELFMLRLQKSARNEFKSSDFRRMKKQVARMLTV 120

Query: 121 KREREIEEGVGKRLSRKLDRKWKRSIVVRPPPSLKKLREEEEAAEAAE 166
           KREREI+EG+ KRLSRKLDR+WK+SIV RPPPSLKKL+EEE A EAAE
Sbjct: 121 KREREIKEGIKKRLSRKLDRQWKKSIVPRPPPSLKKLQEEEAAEEAAE 168

The following BLAST results are available for this feature:

BLAST of Carg05831 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG6577307.1	5.0e-79	100.00	50S ribosomal protein L29, chloroplastic, partial [Cucurbita argyrosperma subsp....	[more]
XP_022985118.1	1.6e-77	98.21	50S ribosomal protein L29, chloroplastic-like [Cucurbita maxima]	[more]
XP_023551880.1	2.1e-77	98.81	50S ribosomal protein L29, chloroplastic-like [Cucurbita pepo subsp. pepo]	[more]
XP_022929361.1	3.4e-75	98.77	50S ribosomal protein L29, chloroplastic-like [Cucurbita moschata]	[more]
XP_022977189.1	2.7e-72	92.86	50S ribosomal protein L29, chloroplastic-like [Cucurbita maxima]	[more]

BLAST of Carg05831 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9FJP3	1.8e-47	66.07	50S ribosomal protein L29, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=RPL2...	[more]
P82248	1.7e-37	61.18	50S ribosomal protein L29, chloroplastic OS=Spinacia oleracea OX=3562 GN=RPL29 P...	[more]
Q9SWI6	2.7e-35	57.23	50S ribosomal protein L29, chloroplastic OS=Zea mays OX=4577 GN=RPL29 PE=2 SV=1	[more]
B8HMR2	2.5e-04	33.33	50S ribosomal protein L29 OS=Cyanothece sp. (strain PCC 7425 / ATCC 29141) OX=39...	[more]
Q49ZG0	3.2e-04	46.77	50S ribosomal protein L29 OS=Staphylococcus saprophyticus subsp. saprophyticus (...	[more]

BLAST of Carg05831 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1JCM6	7.8e-78	98.21	50S ribosomal protein L29, chloroplastic-like OS=Cucurbita maxima OX=3661 GN=LOC...	[more]
A0A6J1EMX4	1.6e-75	98.77	50S ribosomal protein L29, chloroplastic-like OS=Cucurbita moschata OX=3662 GN=L...	[more]
A0A6J1IQR3	1.3e-72	92.86	50S ribosomal protein L29, chloroplastic-like OS=Cucurbita maxima OX=3661 GN=LOC...	[more]
A0A6J1FMW5	3.7e-72	92.26	50S ribosomal protein L29, chloroplastic-like OS=Cucurbita moschata OX=3662 GN=L...	[more]
A0A5D3CWZ4	1.2e-67	88.82	50S ribosomal protein L29 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffo...	[more]

BLAST of Carg05831 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G65220.1	1.3e-48	66.07	Ribosomal L29 family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Silver-seed gourd (SMH-JMG-627) v2
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 151..168
None	No IPR available	PANTHER	PTHR10916	60S RIBOSOMAL PROTEIN L35/50S RIBOSOMAL PROTEIN L29	coord: 1..165
None	No IPR available	PANTHER	PTHR10916:SF1	SUBFAMILY NOT NAMED	coord: 1..165
None	No IPR available	CDD	cd00427	Ribosomal_L29_HIP	coord: 65..121 e-value: 4.13308E-16 score: 66.7422
IPR001854	Ribosomal protein L29/L35	TIGRFAM	TIGR00012	TIGR00012	coord: 66..121 e-value: 3.0E-16 score: 57.2
IPR001854	Ribosomal protein L29/L35	PFAM	PF00831	Ribosomal_L29	coord: 65..121 e-value: 1.4E-14 score: 53.7
IPR001854	Ribosomal protein L29/L35	HAMAP	MF_00374	Ribosomal_L29	coord: 62..121 score: 13.602084
IPR036049	Ribosomal protein L29/L35 superfamily	GENE3D	1.10.287.310		coord: 63..126 e-value: 4.8E-15 score: 57.2
IPR036049	Ribosomal protein L29/L35 superfamily	SUPERFAMILY	46561	Ribosomal protein L29 (L29p)	coord: 64..124

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Carg05831-RA	Carg05831-RA	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006412	translation
cellular_component	GO:0005840	ribosome
molecular_function	GO:0003735	structural constituent of ribosome