Carg05822 (gene) Silver-seed gourd (SMH-JMG-627) v2

Overview


Name	Carg05822
Type	gene
Organism	Cucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
Description	Unknown protein
Location	Carg_Chr16: 4657857 .. 4658953 (+)
RNA-Seq Expression	Carg05822
Synteny	Carg05822

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTCGACAATTCTCCTCTTATTACTCCAGAACTCGCTAACCTCATCTTCCCCTTCGCCTGCAACCGTGTAGGCCGCTCTCTGCTTCTTCTGCTCCCCATCACTTTTCTCGCTCTCTCTCTCTGAGCATTTCAGAGTCGGATTCGAAGCAGAAGTGTTGCACCATAACTGGTAATTTCGGCTTGCATGCCCTAACTTCTTTTCTTCTTTAAGATTTCAAGAACATTAGCTTATTCGAGCGATTCATGAACTTGCTTCTTGTTCTTTGTTTCATCAGTTCTTGTGTTTCTTGTTGTCTTTCGTTTTCTTCAATTCTGTTATATGCGTTGTTTTGTTTTTTCTTTTTCTGAAATCTTTATTGTTTTTGTTTCTGTTGATTTGTTGTTCATTGCCTGGGGAAAACCTACTGCGACAGGAATTTGGCGTTTATTTGCGTCGTGTCTTTAGGTTGTGTATTAATTTTGGTTTGTTTGAAATCAGTTGTGTGTTTGAAGTGAGTATGGATGGTCATTCCTTTCGTACCTTGGAATCGGGAGGATTGGCCTACATTGGCATTTCCGGTTTAAGATTGTTTTTTCCTGGAGGGAATAAAGAAAGGAATGACTCTACGAGAGTACGAACGTACATAAAGGGAAGAGAATGTGATGCTGGGAATGAGATAAAATTTTGTCTAAGTATTGGCTTCTATAAAGATGAAGTTTCGTCACTTCTCTTCACTTATGTGTGATTGGGTCCAGTTTCGGAGTTTCCCCTTGAACTACTTGTATTTATTCACTGTGTTATCTGAGACTTAGATTGTTAATAGAGTTCATTTTTCCTGCTCTTTAGTGTTTTGATTGCAATGAAAATTTGGTGTTATATACCTAGAATCGTATTGATAATTAGTTGCTACAAGGGTTGTTCACCATTTAAGATTTTCCTTAAATCTTATAATCCTGTTGGAACCTGTTATAAGTATCAAGTCGTTAGTTAATTTGTCCATTGGAAAAGCAAATTGTCTTTTGCATTGGTTTAATGCTTGGGTAATGTGAAATATCTCGTGTCTAGTAAAGGGTTTCATGGTTACATCGTTAAATTGCAGAATCCAATCAAGAGTAA

mRNA sequence

ATGTCGACAATTCTCCTCTTATTACTCCAGAACTCGCTAACCTCATCTTCCCCTTCGCCTGCAACCGTGCCGCTCTCTGCTTCTTCTGCTCCCCATCACTTTTCTCGCTCTCTCTCTCTGAGCATTTCAGAGTCGGATTCGAAGCAGAAGTGTTGCACCATAACTGAATCCAATCAAGAGTAA

Coding sequence (CDS)

ATGTCGACAATTCTCCTCTTATTACTCCAGAACTCGCTAACCTCATCTTCCCCTTCGCCTGCAACCGTGCCGCTCTCTGCTTCTTCTGCTCCCCATCACTTTTCTCGCTCTCTCTCTCTGAGCATTTCAGAGTCGGATTCGAAGCAGAAGTGTTGCACCATAACTGAATCCAATCAAGAGTAA

Protein sequence

MSTILLLLLQNSLTSSSPSPATVPLSASSAPHHFSRSLSLSISESDSKQKCCTITESNQE

Homology

The following BLAST results are available for this feature:

BLAST of Carg05822 vs.


Match Name	E-value	Identity	Description

BLAST of Carg05822 vs.


Match Name	E-value	Identity	Description

BLAST of Carg05822 vs.


Match Name	E-value	Identity	Description

BLAST of Carg05822 vs.


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Silver-seed gourd (SMH-JMG-627) v2
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 38..60

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Carg05822-RA	Carg05822-RA	mRNA