Carg05815 (gene) Silver-seed gourd (SMH-JMG-627) v2

Overview
NameCarg05815
Typegene
OrganismCucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
DescriptionTetratricopeptide-like helical
LocationCarg_Chr16: 4631784 .. 4632218 (-)
RNA-Seq ExpressionCarg05815
SyntenyCarg05815
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGTCGGTTTCTTTAGAAGCTTTGGCAATGGCTGGGATTGATTCTAATGAGTGGGCTATGGATGCTAAAGAATGGGAACGAGACGAAATGGTGAACGACGTTCCTCCACATTTATTAGTTGAAGAAGACAACGACAACGACGACGAAACCGCTATAAGTTTCTGGTCACTGAGTTGTAGCTTCTGCCATTCCAAAAAAAAAATCATAGAGATCAAAACTTTAAATTGCTTGAGCTTGAGGATCGAATGACTTTCCAATTTCAAGAGAGCCCTATGACAGTGGAATCAGTCGATAAAGGAAACCTTCGCATAAACAGAAAGAATTAGATCTCGAAAGAAGTTCGATACGTAACTTTTTAGTTCTTCAATTATAGCAACATTGAGTAAGATACAACAGTTCCAGTCCCACCGGTTTTCACTAGAGTGCCTTAAGTAG

mRNA sequence

ATGTCGGTTTCTTTAGAAGCTTTGGCAATGGCTGGGATTGATTCTAATGAGTGGGCTATGGATGCTAAAGAATGGGAACGAGACGAAATGGTGAACGACGTTCCTCCACATTTATTAGTTGAAGAAGACAACGACAACGACGACGAAACCGCTATAACAACATTGAGTAAGATACAACAGTTCCAGTCCCACCGGTTTTCACTAGAGTGCCTTAAGTAG

Coding sequence (CDS)

ATGTCGGTTTCTTTAGAAGCTTTGGCAATGGCTGGGATTGATTCTAATGAGTGGGCTATGGATGCTAAAGAATGGGAACGAGACGAAATGGTGAACGACGTTCCTCCACATTTATTAGTTGAAGAAGACAACGACAACGACGACGAAACCGCTATAACAACATTGAGTAAGATACAACAGTTCCAGTCCCACCGGTTTTCACTAGAGTGCCTTAAGTAG

Protein sequence

MSVSLEALAMAGIDSNEWAMDAKEWERDEMVNDVPPHLLVEEDNDNDDETAITTLSKIQQFQSHRFSLECLK
Homology
BLAST of Carg05815 vs. NCBI nr
Match: KAG7015382.1 (hypothetical protein SDJN02_23017, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 145.2 bits (365), Expect = 2.2e-31
Identity = 72/72 (100.00%), Postives = 72/72 (100.00%), Query Frame = 0

Query: 1  MSVSLEALAMAGIDSNEWAMDAKEWERDEMVNDVPPHLLVEEDNDNDDETAITTLSKIQQ 60
          MSVSLEALAMAGIDSNEWAMDAKEWERDEMVNDVPPHLLVEEDNDNDDETAITTLSKIQQ
Sbjct: 1  MSVSLEALAMAGIDSNEWAMDAKEWERDEMVNDVPPHLLVEEDNDNDDETAITTLSKIQQ 60

Query: 61 FQSHRFSLECLK 73
          FQSHRFSLECLK
Sbjct: 61 FQSHRFSLECLK 72

BLAST of Carg05815 vs. NCBI nr
Match: KAG7015383.1 (hypothetical protein SDJN02_23018, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 82.0 bits (201), Expect = 2.3e-12
Identity = 39/51 (76.47%), Postives = 47/51 (92.16%), Query Frame = 0

Query: 1  MSVSLEALAMAGIDSNEWAMDAKEWERDEMVNDVPPHLLVEEDNDNDDETA 52
          MSVSLEALAMAGI SNEWAMDA+EWER+E+ NDVPPHLL +ED+D+D+ T+
Sbjct: 1  MSVSLEALAMAGITSNEWAMDAEEWERNEIENDVPPHLLADEDDDDDNVTS 51

BLAST of Carg05815 vs. NCBI nr
Match: KAG6577295.1 (hypothetical protein SDJN03_24869, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 82.0 bits (201), Expect = 2.3e-12
Identity = 39/51 (76.47%), Postives = 47/51 (92.16%), Query Frame = 0

Query: 1  MSVSLEALAMAGIDSNEWAMDAKEWERDEMVNDVPPHLLVEEDNDNDDETA 52
          MSVSLEALAMAGI SNEWAMDA+EWER+E+ NDVPPHLL +ED+D+D+ T+
Sbjct: 1  MSVSLEALAMAGITSNEWAMDAEEWERNEIENDVPPHLLADEDDDDDNVTS 51

BLAST of Carg05815 vs. NCBI nr
Match: XP_022943015.1 (uncharacterized protein LOC111447880 [Cucurbita moschata])

HSP 1 Score: 80.5 bits (197), Expect = 6.6e-12
Identity = 37/48 (77.08%), Postives = 44/48 (91.67%), Query Frame = 0

Query: 1  MSVSLEALAMAGIDSNEWAMDAKEWERDEMVNDVPPHLLVEEDNDNDD 49
          MSVSLEALAMAGIDSNEWAMDA+EWER+EM  D+PPHLL +ED++ D+
Sbjct: 1  MSVSLEALAMAGIDSNEWAMDAEEWERNEMEKDIPPHLLADEDDEEDE 48

BLAST of Carg05815 vs. NCBI nr
Match: TYK16880.1 (Tetratricopeptide-like helical [Cucumis melo var. makuwa])

HSP 1 Score: 75.9 bits (185), Expect = 1.6e-10
Identity = 38/56 (67.86%), Postives = 47/56 (83.93%), Query Frame = 0

Query: 1  MSVSLEALAMAGIDSNEWAMDAKEWERDEMVNDVPPHLLVEEDNDNDDETAITTLS 57
          MSVSLEALAMAGIDSNEW MDA+EWER+E ++ VPPHLL +E++D D E   +T+S
Sbjct: 1  MSVSLEALAMAGIDSNEWGMDAQEWERNE-IDVVPPHLLADEEDDEDGEYVTSTIS 55

BLAST of Carg05815 vs. ExPASy TrEMBL
Match: A0A6J1FX98 (uncharacterized protein LOC111447880 OS=Cucurbita moschata OX=3662 GN=LOC111447880 PE=4 SV=1)

HSP 1 Score: 80.5 bits (197), Expect = 3.2e-12
Identity = 37/48 (77.08%), Postives = 44/48 (91.67%), Query Frame = 0

Query: 1  MSVSLEALAMAGIDSNEWAMDAKEWERDEMVNDVPPHLLVEEDNDNDD 49
          MSVSLEALAMAGIDSNEWAMDA+EWER+EM  D+PPHLL +ED++ D+
Sbjct: 1  MSVSLEALAMAGIDSNEWAMDAEEWERNEMEKDIPPHLLADEDDEEDE 48

BLAST of Carg05815 vs. ExPASy TrEMBL
Match: A0A0A0KWE7 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G026810 PE=4 SV=1)

HSP 1 Score: 76.6 bits (187), Expect = 4.6e-11
Identity = 38/54 (70.37%), Postives = 47/54 (87.04%), Query Frame = 0

Query: 1  MSVSLEALAMAGIDSNEWAMDAKEWERDEMVNDVPPHLLVEEDNDNDDETAITT 55
          MSVSLEALAMAGIDSNEWAMDA+EWER+E ++ VPPHLL +E++D D +  +TT
Sbjct: 1  MSVSLEALAMAGIDSNEWAMDAEEWERNE-IDVVPPHLLADEEDDEDGDEHVTT 53

BLAST of Carg05815 vs. ExPASy TrEMBL
Match: A0A5D3CZU0 (Tetratricopeptide-like helical OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold130G00110 PE=4 SV=1)

HSP 1 Score: 75.9 bits (185), Expect = 7.8e-11
Identity = 38/56 (67.86%), Postives = 47/56 (83.93%), Query Frame = 0

Query: 1  MSVSLEALAMAGIDSNEWAMDAKEWERDEMVNDVPPHLLVEEDNDNDDETAITTLS 57
          MSVSLEALAMAGIDSNEW MDA+EWER+E ++ VPPHLL +E++D D E   +T+S
Sbjct: 1  MSVSLEALAMAGIDSNEWGMDAQEWERNE-IDVVPPHLLADEEDDEDGEYVTSTIS 55

BLAST of Carg05815 vs. ExPASy TrEMBL
Match: A0A5A7TS68 (Tetratricopeptide-like helical OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold46G004640 PE=4 SV=1)

HSP 1 Score: 75.9 bits (185), Expect = 7.8e-11
Identity = 38/56 (67.86%), Postives = 47/56 (83.93%), Query Frame = 0

Query: 1  MSVSLEALAMAGIDSNEWAMDAKEWERDEMVNDVPPHLLVEEDNDNDDETAITTLS 57
          MSVSLEALAMAGIDSNEW MDA+EWER+E ++ VPPHLL +E++D D E   +T+S
Sbjct: 1  MSVSLEALAMAGIDSNEWGMDAQEWERNE-IDVVPPHLLADEEDDEDGEYVTSTIS 55

BLAST of Carg05815 vs. ExPASy TrEMBL
Match: A0A0A0KU90 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G026820 PE=4 SV=1)

HSP 1 Score: 65.5 bits (158), Expect = 1.1e-07
Identity = 34/50 (68.00%), Postives = 41/50 (82.00%), Query Frame = 0

Query: 1  MSVSLEALAMAGIDSNEWAMDAKEWERD--EMVND--VPPHLLVEEDNDN 47
          M VSLEALAMAGIDSNEWAMDA+EW+ +  +M ND  +PPHLL +ED +N
Sbjct: 1  MRVSLEALAMAGIDSNEWAMDAEEWKTNTHQMENDDIIPPHLLADEDEEN 50

BLAST of Carg05815 vs. TAIR 10
Match: AT2G22320.1 (unknown protein; Has 7 Blast hits to 7 proteins in 4 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 7; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 44.3 bits (103), Expect = 4.9e-05
Identity = 25/55 (45.45%), Postives = 32/55 (58.18%), Query Frame = 0

Query: 5  LEALAMAGIDSNEWAMDAKEWERDEMVNDVPPHLLVE-----------EDNDNDD 49
          +EALAMAG+D  EW +  +EWE  E V  VP HLL +           +DND+DD
Sbjct: 1  MEALAMAGVDYQEWGLSIEEWELQESV--VPLHLLADDFKEEEQEEDHQDNDDDD 53

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
KAG7015382.12.2e-31100.00hypothetical protein SDJN02_23017, partial [Cucurbita argyrosperma subsp. argyro... [more]
KAG7015383.12.3e-1276.47hypothetical protein SDJN02_23018, partial [Cucurbita argyrosperma subsp. argyro... [more]
KAG6577295.12.3e-1276.47hypothetical protein SDJN03_24869, partial [Cucurbita argyrosperma subsp. sorori... [more]
XP_022943015.16.6e-1277.08uncharacterized protein LOC111447880 [Cucurbita moschata][more]
TYK16880.11.6e-1067.86Tetratricopeptide-like helical [Cucumis melo var. makuwa][more]
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A6J1FX983.2e-1277.08uncharacterized protein LOC111447880 OS=Cucurbita moschata OX=3662 GN=LOC1114478... [more]
A0A0A0KWE74.6e-1170.37Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G026810 PE=4 SV=1[more]
A0A5D3CZU07.8e-1167.86Tetratricopeptide-like helical OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_s... [more]
A0A5A7TS687.8e-1167.86Tetratricopeptide-like helical OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_s... [more]
A0A0A0KU901.1e-0768.00Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G026820 PE=4 SV=1[more]
Match NameE-valueIdentityDescription
AT2G22320.14.9e-0545.45unknown protein; Has 7 Blast hits to 7 proteins in 4 species: Archae - 0; Bacter... [more]
InterPro
Analysis Name: InterPro Annotations of Silver-seed gourd (SMH-JMG-627) v2
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 67..72

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Carg05815-RACarg05815-RAmRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
cellular_component GO:0016021 integral component of membrane