Carg05704 (gene) Silver-seed gourd (SMH-JMG-627) v2

Overview


Name	Carg05704
Type	gene
Organism	Cucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
Description	Ubiquitin-conjugating enzyme E2
Location	Carg_Chr16: 3963955 .. 3965293 (+)
RNA-Seq Expression	Carg05704
Synteny	Carg05704

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCGTCCAAGAGAATATTGAAGGAGCTTAAAGACTTGCAGAGAGACCCACCAACTTCTTGTAGTGCAGGTGAATTAGGGATACTTTATGATCACACCATGTTTAATTTTTGTTTCTACTTTTCCTTTTATATAACCTTTTCGTGTTAAATACTCGTAAGATTGAGCTTGGTTCATTCATGTTTGATATGGTAATCGTGAGATCCCGCATCGGTTAGAGAGGGGAACGAAGCATTCCTTATAAGAGTATGGAAACCTCTTCTAAGCAGACGTGTTTTAAAACCGTGAGGCTAATGACGATACGTTACGGGCTAAAGCGAACAATATTTGCTAGTGTTGGCCTCGGGCTGTTACAAATGGTATCAGAGCCCATCACTGGGCGGTGTGCCAGCGAGGACACTGGACCTCTAATGGAGTGTTTTGTGAGATTCCACATCGGTTGGAGAGAGGAACGAAGTATTCCTTACAAGGGTGTGGAAACTTCTCTATAGCATACAGGCTTTAAAACTGTGAGGCGACGATGCGTAACGAGCCAAAGCGGACAATATCTGAATATAAGTTTAGTTCCATTTCATAATTATCTTGTTCTTGGTTTTTGAAAATTGGGTTTGATTTTCACCAATTTCTTTACAATAACTTTTATTTTTTTAACGAAATTTTTGAATATCTAAGGATGTTCAAACGACTCGATGAACTTATTAGGGTTCGATTAGTTCAAATAAATGAAAGCTTTATGCGTTAGGTTGGTTCATGGATTTGAGTTTATGCTCGTGTATTTTTCAGGTCCTGTAGCTGAGGACATGTTTCATTGGCAAGCAACTATTATTGGTCCAAATGACAGTCCCTACGCCGGTGGAGTTTTTCTCGTCTCCATTCATTTTCCTCCCGATTATCCTTTCAAGCCTCCTAAGGTTGCCTTTAGAACACGAGTGTTTCATCCAAACATAAATAGTAACGGCAACATATGCTTGGATATCCTCAAGGAACAATGGAGTCCCGCACTAACGATATCGAAAGTAAGTTCATTTCAACTTTAAATCTTCATACCCATAAACAAAGGAAAGATCGTTCAAAACCCGTTTAGTTAAAGAGCTTCATGAGTCCACTTGTCGACCAGATGAACACGTTAACAATTCGATTCGTATCGATACTCAAGAACGAAGGTTGAGTATACTAAAGATCTCGAATTTTGCAGGTTTTGCTATCAATATGCTCACTATTAACCGATCCAAACCCAGATGATCCACTGGTTCCAGAGATTGCTCACATGTGCAAGACTGATAAAGTCAAATATGAATCCACTGCTAGGAGCTGGACCCACAAATATGCAATGGGTTAA

mRNA sequence

ATGGCGTCCAAGAGAATATTGAAGGAGCTTAAAGACTTGCAGAGAGACCCACCAACTTCTTGTAGTGCAGGTCCTGTAGCTGAGGACATGTTTCATTGGCAAGCAACTATTATTGGTCCAAATGACAGTCCCTACGCCGGTGGAGTTTTTCTCGTCTCCATTCATTTTCCTCCCGATTATCCTTTCAAGCCTCCTAAGGTTGCCTTTAGAACACGAGTGTTTCATCCAAACATAAATAGTAACGGCAACATATGCTTGGATATCCTCAAGGAACAATGGAGTCCCGCACTAACGATATCGAAAGTTTTGCTATCAATATGCTCACTATTAACCGATCCAAACCCAGATGATCCACTGGTTCCAGAGATTGCTCACATGTGCAAGACTGATAAAGTCAAATATGAATCCACTGCTAGGAGCTGGACCCACAAATATGCAATGGGTTAA

Coding sequence (CDS)

ATGGCGTCCAAGAGAATATTGAAGGAGCTTAAAGACTTGCAGAGAGACCCACCAACTTCTTGTAGTGCAGGTCCTGTAGCTGAGGACATGTTTCATTGGCAAGCAACTATTATTGGTCCAAATGACAGTCCCTACGCCGGTGGAGTTTTTCTCGTCTCCATTCATTTTCCTCCCGATTATCCTTTCAAGCCTCCTAAGGTTGCCTTTAGAACACGAGTGTTTCATCCAAACATAAATAGTAACGGCAACATATGCTTGGATATCCTCAAGGAACAATGGAGTCCCGCACTAACGATATCGAAAGTTTTGCTATCAATATGCTCACTATTAACCGATCCAAACCCAGATGATCCACTGGTTCCAGAGATTGCTCACATGTGCAAGACTGATAAAGTCAAATATGAATCCACTGCTAGGAGCTGGACCCACAAATATGCAATGGGTTAA

Protein sequence

MASKRILKELKDLQRDPPTSCSAGPVAEDMFHWQATIIGPNDSPYAGGVFLVSIHFPPDYPFKPPKVAFRTRVFHPNINSNGNICLDILKEQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMCKTDKVKYESTARSWTHKYAMG

Homology

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BLAST of Carg05704 vs. NCBI nr
Match: XP_022928354.1 (ubiquitin-conjugating enzyme E2-17 kDa-like [Cucurbita moschata] >XP_022928355.1 ubiquitin-conjugating enzyme E2-17 kDa-like [Cucurbita moschata] >XP_022989069.1 ubiquitin-conjugating enzyme E2-17 kDa-like [Cucurbita maxima] >XP_023529809.1 ubiquitin-conjugating enzyme E2-17 kDa-like [Cucurbita pepo subsp. pepo] >KAG7015272.1 hypothetical protein SDJN02_22907, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 316.2 bits (809), Expect = 1.5e-82
Identity = 148/148 (100.00%), Postives = 148/148 (100.00%), Query Frame = 0


Query: 1   MASKRILKELKDLQRDPPTSCSAGPVAEDMFHWQATIIGPNDSPYAGGVFLVSIHFPPDY 60
           MASKRILKELKDLQRDPPTSCSAGPVAEDMFHWQATIIGPNDSPYAGGVFLVSIHFPPDY
Sbjct: 1   MASKRILKELKDLQRDPPTSCSAGPVAEDMFHWQATIIGPNDSPYAGGVFLVSIHFPPDY 60

Query: 61  PFKPPKVAFRTRVFHPNINSNGNICLDILKEQWSPALTISKVLLSICSLLTDPNPDDPLV 120
           PFKPPKVAFRTRVFHPNINSNGNICLDILKEQWSPALTISKVLLSICSLLTDPNPDDPLV
Sbjct: 61  PFKPPKVAFRTRVFHPNINSNGNICLDILKEQWSPALTISKVLLSICSLLTDPNPDDPLV 120

Query: 121 PEIAHMCKTDKVKYESTARSWTHKYAMG 149
           PEIAHMCKTDKVKYESTARSWTHKYAMG
Sbjct: 121 PEIAHMCKTDKVKYESTARSWTHKYAMG 148

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BLAST of Carg05704 vs. NCBI nr
Match: XP_021603043.1 (ubiquitin-conjugating enzyme E2 10-like isoform X2 [Manihot esculenta] >KAG8655821.1 hypothetical protein MANES_04G076160v8 [Manihot esculenta])

HSP 1 Score: 310.5 bits (794), Expect = 8.0e-81
Identity = 144/148 (97.30%), Postives = 147/148 (99.32%), Query Frame = 0


Query: 1   MASKRILKELKDLQRDPPTSCSAGPVAEDMFHWQATIIGPNDSPYAGGVFLVSIHFPPDY 60
           MASKRILKELKDLQRDPPTSCSAGPVAEDMFHWQATIIGPNDSPYAGGVFLV+IHFPPDY
Sbjct: 1   MASKRILKELKDLQRDPPTSCSAGPVAEDMFHWQATIIGPNDSPYAGGVFLVTIHFPPDY 60

Query: 61  PFKPPKVAFRTRVFHPNINSNGNICLDILKEQWSPALTISKVLLSICSLLTDPNPDDPLV 120
           PFKPPKVAFRT+VFHPNINSNGNICLDILKEQWSPALTISKVLLSICSLLTDPNPDDPLV
Sbjct: 61  PFKPPKVAFRTKVFHPNINSNGNICLDILKEQWSPALTISKVLLSICSLLTDPNPDDPLV 120

Query: 121 PEIAHMCKTDKVKYESTARSWTHKYAMG 149
           PEIAHMCKTDK+KYESTARSWT KYAMG
Sbjct: 121 PEIAHMCKTDKIKYESTARSWTQKYAMG 148

[Close]

BLAST of Carg05704 vs. NCBI nr
Match: XP_004144844.1 (ubiquitin-conjugating enzyme E2 28 [Cucumis sativus] >KGN43247.1 hypothetical protein Csa_020408 [Cucumis sativus])

HSP 1 Score: 309.7 bits (792), Expect = 1.4e-80
Identity = 143/148 (96.62%), Postives = 148/148 (100.00%), Query Frame = 0


Query: 1   MASKRILKELKDLQRDPPTSCSAGPVAEDMFHWQATIIGPNDSPYAGGVFLVSIHFPPDY 60
           MASKRILKELKDLQRDPPTSCSAGPVAEDMFHWQATIIGP+DSPY+GGVFLV+IHFPPDY
Sbjct: 1   MASKRILKELKDLQRDPPTSCSAGPVAEDMFHWQATIIGPSDSPYSGGVFLVTIHFPPDY 60

Query: 61  PFKPPKVAFRTRVFHPNINSNGNICLDILKEQWSPALTISKVLLSICSLLTDPNPDDPLV 120
           PFKPPKVAFRT+VFHPNINSNGNICLDILKEQWSPALTISKVLLSICSLLTDPNPDDPLV
Sbjct: 61  PFKPPKVAFRTKVFHPNINSNGNICLDILKEQWSPALTISKVLLSICSLLTDPNPDDPLV 120

Query: 121 PEIAHMCKTDKVKYESTARSWTHKYAMG 149
           PEIAHMCKTDK+KYESTARSWTHKYAMG
Sbjct: 121 PEIAHMCKTDKLKYESTARSWTHKYAMG 148

[Close]

BLAST of Carg05704 vs. NCBI nr
Match: XP_007201846.1 (ubiquitin-conjugating enzyme E2 28 isoform X2 [Prunus persica])

HSP 1 Score: 309.7 bits (792), Expect = 1.4e-80
Identity = 144/148 (97.30%), Postives = 147/148 (99.32%), Query Frame = 0


Query: 1   MASKRILKELKDLQRDPPTSCSAGPVAEDMFHWQATIIGPNDSPYAGGVFLVSIHFPPDY 60
           MASKRILKELKDLQRDPPTSCSAGPVAEDMFHWQATIIGPNDSPY+GGVFLV+IHFPPDY
Sbjct: 1   MASKRILKELKDLQRDPPTSCSAGPVAEDMFHWQATIIGPNDSPYSGGVFLVTIHFPPDY 60

Query: 61  PFKPPKVAFRTRVFHPNINSNGNICLDILKEQWSPALTISKVLLSICSLLTDPNPDDPLV 120
           PFKPPKVAFRT+VFHPNINSNGNICLDILKEQWSPALTISKVLLSICSLLTDPNPDDPLV
Sbjct: 61  PFKPPKVAFRTKVFHPNINSNGNICLDILKEQWSPALTISKVLLSICSLLTDPNPDDPLV 120

Query: 121 PEIAHMCKTDKVKYESTARSWTHKYAMG 149
           PEIAHMCKTDKVKYESTARSWT KYAMG
Sbjct: 121 PEIAHMCKTDKVKYESTARSWTQKYAMG 148

[Close]

BLAST of Carg05704 vs. NCBI nr
Match: ONH92243.1 (hypothetical protein PRUPE_8G165100 [Prunus persica])

HSP 1 Score: 309.7 bits (792), Expect = 1.4e-80
Identity = 144/148 (97.30%), Postives = 147/148 (99.32%), Query Frame = 0


Query: 1   MASKRILKELKDLQRDPPTSCSAGPVAEDMFHWQATIIGPNDSPYAGGVFLVSIHFPPDY 60
           MASKRILKELKDLQRDPPTSCSAGPVAEDMFHWQATIIGPNDSPY+GGVFLV+IHFPPDY
Sbjct: 27  MASKRILKELKDLQRDPPTSCSAGPVAEDMFHWQATIIGPNDSPYSGGVFLVTIHFPPDY 86

Query: 61  PFKPPKVAFRTRVFHPNINSNGNICLDILKEQWSPALTISKVLLSICSLLTDPNPDDPLV 120
           PFKPPKVAFRT+VFHPNINSNGNICLDILKEQWSPALTISKVLLSICSLLTDPNPDDPLV
Sbjct: 87  PFKPPKVAFRTKVFHPNINSNGNICLDILKEQWSPALTISKVLLSICSLLTDPNPDDPLV 146

Query: 121 PEIAHMCKTDKVKYESTARSWTHKYAMG 149
           PEIAHMCKTDKVKYESTARSWT KYAMG
Sbjct: 147 PEIAHMCKTDKVKYESTARSWTQKYAMG 174

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BLAST of Carg05704 vs. ExPASy Swiss-Prot
Match: P35135 (Ubiquitin-conjugating enzyme E2-17 kDa OS=Solanum lycopersicum OX=4081 PE=2 SV=1)

HSP 1 Score: 297.4 bits (760), Expect = 9.2e-80
Identity = 138/148 (93.24%), Postives = 144/148 (97.30%), Query Frame = 0


Query: 1   MASKRILKELKDLQRDPPTSCSAGPVAEDMFHWQATIIGPNDSPYAGGVFLVSIHFPPDY 60
           MASKRILKELKDLQ+DPPTSCSAGPVAEDMFHWQATI+GP DSPYAGGVFLVSIHFPPDY
Sbjct: 1   MASKRILKELKDLQKDPPTSCSAGPVAEDMFHWQATIMGPTDSPYAGGVFLVSIHFPPDY 60

Query: 61  PFKPPKVAFRTRVFHPNINSNGNICLDILKEQWSPALTISKVLLSICSLLTDPNPDDPLV 120
           PFKPPKVAFRT+VFHPNINSNG+ICLDILKEQWSPALTISKVLLSICSLLTDPNPDDPLV
Sbjct: 61  PFKPPKVAFRTKVFHPNINSNGSICLDILKEQWSPALTISKVLLSICSLLTDPNPDDPLV 120

Query: 121 PEIAHMCKTDKVKYESTARSWTHKYAMG 149
           PEIAHM KTD+ KYE+TARSWT KYAMG
Sbjct: 121 PEIAHMYKTDRAKYETTARSWTQKYAMG 148

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BLAST of Carg05704 vs. ExPASy Swiss-Prot
Match: P35133 (Ubiquitin-conjugating enzyme E2 10 OS=Arabidopsis thaliana OX=3702 GN=UBC10 PE=1 SV=1)

HSP 1 Score: 296.2 bits (757), Expect = 2.1e-79
Identity = 138/148 (93.24%), Postives = 145/148 (97.97%), Query Frame = 0


Query: 1   MASKRILKELKDLQRDPPTSCSAGPVAEDMFHWQATIIGPNDSPYAGGVFLVSIHFPPDY 60
           MASKRILKELKDLQ+DPPTSCSAGPVAEDMFHWQATI+GP++SPYAGGVFLV+IHFPPDY
Sbjct: 1   MASKRILKELKDLQKDPPTSCSAGPVAEDMFHWQATIMGPSESPYAGGVFLVTIHFPPDY 60

Query: 61  PFKPPKVAFRTRVFHPNINSNGNICLDILKEQWSPALTISKVLLSICSLLTDPNPDDPLV 120
           PFKPPKVAFRT+VFHPNINSNG+ICLDILKEQWSPALTISKVLLSICSLLTDPNPDDPLV
Sbjct: 61  PFKPPKVAFRTKVFHPNINSNGSICLDILKEQWSPALTISKVLLSICSLLTDPNPDDPLV 120

Query: 121 PEIAHMCKTDKVKYESTARSWTHKYAMG 149
           PEIAHM KTDK KYESTARSWT KYAMG
Sbjct: 121 PEIAHMYKTDKNKYESTARSWTQKYAMG 148

[Close]

BLAST of Carg05704 vs. ExPASy Swiss-Prot
Match: Q94F47 (Ubiquitin-conjugating enzyme E2 28 OS=Arabidopsis thaliana OX=3702 GN=UBC28 PE=1 SV=1)

HSP 1 Score: 296.2 bits (757), Expect = 2.1e-79
Identity = 136/148 (91.89%), Postives = 145/148 (97.97%), Query Frame = 0


Query: 1   MASKRILKELKDLQRDPPTSCSAGPVAEDMFHWQATIIGPNDSPYAGGVFLVSIHFPPDY 60
           MASKRILKELKDLQ+DPPTSCSAGPVAEDMFHWQATI+GP+DSPY+GGVFLV+IHFPPDY
Sbjct: 1   MASKRILKELKDLQKDPPTSCSAGPVAEDMFHWQATIMGPSDSPYSGGVFLVTIHFPPDY 60

Query: 61  PFKPPKVAFRTRVFHPNINSNGNICLDILKEQWSPALTISKVLLSICSLLTDPNPDDPLV 120
           PFKPPKVAFRT+VFHPN+NSNG+ICLDILKEQWSPALTISKVLLSICSLLTDPNPDDPLV
Sbjct: 61  PFKPPKVAFRTKVFHPNVNSNGSICLDILKEQWSPALTISKVLLSICSLLTDPNPDDPLV 120

Query: 121 PEIAHMCKTDKVKYESTARSWTHKYAMG 149
           PEIAHM KTD+ KYESTARSWT KYAMG
Sbjct: 121 PEIAHMYKTDRAKYESTARSWTQKYAMG 148

[Close]

BLAST of Carg05704 vs. ExPASy Swiss-Prot
Match: P35132 (SUMO-conjugating enzyme UBC9 OS=Arabidopsis thaliana OX=3702 GN=UBC9 PE=1 SV=1)

HSP 1 Score: 295.4 bits (755), Expect = 3.5e-79
Identity = 137/148 (92.57%), Postives = 145/148 (97.97%), Query Frame = 0


Query: 1   MASKRILKELKDLQRDPPTSCSAGPVAEDMFHWQATIIGPNDSPYAGGVFLVSIHFPPDY 60
           MASKRILKELKDLQ+DPPTSCSAGPVAEDMFHWQATI+GP+DSPY+GGVFLV+IHFPPDY
Sbjct: 1   MASKRILKELKDLQKDPPTSCSAGPVAEDMFHWQATIMGPSDSPYSGGVFLVTIHFPPDY 60

Query: 61  PFKPPKVAFRTRVFHPNINSNGNICLDILKEQWSPALTISKVLLSICSLLTDPNPDDPLV 120
           PFKPPKVAFRT+VFHPNINSNG+ICLDILKEQWSPALTISKVLLSICSLLTDPNPDDPLV
Sbjct: 61  PFKPPKVAFRTKVFHPNINSNGSICLDILKEQWSPALTISKVLLSICSLLTDPNPDDPLV 120

Query: 121 PEIAHMCKTDKVKYESTARSWTHKYAMG 149
           PEIAHM KTDK KYESTAR+WT KYAMG
Sbjct: 121 PEIAHMYKTDKNKYESTARTWTQKYAMG 148

[Close]

BLAST of Carg05704 vs. ExPASy Swiss-Prot
Match: Q8S919 (Ubiquitin-conjugating enzyme E2 5B OS=Oryza sativa subsp. japonica OX=39947 GN=UBC5B PE=2 SV=1)

HSP 1 Score: 293.5 bits (750), Expect = 1.3e-78
Identity = 135/148 (91.22%), Postives = 144/148 (97.30%), Query Frame = 0


Query: 1   MASKRILKELKDLQRDPPTSCSAGPVAEDMFHWQATIIGPNDSPYAGGVFLVSIHFPPDY 60
           MASKRILKELKDLQ+DPPTSCSAGPVAEDMFHWQAT++GP+DSPYAGGVFLV+IHFPPDY
Sbjct: 1   MASKRILKELKDLQKDPPTSCSAGPVAEDMFHWQATLMGPSDSPYAGGVFLVTIHFPPDY 60

Query: 61  PFKPPKVAFRTRVFHPNINSNGNICLDILKEQWSPALTISKVLLSICSLLTDPNPDDPLV 120
           PFKPPKVA +T+VFHPNINSNG+ICLDILKEQWSPALTISKVLLSICSLLTDPNPDDPLV
Sbjct: 61  PFKPPKVALKTKVFHPNINSNGSICLDILKEQWSPALTISKVLLSICSLLTDPNPDDPLV 120

Query: 121 PEIAHMCKTDKVKYESTARSWTHKYAMG 149
           PEIAHM KTD+ KYESTARSWT KYAMG
Sbjct: 121 PEIAHMYKTDRAKYESTARSWTQKYAMG 148

[Close]

BLAST of Carg05704 vs. ExPASy TrEMBL
Match: A0A6J1ERH1 (ubiquitin-conjugating enzyme E2-17 kDa-like OS=Cucurbita moschata OX=3662 GN=LOC111435208 PE=3 SV=1)

HSP 1 Score: 316.2 bits (809), Expect = 7.1e-83
Identity = 148/148 (100.00%), Postives = 148/148 (100.00%), Query Frame = 0


Query: 1   MASKRILKELKDLQRDPPTSCSAGPVAEDMFHWQATIIGPNDSPYAGGVFLVSIHFPPDY 60
           MASKRILKELKDLQRDPPTSCSAGPVAEDMFHWQATIIGPNDSPYAGGVFLVSIHFPPDY
Sbjct: 1   MASKRILKELKDLQRDPPTSCSAGPVAEDMFHWQATIIGPNDSPYAGGVFLVSIHFPPDY 60

Query: 61  PFKPPKVAFRTRVFHPNINSNGNICLDILKEQWSPALTISKVLLSICSLLTDPNPDDPLV 120
           PFKPPKVAFRTRVFHPNINSNGNICLDILKEQWSPALTISKVLLSICSLLTDPNPDDPLV
Sbjct: 61  PFKPPKVAFRTRVFHPNINSNGNICLDILKEQWSPALTISKVLLSICSLLTDPNPDDPLV 120

Query: 121 PEIAHMCKTDKVKYESTARSWTHKYAMG 149
           PEIAHMCKTDKVKYESTARSWTHKYAMG
Sbjct: 121 PEIAHMCKTDKVKYESTARSWTHKYAMG 148

[Close]

BLAST of Carg05704 vs. ExPASy TrEMBL
Match: A0A6J1JNB6 (ubiquitin-conjugating enzyme E2-17 kDa-like OS=Cucurbita maxima OX=3661 GN=LOC111486252 PE=3 SV=1)

HSP 1 Score: 316.2 bits (809), Expect = 7.1e-83
Identity = 148/148 (100.00%), Postives = 148/148 (100.00%), Query Frame = 0


Query: 1   MASKRILKELKDLQRDPPTSCSAGPVAEDMFHWQATIIGPNDSPYAGGVFLVSIHFPPDY 60
           MASKRILKELKDLQRDPPTSCSAGPVAEDMFHWQATIIGPNDSPYAGGVFLVSIHFPPDY
Sbjct: 1   MASKRILKELKDLQRDPPTSCSAGPVAEDMFHWQATIIGPNDSPYAGGVFLVSIHFPPDY 60

Query: 61  PFKPPKVAFRTRVFHPNINSNGNICLDILKEQWSPALTISKVLLSICSLLTDPNPDDPLV 120
           PFKPPKVAFRTRVFHPNINSNGNICLDILKEQWSPALTISKVLLSICSLLTDPNPDDPLV
Sbjct: 61  PFKPPKVAFRTRVFHPNINSNGNICLDILKEQWSPALTISKVLLSICSLLTDPNPDDPLV 120

Query: 121 PEIAHMCKTDKVKYESTARSWTHKYAMG 149
           PEIAHMCKTDKVKYESTARSWTHKYAMG
Sbjct: 121 PEIAHMCKTDKVKYESTARSWTHKYAMG 148

[Close]

BLAST of Carg05704 vs. ExPASy TrEMBL
Match: A0A199U9P5 (UBC core domain-containing protein OS=Manihot esculenta OX=3983 GN=MANES_S090300 PE=3 SV=1)

HSP 1 Score: 310.5 bits (794), Expect = 3.9e-81
Identity = 144/148 (97.30%), Postives = 147/148 (99.32%), Query Frame = 0


Query: 1   MASKRILKELKDLQRDPPTSCSAGPVAEDMFHWQATIIGPNDSPYAGGVFLVSIHFPPDY 60
           MASKRILKELKDLQRDPPTSCSAGPVAEDMFHWQATIIGPNDSPYAGGVFLV+IHFPPDY
Sbjct: 1   MASKRILKELKDLQRDPPTSCSAGPVAEDMFHWQATIIGPNDSPYAGGVFLVTIHFPPDY 60

Query: 61  PFKPPKVAFRTRVFHPNINSNGNICLDILKEQWSPALTISKVLLSICSLLTDPNPDDPLV 120
           PFKPPKVAFRT+VFHPNINSNGNICLDILKEQWSPALTISKVLLSICSLLTDPNPDDPLV
Sbjct: 61  PFKPPKVAFRTKVFHPNINSNGNICLDILKEQWSPALTISKVLLSICSLLTDPNPDDPLV 120

Query: 121 PEIAHMCKTDKVKYESTARSWTHKYAMG 149
           PEIAHMCKTDK+KYESTARSWT KYAMG
Sbjct: 121 PEIAHMCKTDKIKYESTARSWTQKYAMG 148

[Close]

BLAST of Carg05704 vs. ExPASy TrEMBL
Match: A0A067K0A8 (UBC core domain-containing protein OS=Jatropha curcas OX=180498 GN=JCGZ_18818 PE=3 SV=1)

HSP 1 Score: 309.7 bits (792), Expect = 6.6e-81
Identity = 144/148 (97.30%), Postives = 147/148 (99.32%), Query Frame = 0


Query: 1   MASKRILKELKDLQRDPPTSCSAGPVAEDMFHWQATIIGPNDSPYAGGVFLVSIHFPPDY 60
           MASKRILKELKDLQRDPPTSCSAGPVAEDMFHWQATIIGPNDSPYAGGVFLV+IHFPPDY
Sbjct: 1   MASKRILKELKDLQRDPPTSCSAGPVAEDMFHWQATIIGPNDSPYAGGVFLVTIHFPPDY 60

Query: 61  PFKPPKVAFRTRVFHPNINSNGNICLDILKEQWSPALTISKVLLSICSLLTDPNPDDPLV 120
           PFKPPKVAFRT+VFHPNINSNGNICLDILKEQWSPALTISKVLLSICSLLTDPNPDDPLV
Sbjct: 61  PFKPPKVAFRTKVFHPNINSNGNICLDILKEQWSPALTISKVLLSICSLLTDPNPDDPLV 120

Query: 121 PEIAHMCKTDKVKYESTARSWTHKYAMG 149
           PEIAHMCKTDKVKY+STARSWT KYAMG
Sbjct: 121 PEIAHMCKTDKVKYDSTARSWTQKYAMG 148

[Close]

BLAST of Carg05704 vs. ExPASy TrEMBL
Match: A0A0A0K4N5 (Ubiquitin carrier protein OS=Cucumis sativus OX=3659 GN=Csa_7G011870 PE=3 SV=1)

HSP 1 Score: 309.7 bits (792), Expect = 6.6e-81
Identity = 143/148 (96.62%), Postives = 148/148 (100.00%), Query Frame = 0


Query: 1   MASKRILKELKDLQRDPPTSCSAGPVAEDMFHWQATIIGPNDSPYAGGVFLVSIHFPPDY 60
           MASKRILKELKDLQRDPPTSCSAGPVAEDMFHWQATIIGP+DSPY+GGVFLV+IHFPPDY
Sbjct: 1   MASKRILKELKDLQRDPPTSCSAGPVAEDMFHWQATIIGPSDSPYSGGVFLVTIHFPPDY 60

Query: 61  PFKPPKVAFRTRVFHPNINSNGNICLDILKEQWSPALTISKVLLSICSLLTDPNPDDPLV 120
           PFKPPKVAFRT+VFHPNINSNGNICLDILKEQWSPALTISKVLLSICSLLTDPNPDDPLV
Sbjct: 61  PFKPPKVAFRTKVFHPNINSNGNICLDILKEQWSPALTISKVLLSICSLLTDPNPDDPLV 120

Query: 121 PEIAHMCKTDKVKYESTARSWTHKYAMG 149
           PEIAHMCKTDK+KYESTARSWTHKYAMG
Sbjct: 121 PEIAHMCKTDKLKYESTARSWTHKYAMG 148

[Close]

BLAST of Carg05704 vs. TAIR 10
Match: AT1G64230.1 (ubiquitin-conjugating enzyme 28 )

HSP 1 Score: 296.2 bits (757), Expect = 1.5e-80
Identity = 136/148 (91.89%), Postives = 145/148 (97.97%), Query Frame = 0


Query: 1   MASKRILKELKDLQRDPPTSCSAGPVAEDMFHWQATIIGPNDSPYAGGVFLVSIHFPPDY 60
           MASKRILKELKDLQ+DPPTSCSAGPVAEDMFHWQATI+GP+DSPY+GGVFLV+IHFPPDY
Sbjct: 1   MASKRILKELKDLQKDPPTSCSAGPVAEDMFHWQATIMGPSDSPYSGGVFLVTIHFPPDY 60

Query: 61  PFKPPKVAFRTRVFHPNINSNGNICLDILKEQWSPALTISKVLLSICSLLTDPNPDDPLV 120
           PFKPPKVAFRT+VFHPN+NSNG+ICLDILKEQWSPALTISKVLLSICSLLTDPNPDDPLV
Sbjct: 61  PFKPPKVAFRTKVFHPNVNSNGSICLDILKEQWSPALTISKVLLSICSLLTDPNPDDPLV 120

Query: 121 PEIAHMCKTDKVKYESTARSWTHKYAMG 149
           PEIAHM KTD+ KYESTARSWT KYAMG
Sbjct: 121 PEIAHMYKTDRAKYESTARSWTQKYAMG 148

[Close]

BLAST of Carg05704 vs. TAIR 10
Match: AT1G64230.2 (ubiquitin-conjugating enzyme 28 )

HSP 1 Score: 296.2 bits (757), Expect = 1.5e-80
Identity = 136/148 (91.89%), Postives = 145/148 (97.97%), Query Frame = 0


Query: 1   MASKRILKELKDLQRDPPTSCSAGPVAEDMFHWQATIIGPNDSPYAGGVFLVSIHFPPDY 60
           MASKRILKELKDLQ+DPPTSCSAGPVAEDMFHWQATI+GP+DSPY+GGVFLV+IHFPPDY
Sbjct: 1   MASKRILKELKDLQKDPPTSCSAGPVAEDMFHWQATIMGPSDSPYSGGVFLVTIHFPPDY 60

Query: 61  PFKPPKVAFRTRVFHPNINSNGNICLDILKEQWSPALTISKVLLSICSLLTDPNPDDPLV 120
           PFKPPKVAFRT+VFHPN+NSNG+ICLDILKEQWSPALTISKVLLSICSLLTDPNPDDPLV
Sbjct: 61  PFKPPKVAFRTKVFHPNVNSNGSICLDILKEQWSPALTISKVLLSICSLLTDPNPDDPLV 120

Query: 121 PEIAHMCKTDKVKYESTARSWTHKYAMG 149
           PEIAHM KTD+ KYESTARSWT KYAMG
Sbjct: 121 PEIAHMYKTDRAKYESTARSWTQKYAMG 148

[Close]

BLAST of Carg05704 vs. TAIR 10
Match: AT5G53300.1 (ubiquitin-conjugating enzyme 10 )

HSP 1 Score: 296.2 bits (757), Expect = 1.5e-80
Identity = 138/148 (93.24%), Postives = 145/148 (97.97%), Query Frame = 0


Query: 1   MASKRILKELKDLQRDPPTSCSAGPVAEDMFHWQATIIGPNDSPYAGGVFLVSIHFPPDY 60
           MASKRILKELKDLQ+DPPTSCSAGPVAEDMFHWQATI+GP++SPYAGGVFLV+IHFPPDY
Sbjct: 1   MASKRILKELKDLQKDPPTSCSAGPVAEDMFHWQATIMGPSESPYAGGVFLVTIHFPPDY 60

Query: 61  PFKPPKVAFRTRVFHPNINSNGNICLDILKEQWSPALTISKVLLSICSLLTDPNPDDPLV 120
           PFKPPKVAFRT+VFHPNINSNG+ICLDILKEQWSPALTISKVLLSICSLLTDPNPDDPLV
Sbjct: 61  PFKPPKVAFRTKVFHPNINSNGSICLDILKEQWSPALTISKVLLSICSLLTDPNPDDPLV 120

Query: 121 PEIAHMCKTDKVKYESTARSWTHKYAMG 149
           PEIAHM KTDK KYESTARSWT KYAMG
Sbjct: 121 PEIAHMYKTDKNKYESTARSWTQKYAMG 148

[Close]

BLAST of Carg05704 vs. TAIR 10
Match: AT5G53300.2 (ubiquitin-conjugating enzyme 10 )

HSP 1 Score: 296.2 bits (757), Expect = 1.5e-80
Identity = 138/148 (93.24%), Postives = 145/148 (97.97%), Query Frame = 0


Query: 1   MASKRILKELKDLQRDPPTSCSAGPVAEDMFHWQATIIGPNDSPYAGGVFLVSIHFPPDY 60
           MASKRILKELKDLQ+DPPTSCSAGPVAEDMFHWQATI+GP++SPYAGGVFLV+IHFPPDY
Sbjct: 1   MASKRILKELKDLQKDPPTSCSAGPVAEDMFHWQATIMGPSESPYAGGVFLVTIHFPPDY 60

Query: 61  PFKPPKVAFRTRVFHPNINSNGNICLDILKEQWSPALTISKVLLSICSLLTDPNPDDPLV 120
           PFKPPKVAFRT+VFHPNINSNG+ICLDILKEQWSPALTISKVLLSICSLLTDPNPDDPLV
Sbjct: 61  PFKPPKVAFRTKVFHPNINSNGSICLDILKEQWSPALTISKVLLSICSLLTDPNPDDPLV 120

Query: 121 PEIAHMCKTDKVKYESTARSWTHKYAMG 149
           PEIAHM KTDK KYESTARSWT KYAMG
Sbjct: 121 PEIAHMYKTDKNKYESTARSWTQKYAMG 148

[Close]

BLAST of Carg05704 vs. TAIR 10
Match: AT5G53300.4 (ubiquitin-conjugating enzyme 10 )

HSP 1 Score: 296.2 bits (757), Expect = 1.5e-80
Identity = 138/148 (93.24%), Postives = 145/148 (97.97%), Query Frame = 0


Query: 1   MASKRILKELKDLQRDPPTSCSAGPVAEDMFHWQATIIGPNDSPYAGGVFLVSIHFPPDY 60
           MASKRILKELKDLQ+DPPTSCSAGPVAEDMFHWQATI+GP++SPYAGGVFLV+IHFPPDY
Sbjct: 1   MASKRILKELKDLQKDPPTSCSAGPVAEDMFHWQATIMGPSESPYAGGVFLVTIHFPPDY 60

Query: 61  PFKPPKVAFRTRVFHPNINSNGNICLDILKEQWSPALTISKVLLSICSLLTDPNPDDPLV 120
           PFKPPKVAFRT+VFHPNINSNG+ICLDILKEQWSPALTISKVLLSICSLLTDPNPDDPLV
Sbjct: 61  PFKPPKVAFRTKVFHPNINSNGSICLDILKEQWSPALTISKVLLSICSLLTDPNPDDPLV 120

Query: 121 PEIAHMCKTDKVKYESTARSWTHKYAMG 149
           PEIAHM KTDK KYESTARSWT KYAMG
Sbjct: 121 PEIAHMYKTDKNKYESTARSWTQKYAMG 148

The following BLAST results are available for this feature:

BLAST of Carg05704 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022928354.1	1.5e-82	100.00	ubiquitin-conjugating enzyme E2-17 kDa-like [Cucurbita moschata] >XP_022928355.1...	[more]
XP_021603043.1	8.0e-81	97.30	ubiquitin-conjugating enzyme E2 10-like isoform X2 [Manihot esculenta] >KAG86558...	[more]
XP_004144844.1	1.4e-80	96.62	ubiquitin-conjugating enzyme E2 28 [Cucumis sativus] >KGN43247.1 hypothetical pr...	[more]
XP_007201846.1	1.4e-80	97.30	ubiquitin-conjugating enzyme E2 28 isoform X2 [Prunus persica]	[more]
ONH92243.1	1.4e-80	97.30	hypothetical protein PRUPE_8G165100 [Prunus persica]	[more]

BLAST of Carg05704 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
P35135	9.2e-80	93.24	Ubiquitin-conjugating enzyme E2-17 kDa OS=Solanum lycopersicum OX=4081 PE=2 SV=1	[more]
P35133	2.1e-79	93.24	Ubiquitin-conjugating enzyme E2 10 OS=Arabidopsis thaliana OX=3702 GN=UBC10 PE=1...	[more]
Q94F47	2.1e-79	91.89	Ubiquitin-conjugating enzyme E2 28 OS=Arabidopsis thaliana OX=3702 GN=UBC28 PE=1...	[more]
P35132	3.5e-79	92.57	SUMO-conjugating enzyme UBC9 OS=Arabidopsis thaliana OX=3702 GN=UBC9 PE=1 SV=1	[more]
Q8S919	1.3e-78	91.22	Ubiquitin-conjugating enzyme E2 5B OS=Oryza sativa subsp. japonica OX=39947 GN=U...	[more]

BLAST of Carg05704 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1ERH1	7.1e-83	100.00	ubiquitin-conjugating enzyme E2-17 kDa-like OS=Cucurbita moschata OX=3662 GN=LOC...	[more]
A0A6J1JNB6	7.1e-83	100.00	ubiquitin-conjugating enzyme E2-17 kDa-like OS=Cucurbita maxima OX=3661 GN=LOC11...	[more]
A0A199U9P5	3.9e-81	97.30	UBC core domain-containing protein OS=Manihot esculenta OX=3983 GN=MANES_S090300...	[more]
A0A067K0A8	6.6e-81	97.30	UBC core domain-containing protein OS=Jatropha curcas OX=180498 GN=JCGZ_18818 PE...	[more]
A0A0A0K4N5	6.6e-81	96.62	Ubiquitin carrier protein OS=Cucumis sativus OX=3659 GN=Csa_7G011870 PE=3 SV=1	[more]

BLAST of Carg05704 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G64230.1	1.5e-80	91.89	ubiquitin-conjugating enzyme 28	[more]
AT1G64230.2	1.5e-80	91.89	ubiquitin-conjugating enzyme 28	[more]
AT5G53300.1	1.5e-80	93.24	ubiquitin-conjugating enzyme 10	[more]
AT5G53300.2	1.5e-80	93.24	ubiquitin-conjugating enzyme 10	[more]
AT5G53300.4	1.5e-80	93.24	ubiquitin-conjugating enzyme 10	[more]

InterPro

Analysis Name: InterPro Annotations of Silver-seed gourd (SMH-JMG-627) v2
Date Performed: 2021-10-25

Position :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	SMART	SM00212	ubc_7	coord: 4..147 e-value: 6.1E-77 score: 271.6
None	No IPR available	PANTHER	PTHR24068	UBIQUITIN-CONJUGATING ENZYME E2	coord: 3..145
None	No IPR available	PANTHER	PTHR24068:SF346	BNAA01G32320D PROTEIN	coord: 3..145
IPR000608	Ubiquitin-conjugating enzyme E2	PFAM	PF00179	UQ_con	coord: 5..141 e-value: 2.7E-52 score: 176.1
IPR000608	Ubiquitin-conjugating enzyme E2	PROSITE	PS50127	UBC_2	coord: 1..147 score: 60.668728
IPR000608	Ubiquitin-conjugating enzyme E2	CDD	cd00195	UBCc	coord: 3..142 e-value: 6.69644E-74 score: 215.529
IPR016135	Ubiquitin-conjugating enzyme/RWD-like	GENE3D	3.10.110.10	Ubiquitin Conjugating Enzyme	coord: 1..148 e-value: 2.8E-73 score: 246.8
IPR016135	Ubiquitin-conjugating enzyme/RWD-like	SUPERFAMILY	54495	UBC-like	coord: 2..147
IPR023313	Ubiquitin-conjugating enzyme, active site	PROSITE	PS00183	UBC_1	coord: 74..89

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Carg05704-RA	Carg05704-RA	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0000209	protein polyubiquitination
biological_process	GO:0007264	small GTPase mediated signal transduction
biological_process	GO:0006511	ubiquitin-dependent protein catabolic process
cellular_component	GO:0016021	integral component of membrane
cellular_component	GO:0005634	nucleus
molecular_function	GO:0005524	ATP binding
molecular_function	GO:0003924	GTPase activity
molecular_function	GO:0005525	GTP binding
molecular_function	GO:0061631	ubiquitin conjugating enzyme activity