Carg05743 (gene) Silver-seed gourd (SMH-JMG-627) v2

Overview
NameCarg05743
Typegene
OrganismCucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
DescriptionUnknown protein
LocationCarg_Chr16: 4170023 .. 4172979 (+)
RNA-Seq ExpressionCarg05743
SyntenyCarg05743
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptidethree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
CCAACGATTCTCGCCGACTATGATCCTGCTCGAGGTACCATGGTTATTCGTATCACGGCTACGCCATTTGGGAAGCAACTCAGGTGCTGGAAGCTACAATACACATTTATTTTGACTGGATCGTTGATCAGTAGATTTGAGCTTTTTTCTTTTCTTCTGCAGGAATATGTAAATGTTGAGGTCAAAGCGACGGTTAATAGCATCTATATCAGGTGTTTATGTTTCGTATTAGATTAGACTCGCGATCTTAAGTTTATTTTTGAAGATTTGAGTTCTTGGATTTTCGATTTTATTGTATTTGTTTTCAAGAATTATAAGCTAGGTTAGGTTGATTGTTGCATTGCCTGAAGCTTTGGGAGGTTCGACGGATGAATGAATCCATTACGAATCGCATGTTTTCTCAGAGGAATCTTAGTTACTTGATGATTAATCAGATTCAATGATTTGCGACATTACTGAAGATTCTTCCATTATATGTTATTGTGTGTATTTGTTGTAGTGGATGAATGCTACAAGATGGGAGATGCGGCGAAACCATTTGGTAGAACTCTTTGATTTCTTTTGCAGGCGGGACATACTGCTTAAGCCAGTCCGGAAGAGGCAGAACAAGTGATTCATTGATGCATTCAGATGATTCGCACAGGTACAAATTTTGATTATGAGCAAGTCGGATTATTGCCTATTATTCCAATATAATTGCTTAGAACATCTTGAGTTACATAGAATTATAGAGAGATGGTTGAAAGAGCACCATCCAACTGGTCTTTTGTTCATGGAAAAGCTAAAATGTGGGAACTAGAAGACTAATGAAACTTATATCTCTTTTATCCCTGAGAAGTCAAATGCAACTACAATGGGGGAGTTAGACTCTTTAGCCAAGAAGAACCCCTTTAGCCAAGAAGAACCCCTCTCCCCTTTCTTGTTCGCTTCTATAACTAATGTTTTCTGCAGCATTGTGGAAGTTTGTAAAGAAAAATGCATTATCGAAGGCTTTGAAATAGGTGGAGAGGGTCAAAGTTTCTACAGATGATACTATCTTGTTTTGCAAATATGAACCTGCTGAGCTAAAAATGTAATGACCCTAAGCCCACTGCTAACAAATATTGTCTTCTTTAGGCTTTTCCTTTCGGGCTTCCCTCAAAGTTTTTAAAACGCGTCTGGTAGGGAGAGGTTTCTACACCCTTATAAAGAATACTTCATTCTCCTCCCTAATGGATGTAAGATCTCACAATCCACCCCCGTTGGGGCCTAGTGTCATCGCTGACACTTTTTCTCCTCTCTAATCGATGTGAGACCTCACAATCCACCCTTCTTTAGGGCCCAGCATCTTCGCTTGCACTCATTCTCCTCTTCAATCGATGTGGGACCTCACAATCCACCCTCCTTTGGGGCCCAGCGTCCTCGTTGACTCTCTTGTCGGAAGTCTACAGTTGTAAGATAGAATCCCTCTCCAAGTCGTACCTGGGCTTGCCTCTTGGAGGAAAGCCGTCTGATGCATCCTTTTAGGATCCAGTTATTGATAGTCAGAAGTAAGCTTGTCAAGTTGGGAGGCTTTCCTTTTTCTAAGGGGAAAGATTCAGCTAAGTAAATGCAGTACTCACAAGCACCCCTATTTATTACCTCTCCATGTTTCGTATTGCGAGCAAGGCCAGCAAAAACCGAGACAAAATCATTAGAAATTTTCTATGAGAAGTAGCAAATAATGAAGGGGGTAGCTACCTAATGAATTTGGCAAAAGTCATTGCTCCTTTGTCCTTGGGATGTCTCAGCATTGGCAACGTTGGAAAGAAAAATACTCCTATTTCAGTGGCTTTGGCATTACACATAAAAAGGAACTGCTCTATGGAAAAGCATTATTAGAAGCAAATATGATCACAAGGGCCCTTCATAGCTAGATTCTTTCCAAACTAAATGGATTTGGAAGGAACACAGCCCCAAGAAAGTACATTTTTTTTGTTTGTTAGTTGGCTCGTTGTAGTCTCAACACCACGGACAGGGTTCAATGGACAAATTTCATGTGACAGCTCGAGTCCACCGCTAGTATATATTGTCCTATTTGGGCTTTCCTTCATAGTTTTTAAAACGTGTCTGCTAGAGAGAGGTTTCCAAACCCTTATAAAGAATGTTTTGTTCTCCTCTCGATCCCTATTTTGTTTCCCTCTCCAACCAATGTGGGATCGAGAGGAGAACAAAACATTCTTTGTAAGGATGTAGAAATCTCTCCATAGTAGACGCGTTTTAAAAACTTTGAGGGGAAGCCTTAAAGGAAAAACCCAAAGAGGACAATATTTGCTAGCGGTGGCCTTGGACTGTTACATCCCAACTGGGATTTATCAACAACAAATATTTGTCTGATGTGCAAAAAGGATTGAAGAAACTAGCAGCCACTTATTTCTCCACTATTTATTCACTTACAAAGCTTGGATTTTTATCCTAGAACGCCTAGACGTAGCTTGGTGTCTTCCAAGAAGTAGTTGAAGACGGCCTTTGAGAATTAATCTCCGGTGGATGGCTCAAAGGCAGGGGTTGAGTAATGTGGTCAACCGTGGATACATCTTTCTTTTGGAAAAACATCATTGATTATGCAACAAAAGAAAAAAAAAAAGCTATTGTTTGATACTTTGATTAATAATATAAATGAGTACCATTGTACCAGTTTGAACGTTACAGGTTTAAGCATTTACCCTCGACAAAGAGGTCGGAGGCTTCGACCCTCCAACTCCACACGTTGAATCAAAAAAGAATAGAAAGGAAGCAATTTGGCATGTCATTTGTCTTGGGCATTTGAATGCAGGGTAGCAAGGAATTGCTTGAGACACCTATTGTAGACGCAAGGTCGTTCCAAGTGAACCAAGTGACCCGACTTCGGTATGCTTTGAAACGTTGCATTGTCTCCGAGGTCCCTACATTTAGCATGATTCAAAACAGAACTTAGGATTCAATTTCAAATGAATCCT

mRNA sequence

CCAACGATTCTCGCCGACTATGATCCTGCTCGAGGTACCATGGTTATTCGTATCACGGCTACGCCATTTGGGAAGCAACTCAGGTGCTGGAAGCTACAATACACATTTATTTTGACTGGATCGTTGATCAGTAGATTTGAGCTTTTTTCTTTTCTTCTGCAGGAATATGTAAATGTTGAGGTCAAAGCGACGGTTAATAGCATCTATATCAGGTTGATTGTTGCATTGCCTGAAGCTTTGGGAGTGGATGAATGCTACAAGATGGGAGATGCGGCGAAACCATTTGGTAGAACTCTTTGATTTCTTTTGCAGGCGGGACATACTGCTTAAGCCAGTCCGGAAGAGGCAGAACAAGTGATTCATTGATGCATTCAGATGATTCGCACAGGTTTAAGCATTTACCCTCGACAAAGAGGTCGGAGGCTTCGACCCTCCAACTCCACACGTTGAATCAAAAAAGAATAGAAAGGAAGCAATTTGGCATGTCATTTGTCTTGGGCATTTGAATGCAGGGTAGCAAGGAATTGCTTGAGACACCTATTGTAGACGCAAGGTCGTTCCAAGTGAACCAAGTGACCCGACTTCGGTATGCTTTGAAACGTTGCATTGTCTCCGAGGTCCCTACATTTAGCATGATTCAAAACAGAACTTAGGATTCAATTTCAAATGAATCCT

Coding sequence (CDS)

CCAACGATTCTCGCCGACTATGATCCTGCTCGAGGTACCATGGTTATTCGTATCACGGCTACGCCATTTGGGAAGCAACTCAGGTGCTGGAAGCTACAATACACATTTATTTTGACTGGATCGTTGATCAGTAGATTTGAGCTTTTTTCTTTTCTTCTGCAGGAATATGTAAATGTTGAGGTCAAAGCGACGGTTAATAGCATCTATATCAGGTTGATTGTTGCATTGCCTGAAGCTTTGGGAGTGGATGAATGCTACAAGATGGGAGATGCGGCGAAACCATTTGGTAGAACTCTTTGA

Protein sequence

PTILADYDPARGTMVIRITATPFGKQLRCWKLQYTFILTGSLISRFELFSFLLQEYVNVEVKATVNSIYIRLIVALPEALGVDECYKMGDAAKPFGRTL
Homology
[Close]
BLAST of Carg05743 vs. NCBI nr
Match: KAG7015311.1 (hypothetical protein SDJN02_22946, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 200.7 bits (509), Expect = 6.0e-48
Identity = 99/99 (100.00%), Postives = 99/99 (100.00%), Query Frame = 0 

Query: 1   PTILADYDPARGTMVIRITATPFGKQLRCWKLQYTFILTGSLISRFELFSFLLQEYVNVE 60
           PTILADYDPARGTMVIRITATPFGKQLRCWKLQYTFILTGSLISRFELFSFLLQEYVNVE
Sbjct: 1   PTILADYDPARGTMVIRITATPFGKQLRCWKLQYTFILTGSLISRFELFSFLLQEYVNVE 60

Query: 61  VKATVNSIYIRLIVALPEALGVDECYKMGDAAKPFGRTL 100
           VKATVNSIYIRLIVALPEALGVDECYKMGDAAKPFGRTL
Sbjct: 61  VKATVNSIYIRLIVALPEALGVDECYKMGDAAKPFGRTL 99

The following BLAST results are available for this feature:
BLAST of Carg05743 vs. NCBI nr
Match NameE-valueIdentityDescription
KAG7015311.16.0e-48100.00hypothetical protein SDJN02_22946, partial [Cucurbita argyrosperma subsp. argyro... [more]
BLAST of Carg05743 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of Carg05743 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of Carg05743 vs. NCBI nr
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Carg05743-RACarg05743-RAmRNA