Carg05819 (gene) Silver-seed gourd (SMH-JMG-627) v2

Overview
NameCarg05819
Typegene
OrganismCucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
DescriptionUnknown protein
LocationCarg_Chr16: 4643306 .. 4644012 (-)
RNA-Seq ExpressionCarg05819
SyntenyCarg05819
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
GCTTCACTTCACGCAGCAACATCACTCACCCGAATTGGTTTCCAGCTAATATTCCGCTTCTCTGAGCTTCATCTTCCTTCCTTCCTTCCTTCCTTCTCTCTTCTTTTCAGGCTTTACAGTTCTTCCGCTGTTGTTGATTTATCGGTCACGAATCTTGTTCATTCGTCTCTTTCCGCTCCCGATTTCTACTTCTCCATCTCAGCAGGTACTTGTTTCGGATCTTCTCTTATTGATTATGTCTTCGTGTTTTCTTCCTGTTTTCCTCCTGGAGTTTGTTGATTTGTGGCTTGATTTATGATTTTTAGCGGTTTCTCTCATGTTTTCCCCTCGCATTTCTCAATAATTGATAAGCTGCGTTGCGAGTGATTTCTCTTGTGGCAGAGCCAAGTACAGAGTGGTTGAGACTTGAGCGTTAAGAGTTGGAGGATTAGTTTAATGAGAAATTTCAAAATCGATGTACTTAATTTGATTTCGAAGTCAAAAGATGCGTTTGGTTTCATCTTAGTCGTCTGGATTTGGTTTCGGAGTTTCAAAGGGATTTAAAAGAGTGTTAAGAAGTCGCAATATTAAATTAGTGAGCGTAGAAGATTCAGTTTATCAAGAATTTTATATATTTTTTACTTAAATTCATTAAAGAGTTGTTATATTGATCAAACTCATTAATTGTTGACTGTCAATGAATGGTTGTCTTTGCAGATATGGCATAG

mRNA sequence

GCTTCACTTCACGCAGCAACATCACTCACCCGAATTGGTTTCCAGCTAATATTCCGCTTCTCTGAGCTTCATCTTCCTTCCTTCCTTCCTTCCTTCTCTCTTCTTTTCAGGCTTTACAGTTCTTCCGCTGTTGTTGATTTATCGGTCACGAATCTTGTTCATTCGTCTCTTTCCGCTCCCGATTTCTACTTCTCCATCTCAGCAGATATGGCATAG

Coding sequence (CDS)

GCTTCACTTCACGCAGCAACATCACTCACCCGAATTGGTTTCCAGCTAATATTCCGCTTCTCTGAGCTTCATCTTCCTTCCTTCCTTCCTTCCTTCTCTCTTCTTTTCAGGCTTTACAGTTCTTCCGCTGTTGTTGATTTATCGGTCACGAATCTTGTTCATTCGTCTCTTTCCGCTCCCGATTTCTACTTCTCCATCTCAGCAGATATGGCATAG

Protein sequence

ASLHAATSLTRIGFQLIFRFSELHLPSFLPSFSLLFRLYSSSAVVDLSVTNLVHSSLSAPDFYFSISADMA
Homology
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BLAST of Carg05819 vs. NCBI nr
Match: KAG7015386.1 (hypothetical protein SDJN02_23021, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 132.9 bits (333), Expect = 1.1e-27
Identity = 71/71 (100.00%), Postives = 71/71 (100.00%), Query Frame = 0 

Query: 1  ASLHAATSLTRIGFQLIFRFSELHLPSFLPSFSLLFRLYSSSAVVDLSVTNLVHSSLSAP 60
          ASLHAATSLTRIGFQLIFRFSELHLPSFLPSFSLLFRLYSSSAVVDLSVTNLVHSSLSAP
Sbjct: 1  ASLHAATSLTRIGFQLIFRFSELHLPSFLPSFSLLFRLYSSSAVVDLSVTNLVHSSLSAP 60

Query: 61 DFYFSISADMA 72
          DFYFSISADMA
Sbjct: 61 DFYFSISADMA 71

The following BLAST results are available for this feature:
BLAST of Carg05819 vs. NCBI nr
Match NameE-valueIdentityDescription
KAG7015386.11.1e-27100.00hypothetical protein SDJN02_23021, partial [Cucurbita argyrosperma subsp. argyro... [more]
BLAST of Carg05819 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of Carg05819 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of Carg05819 vs. NCBI nr
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Carg05819-RACarg05819-RAmRNA