Carg05739 (gene) Silver-seed gourd (SMH-JMG-627) v2

Overview
NameCarg05739
Typegene
OrganismCucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
DescriptionSmall nuclear ribonucleoprotein Sm D2
LocationCarg_Chr16: 4155063 .. 4155569 (-)
RNA-Seq ExpressionCarg05739
SyntenyCarg05739
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
TGTACTTACTTTGAATCCTCTGCAGACTAGCAAAAATGAGGAAGAGGAGTTCAACACCGGTCCACTTTCAGTTCTCATGATGAGTGTTAAAAATAACACTCAGGTATGCTTTGTTTGTGCATGTTTAACAGTTGCGCCTTGTAATTCACAGGCAGAACTTTTCAGTTAAAAACTATTTTTATATGTGTTGGACCTTTTCGGCAGGTTCTTATTAATTGTCGCAACAATAAGAAGCTCTTGGGACGTGTACGGGCCTTCGACCGACATTGTAATATGGTTCTGGAAAATGTTAGAGAGATGTGGACTGAGGTTTGTTTTACTGATGTTTACTTACTCTTTTTCTTGCTTTGTATAGACTCAAGAGTCACTTATCATATGTACTATTACTATGACCAGGTACCAAAGACTGGGAAGGGCAAGAAAAAGGCTCAACCTGTTAACAAGGATAGATTCATCAGTAAGATGTTCCTGAGAGGAGACTCTGTCATTATTGTTCTTAGGAATCCC

mRNA sequence

TGTACTTACTTTGAATCCTCTGCAGACTAGCAAAAATGAGGAAGAGGAGTTCAACACCGGTCCACTTTCAGTTCTCATGATGAGTGTTAAAAATAACACTCAGGTTCTTATTAATTGTCGCAACAATAAGAAGCTCTTGGGACGTGTACGGGCCTTCGACCGACATTGTAATATGGTTCTGGAAAATGTTAGAGAGATGTGGACTGAGGTACCAAAGACTGGGAAGGGCAAGAAAAAGGCTCAACCTGTTAACAAGGATAGATTCATCAGTAAGATGTTCCTGAGAGGAGACTCTGTCATTATTGTTCTTAGGAATCCC

Coding sequence (CDS)

ATGATGAGTGTTAAAAATAACACTCAGGTTCTTATTAATTGTCGCAACAATAAGAAGCTCTTGGGACGTGTACGGGCCTTCGACCGACATTGTAATATGGTTCTGGAAAATGTTAGAGAGATGTGGACTGAGGTACCAAAGACTGGGAAGGGCAAGAAAAAGGCTCAACCTGTTAACAAGGATAGATTCATCAGTAAGATGTTCCTGAGAGGAGACTCTGTCATTATTGTTCTTAGGAATCCC

Protein sequence

MMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTEVPKTGKGKKKAQPVNKDRFISKMFLRGDSVIIVLRNP
Homology
[Close]
BLAST of Carg05739 vs. NCBI nr
Match: XP_014494508.1 (small nuclear ribonucleoprotein Sm D2 [Vigna radiata var. radiata])

HSP 1 Score: 166.8 bits (421), Expect = 7.9e-38
Identity = 81/81 (100.00%), Postives = 81/81 (100.00%), Query Frame = 0 

Query: 1   MMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTEVPKTGKGKKKAQPVNK 60
           MMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTEVPKTGKGKKKAQPVNK
Sbjct: 28  MMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTEVPKTGKGKKKAQPVNK 87

Query: 61  DRFISKMFLRGDSVIIVLRNP 82
           DRFISKMFLRGDSVIIVLRNP
Sbjct: 88  DRFISKMFLRGDSVIIVLRNP 108

[Close]
BLAST of Carg05739 vs. NCBI nr
Match: XP_030543269.1 (small nuclear ribonucleoprotein Sm D2-like isoform X1 [Rhodamnia argentea] >XP_030543270.1 small nuclear ribonucleoprotein Sm D2-like isoform X1 [Rhodamnia argentea] >XP_030543271.1 small nuclear ribonucleoprotein Sm D2-like isoform X1 [Rhodamnia argentea])

HSP 1 Score: 166.8 bits (421), Expect = 7.9e-38
Identity = 81/81 (100.00%), Postives = 81/81 (100.00%), Query Frame = 0 

Query: 1   MMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTEVPKTGKGKKKAQPVNK 60
           MMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTEVPKTGKGKKKAQPVNK
Sbjct: 28  MMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTEVPKTGKGKKKAQPVNK 87

Query: 61  DRFISKMFLRGDSVIIVLRNP 82
           DRFISKMFLRGDSVIIVLRNP
Sbjct: 88  DRFISKMFLRGDSVIIVLRNP 108

[Close]
BLAST of Carg05739 vs. NCBI nr
Match: XP_003630987.1 (small nuclear ribonucleoprotein Sm D2 [Medicago truncatula] >XP_004503332.1 small nuclear ribonucleoprotein Sm D2-like [Cicer arietinum] >XP_004503333.1 small nuclear ribonucleoprotein Sm D2-like [Cicer arietinum] >AET05463.1 small nuclear ribonucleoprotein [Medicago truncatula] >AFK41261.1 unknown [Medicago truncatula] >RHN43829.1 putative small nuclear ribonucleoprotein Sm D2 [Medicago truncatula])

HSP 1 Score: 166.8 bits (421), Expect = 7.9e-38
Identity = 81/81 (100.00%), Postives = 81/81 (100.00%), Query Frame = 0 

Query: 1   MMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTEVPKTGKGKKKAQPVNK 60
           MMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTEVPKTGKGKKKAQPVNK
Sbjct: 27  MMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTEVPKTGKGKKKAQPVNK 86

Query: 61  DRFISKMFLRGDSVIIVLRNP 82
           DRFISKMFLRGDSVIIVLRNP
Sbjct: 87  DRFISKMFLRGDSVIIVLRNP 107

[Close]
BLAST of Carg05739 vs. NCBI nr
Match: KAF3952231.1 (hypothetical protein CMV_022197 [Castanea mollissima])

HSP 1 Score: 166.8 bits (421), Expect = 7.9e-38
Identity = 81/81 (100.00%), Postives = 81/81 (100.00%), Query Frame = 0 

Query: 1   MMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTEVPKTGKGKKKAQPVNK 60
           MMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTEVPKTGKGKKKAQPVNK
Sbjct: 94  MMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTEVPKTGKGKKKAQPVNK 153

Query: 61  DRFISKMFLRGDSVIIVLRNP 82
           DRFISKMFLRGDSVIIVLRNP
Sbjct: 154 DRFISKMFLRGDSVIIVLRNP 174

[Close]
BLAST of Carg05739 vs. NCBI nr
Match: XP_020538459.1 (small nuclear ribonucleoprotein Sm D2 isoform X4 [Jatropha curcas])

HSP 1 Score: 166.8 bits (421), Expect = 7.9e-38
Identity = 81/81 (100.00%), Postives = 81/81 (100.00%), Query Frame = 0 

Query: 1   MMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTEVPKTGKGKKKAQPVNK 60
           MMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTEVPKTGKGKKKAQPVNK
Sbjct: 27  MMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTEVPKTGKGKKKAQPVNK 86

Query: 61  DRFISKMFLRGDSVIIVLRNP 82
           DRFISKMFLRGDSVIIVLRNP
Sbjct: 87  DRFISKMFLRGDSVIIVLRNP 107

[Close]
BLAST of Carg05739 vs. ExPASy Swiss-Prot
Match: Q3SZF8 (Small nuclear ribonucleoprotein Sm D2 OS=Bos taurus OX=9913 GN=SNRPD2 PE=3 SV=1)

HSP 1 Score: 155.2 bits (391), Expect = 3.1e-37
Identity = 72/79 (91.14%), Postives = 79/79 (100.00%), Query Frame = 0 

Query: 3   SVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTEVPKTGKGKKKAQPVNKDR 62
           SVKNNTQVLINCRNNKKLLGRV+AFDRHCNMVLENV+EMWTEVPK+GKGKKK++PVNKDR
Sbjct: 35  SVKNNTQVLINCRNNKKLLGRVKAFDRHCNMVLENVKEMWTEVPKSGKGKKKSKPVNKDR 94

Query: 63  FISKMFLRGDSVIIVLRNP 82
           +ISKMFLRGDSVI+VLRNP
Sbjct: 95  YISKMFLRGDSVIVVLRNP 113

[Close]
BLAST of Carg05739 vs. ExPASy Swiss-Prot
Match: P62316 (Small nuclear ribonucleoprotein Sm D2 OS=Homo sapiens OX=9606 GN=SNRPD2 PE=1 SV=1)

HSP 1 Score: 155.2 bits (391), Expect = 3.1e-37
Identity = 72/79 (91.14%), Postives = 79/79 (100.00%), Query Frame = 0 

Query: 3   SVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTEVPKTGKGKKKAQPVNKDR 62
           SVKNNTQVLINCRNNKKLLGRV+AFDRHCNMVLENV+EMWTEVPK+GKGKKK++PVNKDR
Sbjct: 35  SVKNNTQVLINCRNNKKLLGRVKAFDRHCNMVLENVKEMWTEVPKSGKGKKKSKPVNKDR 94

Query: 63  FISKMFLRGDSVIIVLRNP 82
           +ISKMFLRGDSVI+VLRNP
Sbjct: 95  YISKMFLRGDSVIVVLRNP 113

[Close]
BLAST of Carg05739 vs. ExPASy Swiss-Prot
Match: P62317 (Small nuclear ribonucleoprotein Sm D2 OS=Mus musculus OX=10090 GN=Snrpd2 PE=1 SV=1)

HSP 1 Score: 155.2 bits (391), Expect = 3.1e-37
Identity = 72/79 (91.14%), Postives = 79/79 (100.00%), Query Frame = 0 

Query: 3   SVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTEVPKTGKGKKKAQPVNKDR 62
           SVKNNTQVLINCRNNKKLLGRV+AFDRHCNMVLENV+EMWTEVPK+GKGKKK++PVNKDR
Sbjct: 35  SVKNNTQVLINCRNNKKLLGRVKAFDRHCNMVLENVKEMWTEVPKSGKGKKKSKPVNKDR 94

Query: 63  FISKMFLRGDSVIIVLRNP 82
           +ISKMFLRGDSVI+VLRNP
Sbjct: 95  YISKMFLRGDSVIVVLRNP 113

[Close]
BLAST of Carg05739 vs. ExPASy Swiss-Prot
Match: Q9VI10 (Probable small nuclear ribonucleoprotein Sm D2 OS=Drosophila melanogaster OX=7227 GN=SmD2 PE=1 SV=1)

HSP 1 Score: 154.8 bits (390), Expect = 4.1e-37
Identity = 72/79 (91.14%), Postives = 78/79 (98.73%), Query Frame = 0 

Query: 3   SVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTEVPKTGKGKKKAQPVNKDR 62
           SVKNNTQVLINCRNNKKLLGRV+AFDRHCNMVLENV+EMWTE+P+TGKGKKK +PVNKDR
Sbjct: 34  SVKNNTQVLINCRNNKKLLGRVKAFDRHCNMVLENVKEMWTELPRTGKGKKKVKPVNKDR 93

Query: 63  FISKMFLRGDSVIIVLRNP 82
           FISKMFLRGDSVI+VLRNP
Sbjct: 94  FISKMFLRGDSVILVLRNP 112

[Close]
BLAST of Carg05739 vs. ExPASy Swiss-Prot
Match: Q54NC5 (Probable small nuclear ribonucleoprotein Sm D2 OS=Dictyostelium discoideum OX=44689 GN=snrpd2 PE=3 SV=1)

HSP 1 Score: 149.1 bits (375), Expect = 2.2e-35
Identity = 71/81 (87.65%), Postives = 77/81 (95.06%), Query Frame = 0 

Query: 1   MMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTEVPKTGKGKKKAQPVNK 60
           M SV NNTQVLIN RNNKKLLGRVRAFDRHCNMVLENV+E+WTEVPKT KGKKKA+P+NK
Sbjct: 24  MDSVNNNTQVLINVRNNKKLLGRVRAFDRHCNMVLENVKEIWTEVPKTAKGKKKAKPINK 83

Query: 61  DRFISKMFLRGDSVIIVLRNP 82
           DRFISKMFLRGDSVI+VL+NP
Sbjct: 84  DRFISKMFLRGDSVILVLKNP 104

[Close]
BLAST of Carg05739 vs. ExPASy TrEMBL
Match: A0A5N5KBI5 (Small nuclear ribonucleoprotein Sm D2 OS=Salix brachista OX=2182728 GN=DKX38_003252 PE=3 SV=1)

HSP 1 Score: 166.8 bits (421), Expect = 3.8e-38
Identity = 81/81 (100.00%), Postives = 81/81 (100.00%), Query Frame = 0 

Query: 1   MMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTEVPKTGKGKKKAQPVNK 60
           MMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTEVPKTGKGKKKAQPVNK
Sbjct: 27  MMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTEVPKTGKGKKKAQPVNK 86

Query: 61  DRFISKMFLRGDSVIIVLRNP 82
           DRFISKMFLRGDSVIIVLRNP
Sbjct: 87  DRFISKMFLRGDSVIIVLRNP 107

[Close]
BLAST of Carg05739 vs. ExPASy TrEMBL
Match: A0A6A4QKF7 (Small nuclear ribonucleoprotein Sm D2 OS=Lupinus albus OX=3870 GN=Lal_00016389 PE=3 SV=1)

HSP 1 Score: 166.8 bits (421), Expect = 3.8e-38
Identity = 81/81 (100.00%), Postives = 81/81 (100.00%), Query Frame = 0 

Query: 1   MMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTEVPKTGKGKKKAQPVNK 60
           MMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTEVPKTGKGKKKAQPVNK
Sbjct: 27  MMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTEVPKTGKGKKKAQPVNK 86

Query: 61  DRFISKMFLRGDSVIIVLRNP 82
           DRFISKMFLRGDSVIIVLRNP
Sbjct: 87  DRFISKMFLRGDSVIIVLRNP 107

[Close]
BLAST of Carg05739 vs. ExPASy TrEMBL
Match: A0A0B2Q033 (Small nuclear ribonucleoprotein Sm D2 OS=Glycine soja OX=3848 GN=D0Y65_054695 PE=3 SV=1)

HSP 1 Score: 166.8 bits (421), Expect = 3.8e-38
Identity = 81/81 (100.00%), Postives = 81/81 (100.00%), Query Frame = 0 

Query: 1   MMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTEVPKTGKGKKKAQPVNK 60
           MMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTEVPKTGKGKKKAQPVNK
Sbjct: 23  MMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTEVPKTGKGKKKAQPVNK 82

Query: 61  DRFISKMFLRGDSVIIVLRNP 82
           DRFISKMFLRGDSVIIVLRNP
Sbjct: 83  DRFISKMFLRGDSVIIVLRNP 103

[Close]
BLAST of Carg05739 vs. ExPASy TrEMBL
Match: A0A1S3BTT5 (Small nuclear ribonucleoprotein Sm D2 OS=Cucumis melo OX=3656 GN=LOC103493191 PE=3 SV=1)

HSP 1 Score: 166.8 bits (421), Expect = 3.8e-38
Identity = 81/81 (100.00%), Postives = 81/81 (100.00%), Query Frame = 0 

Query: 1   MMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTEVPKTGKGKKKAQPVNK 60
           MMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTEVPKTGKGKKKAQPVNK
Sbjct: 26  MMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTEVPKTGKGKKKAQPVNK 85

Query: 61  DRFISKMFLRGDSVIIVLRNP 82
           DRFISKMFLRGDSVIIVLRNP
Sbjct: 86  DRFISKMFLRGDSVIIVLRNP 106

[Close]
BLAST of Carg05739 vs. ExPASy TrEMBL
Match: G7LBH6 (Small nuclear ribonucleoprotein Sm D2 OS=Medicago truncatula OX=3880 GN=11426500 PE=2 SV=1)

HSP 1 Score: 166.8 bits (421), Expect = 3.8e-38
Identity = 81/81 (100.00%), Postives = 81/81 (100.00%), Query Frame = 0 

Query: 1   MMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTEVPKTGKGKKKAQPVNK 60
           MMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTEVPKTGKGKKKAQPVNK
Sbjct: 27  MMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTEVPKTGKGKKKAQPVNK 86

Query: 61  DRFISKMFLRGDSVIIVLRNP 82
           DRFISKMFLRGDSVIIVLRNP
Sbjct: 87  DRFISKMFLRGDSVIIVLRNP 107

[Close]
BLAST of Carg05739 vs. TAIR 10
Match: AT2G47640.1 (Small nuclear ribonucleoprotein family protein )

HSP 1 Score: 161.8 bits (408), Expect = 2.4e-40
Identity = 78/81 (96.30%), Postives = 80/81 (98.77%), Query Frame = 0 

Query: 1   MMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTEVPKTGKGKKKAQPVNK 60
           MMSVKNNTQVLINCRNN+KLLGRVRAFDRHCNMVLENVREMWTEVPKTGKGKKKA PVN+
Sbjct: 28  MMSVKNNTQVLINCRNNRKLLGRVRAFDRHCNMVLENVREMWTEVPKTGKGKKKALPVNR 87

Query: 61  DRFISKMFLRGDSVIIVLRNP 82
           DRFISKMFLRGDSVIIVLRNP
Sbjct: 88  DRFISKMFLRGDSVIIVLRNP 108

[Close]
BLAST of Carg05739 vs. TAIR 10
Match: AT2G47640.2 (Small nuclear ribonucleoprotein family protein )

HSP 1 Score: 161.8 bits (408), Expect = 2.4e-40
Identity = 78/81 (96.30%), Postives = 80/81 (98.77%), Query Frame = 0 

Query: 1   MMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTEVPKTGKGKKKAQPVNK 60
           MMSVKNNTQVLINCRNN+KLLGRVRAFDRHCNMVLENVREMWTEVPKTGKGKKKA PVN+
Sbjct: 27  MMSVKNNTQVLINCRNNRKLLGRVRAFDRHCNMVLENVREMWTEVPKTGKGKKKALPVNR 86

Query: 61  DRFISKMFLRGDSVIIVLRNP 82
           DRFISKMFLRGDSVIIVLRNP
Sbjct: 87  DRFISKMFLRGDSVIIVLRNP 107

[Close]
BLAST of Carg05739 vs. TAIR 10
Match: AT2G47640.3 (Small nuclear ribonucleoprotein family protein )

HSP 1 Score: 161.8 bits (408), Expect = 2.4e-40
Identity = 78/81 (96.30%), Postives = 80/81 (98.77%), Query Frame = 0 

Query: 1   MMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTEVPKTGKGKKKAQPVNK 60
           MMSVKNNTQVLINCRNN+KLLGRVRAFDRHCNMVLENVREMWTEVPKTGKGKKKA PVN+
Sbjct: 27  MMSVKNNTQVLINCRNNRKLLGRVRAFDRHCNMVLENVREMWTEVPKTGKGKKKALPVNR 86

Query: 61  DRFISKMFLRGDSVIIVLRNP 82
           DRFISKMFLRGDSVIIVLRNP
Sbjct: 87  DRFISKMFLRGDSVIIVLRNP 107

[Close]
BLAST of Carg05739 vs. TAIR 10
Match: AT2G47640.4 (Small nuclear ribonucleoprotein family protein )

HSP 1 Score: 161.8 bits (408), Expect = 2.4e-40
Identity = 78/81 (96.30%), Postives = 80/81 (98.77%), Query Frame = 0 

Query: 1   MMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTEVPKTGKGKKKAQPVNK 60
           MMSVKNNTQVLINCRNN+KLLGRVRAFDRHCNMVLENVREMWTEVPKTGKGKKKA PVN+
Sbjct: 28  MMSVKNNTQVLINCRNNRKLLGRVRAFDRHCNMVLENVREMWTEVPKTGKGKKKALPVNR 87

Query: 61  DRFISKMFLRGDSVIIVLRNP 82
           DRFISKMFLRGDSVIIVLRNP
Sbjct: 88  DRFISKMFLRGDSVIIVLRNP 108

[Close]
BLAST of Carg05739 vs. TAIR 10
Match: AT3G62840.1 (Small nuclear ribonucleoprotein family protein )

HSP 1 Score: 161.8 bits (408), Expect = 2.4e-40
Identity = 78/81 (96.30%), Postives = 80/81 (98.77%), Query Frame = 0 

Query: 1   MMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTEVPKTGKGKKKAQPVNK 60
           MMSVKNNTQVLINCRNN+KLLGRVRAFDRHCNMVLENVREMWTEVPKTGKGKKKA PVN+
Sbjct: 28  MMSVKNNTQVLINCRNNRKLLGRVRAFDRHCNMVLENVREMWTEVPKTGKGKKKALPVNR 87

Query: 61  DRFISKMFLRGDSVIIVLRNP 82
           DRFISKMFLRGDSVIIVLRNP
Sbjct: 88  DRFISKMFLRGDSVIIVLRNP 108

The following BLAST results are available for this feature:
BLAST of Carg05739 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_014494508.17.9e-38100.00small nuclear ribonucleoprotein Sm D2 [Vigna radiata var. radiata][more]
XP_030543269.17.9e-38100.00small nuclear ribonucleoprotein Sm D2-like isoform X1 [Rhodamnia argentea] >XP_0... [more]
XP_003630987.17.9e-38100.00small nuclear ribonucleoprotein Sm D2 [Medicago truncatula] >XP_004503332.1 smal... [more]
KAF3952231.17.9e-38100.00hypothetical protein CMV_022197 [Castanea mollissima][more]
XP_020538459.17.9e-38100.00small nuclear ribonucleoprotein Sm D2 isoform X4 [Jatropha curcas][more]
BLAST of Carg05739 vs. ExPASy Swiss-Prot
Match NameE-valueIdentityDescription
Q3SZF83.1e-3791.14Small nuclear ribonucleoprotein Sm D2 OS=Bos taurus OX=9913 GN=SNRPD2 PE=3 SV=1[more]
P623163.1e-3791.14Small nuclear ribonucleoprotein Sm D2 OS=Homo sapiens OX=9606 GN=SNRPD2 PE=1 SV=... [more]
P623173.1e-3791.14Small nuclear ribonucleoprotein Sm D2 OS=Mus musculus OX=10090 GN=Snrpd2 PE=1 SV... [more]
Q9VI104.1e-3791.14Probable small nuclear ribonucleoprotein Sm D2 OS=Drosophila melanogaster OX=722... [more]
Q54NC52.2e-3587.65Probable small nuclear ribonucleoprotein Sm D2 OS=Dictyostelium discoideum OX=44... [more]
BLAST of Carg05739 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A5N5KBI53.8e-38100.00Small nuclear ribonucleoprotein Sm D2 OS=Salix brachista OX=2182728 GN=DKX38_003... [more]
A0A6A4QKF73.8e-38100.00Small nuclear ribonucleoprotein Sm D2 OS=Lupinus albus OX=3870 GN=Lal_00016389 P... [more]
A0A0B2Q0333.8e-38100.00Small nuclear ribonucleoprotein Sm D2 OS=Glycine soja OX=3848 GN=D0Y65_054695 PE... [more]
A0A1S3BTT53.8e-38100.00Small nuclear ribonucleoprotein Sm D2 OS=Cucumis melo OX=3656 GN=LOC103493191 PE... [more]
G7LBH63.8e-38100.00Small nuclear ribonucleoprotein Sm D2 OS=Medicago truncatula OX=3880 GN=11426500... [more]
BLAST of Carg05739 vs. TAIR 10
Match NameE-valueIdentityDescription
AT2G47640.12.4e-4096.30Small nuclear ribonucleoprotein family protein [more]
AT2G47640.22.4e-4096.30Small nuclear ribonucleoprotein family protein [more]
AT2G47640.32.4e-4096.30Small nuclear ribonucleoprotein family protein [more]
AT2G47640.42.4e-4096.30Small nuclear ribonucleoprotein family protein [more]
AT3G62840.12.4e-4096.30Small nuclear ribonucleoprotein family protein [more]
InterPro
Analysis Name: InterPro Annotations of Silver-seed gourd (SMH-JMG-627) v2
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR001163LSM domain, eukaryotic/archaea-typeSMARTSM00651Sm3coord: 1..79
e-value: 6.6E-18
score: 75.5
IPR001163LSM domain, eukaryotic/archaea-typePFAMPF01423LSMcoord: 4..77
e-value: 2.6E-19
score: 68.7
NoneNo IPR availableGENE3D2.30.30.100coord: 1..81
e-value: 2.4E-36
score: 125.3
NoneNo IPR availablePANTHERPTHR12777:SF1SMALL NUCLEAR RIBONUCLEOPROTEIN SM D2coord: 1..81
IPR027248Small nuclear ribonucleoprotein Sm D2PANTHERPTHR12777SMALL NUCLEAR RIBONUCLEOPROTEIN SM D2coord: 1..81
IPR027248Small nuclear ribonucleoprotein Sm D2CDDcd01720Sm_D2coord: 1..81
e-value: 1.83313E-53
score: 159.033
IPR010920LSM domain superfamilySUPERFAMILY50182Sm-like ribonucleoproteinscoord: 2..79

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Carg05739-RACarg05739-RAmRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006397 mRNA processing
biological_process GO:0008380 RNA splicing
cellular_component GO:0016021 integral component of membrane
cellular_component GO:0030532 small nuclear ribonucleoprotein complex