Carg05625 (gene) Silver-seed gourd (SMH-JMG-627) v2

Overview


Name	Carg05625
Type	gene
Organism	Cucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
Description	protein translation factor SUI1 homolog
Location	Carg_Chr16: 3428428 .. 3429726 (+)
RNA-Seq Expression	Carg05625
Synteny	Carg05625

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTTCGAGAACAATCCTGACCCCATTCGGATGCGAATTCGTGATGGAAACATACGGATTCTTGCCGCGTTCCCCAAAATCTCTATAAATAATCCCTATACCGCTGAGCGTTGGTCGCATCATTCGTTGTCCGTTCTCTGTTCTTCAGTACCCTCTCGTAAGTCTTTGATCCTTTCTGAATAGTTGAATCAGTTCTTTTTTATTCTCATTGTTAGCTCTACTTTAACTTGTGTTCCTGTTTTTGTTGCTGGATTTATCTTTTTGCTACTTTGATTTGTGGTTTATGCTCATTTGACTTGATGATTTGATGATCGTCGTTGGGAGATTTCTGTTTAGATTGGATTTTAGTTTGTATCGGCCGGATTCTCGTCTTGCTTGAAACGATTCTGTTGTTGCGTTCTTTATTGAAGTCGTGGATGATCTACGGTTTTTCTTTCTGGATTCGTTTTGTTGTTTGAGTATTTGGTTAGATGATCGAGGAGATTCATCGTTCTGGATTCTTGTCCTGTTGTTCTCTTCATGTTTAGGTTGGGTCTTAGTTTGTATCGGCCGGATTCTCGTCTTGCTTGTTTAGATTCTGTTGTTCGGTTCGTTTATTGAAGTCATGGATGATCTAGGGTTTTTCTTTCTGGATTCTTTGTTTTGTTGTTTGAGCTTTAGGTTTTATGAGTATATGGTTAGGTGATCGTCAGAAGATTCATCGTTGTTCTCTTCATCTGTTCAAGTGTTTTCTTATACTAACAACCGTTTAATCCGGCCAATGGATGAACAAGGGATTTGTTCTTGTTCATTGGTATTGATTGTATCTGATCCGCTTTGGGGTTTCGATTGATTGGAAGCCATTGATTGTGGGAGTTGGCGTTTAAAGATAAGCCAAGGCTTACTTCTATCCATATTGATTTTGATATCTATGTTGTGTTCCAGATTGTGGGTGTTCGAGTTTTGATCCAAACAAGGTTGATGGTTGAAATAGACGTCCAAATCCCATCTGCTTACGATCCATTCGCAGACGCCAAGGATTCCGATGCCCCGGGAGGCAAAGAGTATGTTCATATCCGCGTGCAGCAGAGGAATGGCAAGAAGTGCTTGACAACAGTCCAGGGTCTGAAGAAGGATTTCAGCTACGAGAAGATCCTCAAAGACGTGAAGAAGGAGTTTTGCTGTAATGGTAACGTCGTCCAAGACAAAGAATTGGGGAAGATAATTCAGCTTCAGGGCGATCAGCGCAAGAACGTGTCTCAGTTCCTGGTTCAGGCTGGGATTGTTAAGAAGGATCAGATCAAAATCCATGGATTTTAA

mRNA sequence

ATGTTCGAGAACAATCCTGACCCCATTCGGATGCGAATTCGTGATGGAAACATACGGATTCTTGCCGCGTTCCCCAAAATCTCTATAAATAATCCCTATACCGCTGAGCGTTGGTCGCATCATTCGTTGTCCGTTCTCTGTTCTTCAGTACCCTCTCTCGTGGATGATCTACGGTTGGGTCTTAGTTTGTATCGGCCGGATTCTCGTCTTGCTTGTTTAGATTCTGTTGTTCGGTTTTATGAGTATATGATTGTGGGTGTTCGAGTTTTGATCCAAACAAGGTTGATGGTTGAAATAGACGTCCAAATCCCATCTGCTTACGATCCATTCGCAGACGCCAAGGATTCCGATGCCCCGGGAGGCAAAGAGTATGTTCATATCCGCGTGCAGCAGAGGAATGGCAAGAAGTGCTTGACAACAGTCCAGGGTCTGAAGAAGGATTTCAGCTACGAGAAGATCCTCAAAGACGTGAAGAAGGAGTTTTGCTGTAATGGTAACGTCGTCCAAGACAAAGAATTGGGGAAGATAATTCAGCTTCAGGGCGATCAGCGCAAGAACGTGTCTCAGTTCCTGGTTCAGGCTGGGATTGTTAAGAAGGATCAGATCAAAATCCATGGATTTTAA

Coding sequence (CDS)

ATGTTCGAGAACAATCCTGACCCCATTCGGATGCGAATTCGTGATGGAAACATACGGATTCTTGCCGCGTTCCCCAAAATCTCTATAAATAATCCCTATACCGCTGAGCGTTGGTCGCATCATTCGTTGTCCGTTCTCTGTTCTTCAGTACCCTCTCTCGTGGATGATCTACGGTTGGGTCTTAGTTTGTATCGGCCGGATTCTCGTCTTGCTTGTTTAGATTCTGTTGTTCGGTTTTATGAGTATATGATTGTGGGTGTTCGAGTTTTGATCCAAACAAGGTTGATGGTTGAAATAGACGTCCAAATCCCATCTGCTTACGATCCATTCGCAGACGCCAAGGATTCCGATGCCCCGGGAGGCAAAGAGTATGTTCATATCCGCGTGCAGCAGAGGAATGGCAAGAAGTGCTTGACAACAGTCCAGGGTCTGAAGAAGGATTTCAGCTACGAGAAGATCCTCAAAGACGTGAAGAAGGAGTTTTGCTGTAATGGTAACGTCGTCCAAGACAAAGAATTGGGGAAGATAATTCAGCTTCAGGGCGATCAGCGCAAGAACGTGTCTCAGTTCCTGGTTCAGGCTGGGATTGTTAAGAAGGATCAGATCAAAATCCATGGATTTTAA

Protein sequence

MFENNPDPIRMRIRDGNIRILAAFPKISINNPYTAERWSHHSLSVLCSSVPSLVDDLRLGLSLYRPDSRLACLDSVVRFYEYMIVGVRVLIQTRLMVEIDVQIPSAYDPFADAKDSDAPGGKEYVHIRVQQRNGKKCLTTVQGLKKDFSYEKILKDVKKEFCCNGNVVQDKELGKIIQLQGDQRKNVSQFLVQAGIVKKDQIKIHGF

Homology

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BLAST of Carg05625 vs. NCBI nr
Match: KAG7015195.1 (Protein translation factor SUI1-like 1, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 417.9 bits (1073), Expect = 5.0e-113
Identity = 207/207 (100.00%), Postives = 207/207 (100.00%), Query Frame = 0


Query: 1   MFENNPDPIRMRIRDGNIRILAAFPKISINNPYTAERWSHHSLSVLCSSVPSLVDDLRLG 60
           MFENNPDPIRMRIRDGNIRILAAFPKISINNPYTAERWSHHSLSVLCSSVPSLVDDLRLG
Sbjct: 1   MFENNPDPIRMRIRDGNIRILAAFPKISINNPYTAERWSHHSLSVLCSSVPSLVDDLRLG 60

Query: 61  LSLYRPDSRLACLDSVVRFYEYMIVGVRVLIQTRLMVEIDVQIPSAYDPFADAKDSDAPG 120
           LSLYRPDSRLACLDSVVRFYEYMIVGVRVLIQTRLMVEIDVQIPSAYDPFADAKDSDAPG
Sbjct: 61  LSLYRPDSRLACLDSVVRFYEYMIVGVRVLIQTRLMVEIDVQIPSAYDPFADAKDSDAPG 120

Query: 121 GKEYVHIRVQQRNGKKCLTTVQGLKKDFSYEKILKDVKKEFCCNGNVVQDKELGKIIQLQ 180
           GKEYVHIRVQQRNGKKCLTTVQGLKKDFSYEKILKDVKKEFCCNGNVVQDKELGKIIQLQ
Sbjct: 121 GKEYVHIRVQQRNGKKCLTTVQGLKKDFSYEKILKDVKKEFCCNGNVVQDKELGKIIQLQ 180

Query: 181 GDQRKNVSQFLVQAGIVKKDQIKIHGF 208
           GDQRKNVSQFLVQAGIVKKDQIKIHGF
Sbjct: 181 GDQRKNVSQFLVQAGIVKKDQIKIHGF 207

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BLAST of Carg05625 vs. NCBI nr
Match: KAG6607799.1 (AUGMIN subunit 4, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 247.7 bits (631), Expect = 8.9e-62
Identity = 123/125 (98.40%), Postives = 125/125 (100.00%), Query Frame = 0


Query: 83  MIVGVRVLIQTRLMVEIDVQIPSAYDPFADAKDSDAPGGKEYVHIRVQQRNGKKCLTTVQ 142
           +IVGVRVLIQTRLMVEIDVQIPSAYDPFADA+DSDAPGGKEYVHIRVQQRNGKKCLTTVQ
Sbjct: 436 LIVGVRVLIQTRLMVEIDVQIPSAYDPFADARDSDAPGGKEYVHIRVQQRNGKKCLTTVQ 495

Query: 143 GLKKDFSYEKILKDVKKEFCCNGNVVQDKELGKIIQLQGDQRKNVSQFLVQAGIVKKDQI 202
           GLKKDFSYEKILKDVKKEFCCNGNVVQDKELGKIIQLQGDQRKNVSQFLVQAGIVKKDQI
Sbjct: 496 GLKKDFSYEKILKDVKKEFCCNGNVVQDKELGKIIQLQGDQRKNVSQFLVQAGIVKKDQI 555

Query: 203 KIHGF 208
           KIHGF
Sbjct: 556 KIHGF 560

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BLAST of Carg05625 vs. NCBI nr
Match: XP_022940170.1 (protein translation factor SUI1 homolog 2-like [Cucurbita moschata] >XP_022981656.1 protein translation factor SUI1 homolog 2-like [Cucurbita maxima] >XP_022981658.1 protein translation factor SUI1 homolog 2-like [Cucurbita maxima] >XP_023525155.1 protein translation factor SUI1 homolog 2-like isoform X1 [Cucurbita pepo subsp. pepo] >XP_023525156.1 protein translation factor SUI1 homolog 2-like isoform X2 [Cucurbita pepo subsp. pepo] >XP_023525157.1 protein translation factor SUI1 homolog 2-like isoform X1 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 228.4 bits (581), Expect = 5.6e-56
Identity = 112/112 (100.00%), Postives = 112/112 (100.00%), Query Frame = 0


Query: 96  MVEIDVQIPSAYDPFADAKDSDAPGGKEYVHIRVQQRNGKKCLTTVQGLKKDFSYEKILK 155
           MVEIDVQIPSAYDPFADAKDSDAPGGKEYVHIRVQQRNGKKCLTTVQGLKKDFSYEKILK
Sbjct: 1   MVEIDVQIPSAYDPFADAKDSDAPGGKEYVHIRVQQRNGKKCLTTVQGLKKDFSYEKILK 60

Query: 156 DVKKEFCCNGNVVQDKELGKIIQLQGDQRKNVSQFLVQAGIVKKDQIKIHGF 208
           DVKKEFCCNGNVVQDKELGKIIQLQGDQRKNVSQFLVQAGIVKKDQIKIHGF
Sbjct: 61  DVKKEFCCNGNVVQDKELGKIIQLQGDQRKNVSQFLVQAGIVKKDQIKIHGF 112

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BLAST of Carg05625 vs. NCBI nr
Match: KAA0025154.1 (SUI1 domain-containing protein [Cucumis melo var. makuwa] >TYK23112.1 SUI1 domain-containing protein [Cucumis melo var. makuwa])

HSP 1 Score: 226.5 bits (576), Expect = 2.1e-55
Identity = 111/121 (91.74%), Postives = 117/121 (96.69%), Query Frame = 0


Query: 87  VRVLIQTRLMVEIDVQIPSAYDPFADAKDSDAPGGKEYVHIRVQQRNGKKCLTTVQGLKK 146
           V+V IQ+R MVE+D QIPSA+DPFADAKDSDAPG KEYVHIRVQQRNGKKCLTTVQGLKK
Sbjct: 30  VQVSIQSRFMVELDFQIPSAFDPFADAKDSDAPGTKEYVHIRVQQRNGKKCLTTVQGLKK 89

Query: 147 DFSYEKILKDVKKEFCCNGNVVQDKELGKIIQLQGDQRKNVSQFLVQAGIVKKDQIKIHG 206
           +FSYEKILKDVKKEFCCNGNVVQDKELGKIIQLQGDQRKNVSQFLVQAG+VKKDQIKIHG
Sbjct: 90  EFSYEKILKDVKKEFCCNGNVVQDKELGKIIQLQGDQRKNVSQFLVQAGLVKKDQIKIHG 149

Query: 207 F 208
           F
Sbjct: 150 F 150

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BLAST of Carg05625 vs. NCBI nr
Match: KAF3453464.1 (hypothetical protein FNV43_RR03904 [Rhamnella rubrinervis])

HSP 1 Score: 220.3 bits (560), Expect = 1.5e-53
Identity = 106/112 (94.64%), Postives = 111/112 (99.11%), Query Frame = 0


Query: 96  MVEIDVQIPSAYDPFADAKDSDAPGGKEYVHIRVQQRNGKKCLTTVQGLKKDFSYEKILK 155
           MVE+D QIPSA+DPFA+AKDSDAPGGKEYVHIRVQQRNGKKCLTTVQGLKKDFSYEKILK
Sbjct: 1   MVELDFQIPSAFDPFAEAKDSDAPGGKEYVHIRVQQRNGKKCLTTVQGLKKDFSYEKILK 60

Query: 156 DVKKEFCCNGNVVQDKELGKIIQLQGDQRKNVSQFLVQAGIVKKDQIKIHGF 208
           D+KKEFCCNGNVVQDKELGKIIQLQGDQRKNVSQFLVQAGI+KKDQIKIHGF
Sbjct: 61  DLKKEFCCNGNVVQDKELGKIIQLQGDQRKNVSQFLVQAGILKKDQIKIHGF 112

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BLAST of Carg05625 vs. ExPASy Swiss-Prot
Match: P41568 (Protein translation factor SUI1 homolog 1 OS=Arabidopsis thaliana OX=3702 GN=At4g27130 PE=1 SV=2)

HSP 1 Score: 179.5 bits (454), Expect = 3.9e-44
Identity = 87/113 (76.99%), Postives = 99/113 (87.61%), Query Frame = 0


Query: 96  MVEIDVQIPSAYDPFADAKDSDAPGG-KEYVHIRVQQRNGKKCLTTVQGLKKDFSYEKIL 155
           M E+D Q+P+A+DPFADA   D+  G KEYVHIRVQQRNG+K LTTVQGLKK++SY KIL
Sbjct: 1   MSELDSQVPTAFDPFADANAEDSGAGTKEYVHIRVQQRNGRKSLTTVQGLKKEYSYTKIL 60

Query: 156 KDVKKEFCCNGNVVQDKELGKIIQLQGDQRKNVSQFLVQAGIVKKDQIKIHGF 208
           KD+KKEFCCNG VVQD ELG++IQLQGDQRKNVS FLVQAG+VKKD IKIHGF
Sbjct: 61  KDLKKEFCCNGTVVQDSELGQVIQLQGDQRKNVSTFLVQAGLVKKDNIKIHGF 113

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BLAST of Carg05625 vs. ExPASy Swiss-Prot
Match: Q94JV4 (Protein translation factor SUI1 homolog 2 OS=Arabidopsis thaliana OX=3702 GN=At1g54290 PE=3 SV=1)

HSP 1 Score: 179.5 bits (454), Expect = 3.9e-44
Identity = 86/113 (76.11%), Postives = 100/113 (88.50%), Query Frame = 0


Query: 96  MVEIDVQIPSAYDPFADAKDSDAPGG-KEYVHIRVQQRNGKKCLTTVQGLKKDFSYEKIL 155
           M +++VQ+P+A+DPFADA   D+  G KEYVHIRVQQRNG+K LTTVQGLKK++SY KIL
Sbjct: 1   MSDLEVQVPTAFDPFADANAEDSGAGTKEYVHIRVQQRNGRKSLTTVQGLKKEYSYSKIL 60

Query: 156 KDVKKEFCCNGNVVQDKELGKIIQLQGDQRKNVSQFLVQAGIVKKDQIKIHGF 208
           KD+KKEFCCNG VVQD ELG++IQLQGDQRKNVS FLVQAG+VKKD IKIHGF
Sbjct: 61  KDLKKEFCCNGTVVQDSELGQVIQLQGDQRKNVSTFLVQAGLVKKDNIKIHGF 113

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BLAST of Carg05625 vs. ExPASy Swiss-Prot
Match: P56330 (Protein translation factor SUI1 homolog OS=Zea mays OX=4577 GN=TIF PE=3 SV=1)

HSP 1 Score: 178.7 bits (452), Expect = 6.7e-44
Identity = 85/115 (73.91%), Postives = 100/115 (86.96%), Query Frame = 0


Query: 96  MVEIDVQIPSAYDPFADAKDSD---APGGKEYVHIRVQQRNGKKCLTTVQGLKKDFSYEK 155
           M ++D+QIP+A+DPFA+A   D   A G K+YVH+R+QQRNG+K LTTVQGLKK+FSY K
Sbjct: 1   MSDLDIQIPTAFDPFAEANAGDSGAAAGSKDYVHVRIQQRNGRKSLTTVQGLKKEFSYSK 60

Query: 156 ILKDVKKEFCCNGNVVQDKELGKIIQLQGDQRKNVSQFLVQAGIVKKDQIKIHGF 208
           ILKD+KKEFCCNG VVQD ELG++IQLQGDQRKNVS FLVQAGIVKK+ IKIHGF
Sbjct: 61  ILKDLKKEFCCNGTVVQDPELGQVIQLQGDQRKNVSNFLVQAGIVKKEHIKIHGF 115

[Close]

BLAST of Carg05625 vs. ExPASy Swiss-Prot
Match: A6MZM2 (Protein translation factor SUI1 homolog OS=Oryza sativa subsp. indica OX=39946 GN=GOS2 PE=2 SV=1)

HSP 1 Score: 178.7 bits (452), Expect = 6.7e-44
Identity = 85/115 (73.91%), Postives = 100/115 (86.96%), Query Frame = 0


Query: 96  MVEIDVQIPSAYDPFADAKDSD---APGGKEYVHIRVQQRNGKKCLTTVQGLKKDFSYEK 155
           M ++D+QIP+A+DPFA+A   D   A G K+YVH+R+QQRNG+K LTTVQGLKK+FSY K
Sbjct: 1   MSDLDIQIPTAFDPFAEANAGDSGAAAGSKDYVHVRIQQRNGRKSLTTVQGLKKEFSYNK 60

Query: 156 ILKDVKKEFCCNGNVVQDKELGKIIQLQGDQRKNVSQFLVQAGIVKKDQIKIHGF 208
           ILKD+KKEFCCNG VVQD ELG++IQLQGDQRKNVS FLVQAGIVKK+ IKIHGF
Sbjct: 61  ILKDLKKEFCCNGTVVQDPELGQVIQLQGDQRKNVSNFLVQAGIVKKEHIKIHGF 115

[Close]

BLAST of Carg05625 vs. ExPASy Swiss-Prot
Match: Q0D5W6 (Protein translation factor SUI1 homolog OS=Oryza sativa subsp. japonica OX=39947 GN=GOS2 PE=3 SV=1)

HSP 1 Score: 178.7 bits (452), Expect = 6.7e-44
Identity = 85/115 (73.91%), Postives = 100/115 (86.96%), Query Frame = 0


Query: 96  MVEIDVQIPSAYDPFADAKDSD---APGGKEYVHIRVQQRNGKKCLTTVQGLKKDFSYEK 155
           M ++D+QIP+A+DPFA+A   D   A G K+YVH+R+QQRNG+K LTTVQGLKK+FSY K
Sbjct: 1   MSDLDIQIPTAFDPFAEANAGDSGAAAGSKDYVHVRIQQRNGRKSLTTVQGLKKEFSYNK 60

Query: 156 ILKDVKKEFCCNGNVVQDKELGKIIQLQGDQRKNVSQFLVQAGIVKKDQIKIHGF 208
           ILKD+KKEFCCNG VVQD ELG++IQLQGDQRKNVS FLVQAGIVKK+ IKIHGF
Sbjct: 61  ILKDLKKEFCCNGTVVQDPELGQVIQLQGDQRKNVSNFLVQAGIVKKEHIKIHGF 115

[Close]

BLAST of Carg05625 vs. ExPASy TrEMBL
Match: A0A6J1IX56 (protein translation factor SUI1 homolog 2-like OS=Cucurbita maxima OX=3661 GN=LOC111480714 PE=3 SV=1)

HSP 1 Score: 228.4 bits (581), Expect = 2.7e-56
Identity = 112/112 (100.00%), Postives = 112/112 (100.00%), Query Frame = 0


Query: 96  MVEIDVQIPSAYDPFADAKDSDAPGGKEYVHIRVQQRNGKKCLTTVQGLKKDFSYEKILK 155
           MVEIDVQIPSAYDPFADAKDSDAPGGKEYVHIRVQQRNGKKCLTTVQGLKKDFSYEKILK
Sbjct: 1   MVEIDVQIPSAYDPFADAKDSDAPGGKEYVHIRVQQRNGKKCLTTVQGLKKDFSYEKILK 60

Query: 156 DVKKEFCCNGNVVQDKELGKIIQLQGDQRKNVSQFLVQAGIVKKDQIKIHGF 208
           DVKKEFCCNGNVVQDKELGKIIQLQGDQRKNVSQFLVQAGIVKKDQIKIHGF
Sbjct: 61  DVKKEFCCNGNVVQDKELGKIIQLQGDQRKNVSQFLVQAGIVKKDQIKIHGF 112

[Close]

BLAST of Carg05625 vs. ExPASy TrEMBL
Match: A0A6J1FPT4 (protein translation factor SUI1 homolog 2-like OS=Cucurbita moschata OX=3662 GN=LOC111445876 PE=3 SV=1)

HSP 1 Score: 228.4 bits (581), Expect = 2.7e-56
Identity = 112/112 (100.00%), Postives = 112/112 (100.00%), Query Frame = 0


Query: 96  MVEIDVQIPSAYDPFADAKDSDAPGGKEYVHIRVQQRNGKKCLTTVQGLKKDFSYEKILK 155
           MVEIDVQIPSAYDPFADAKDSDAPGGKEYVHIRVQQRNGKKCLTTVQGLKKDFSYEKILK
Sbjct: 1   MVEIDVQIPSAYDPFADAKDSDAPGGKEYVHIRVQQRNGKKCLTTVQGLKKDFSYEKILK 60

Query: 156 DVKKEFCCNGNVVQDKELGKIIQLQGDQRKNVSQFLVQAGIVKKDQIKIHGF 208
           DVKKEFCCNGNVVQDKELGKIIQLQGDQRKNVSQFLVQAGIVKKDQIKIHGF
Sbjct: 61  DVKKEFCCNGNVVQDKELGKIIQLQGDQRKNVSQFLVQAGIVKKDQIKIHGF 112

[Close]

BLAST of Carg05625 vs. ExPASy TrEMBL
Match: A0A5D3DHR8 (SUI1 domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold142G001030 PE=3 SV=1)

HSP 1 Score: 226.5 bits (576), Expect = 1.0e-55
Identity = 111/121 (91.74%), Postives = 117/121 (96.69%), Query Frame = 0


Query: 87  VRVLIQTRLMVEIDVQIPSAYDPFADAKDSDAPGGKEYVHIRVQQRNGKKCLTTVQGLKK 146
           V+V IQ+R MVE+D QIPSA+DPFADAKDSDAPG KEYVHIRVQQRNGKKCLTTVQGLKK
Sbjct: 30  VQVSIQSRFMVELDFQIPSAFDPFADAKDSDAPGTKEYVHIRVQQRNGKKCLTTVQGLKK 89

Query: 147 DFSYEKILKDVKKEFCCNGNVVQDKELGKIIQLQGDQRKNVSQFLVQAGIVKKDQIKIHG 206
           +FSYEKILKDVKKEFCCNGNVVQDKELGKIIQLQGDQRKNVSQFLVQAG+VKKDQIKIHG
Sbjct: 90  EFSYEKILKDVKKEFCCNGNVVQDKELGKIIQLQGDQRKNVSQFLVQAGLVKKDQIKIHG 149

Query: 207 F 208
           F
Sbjct: 150 F 150

[Close]

BLAST of Carg05625 vs. ExPASy TrEMBL
Match: A0A0A0K771 (SUI1 domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_7G209580 PE=3 SV=1)

HSP 1 Score: 218.8 bits (556), Expect = 2.2e-53
Identity = 106/112 (94.64%), Postives = 110/112 (98.21%), Query Frame = 0


Query: 96  MVEIDVQIPSAYDPFADAKDSDAPGGKEYVHIRVQQRNGKKCLTTVQGLKKDFSYEKILK 155
           MVE+D QIPSA+DPFADAKDSDAPG KEYVHIRVQQRNGKKCLTTVQGLKK+FSYEKILK
Sbjct: 1   MVELDFQIPSAFDPFADAKDSDAPGTKEYVHIRVQQRNGKKCLTTVQGLKKEFSYEKILK 60

Query: 156 DVKKEFCCNGNVVQDKELGKIIQLQGDQRKNVSQFLVQAGIVKKDQIKIHGF 208
           DVKKEFCCNGNVVQDKELGKIIQLQGDQRKNVSQFLVQAG+VKKDQIKIHGF
Sbjct: 61  DVKKEFCCNGNVVQDKELGKIIQLQGDQRKNVSQFLVQAGLVKKDQIKIHGF 112

[Close]

BLAST of Carg05625 vs. ExPASy TrEMBL
Match: A0A1S3BI45 (protein translation factor SUI1 homolog 1-like OS=Cucumis melo OX=3656 GN=LOC103490142 PE=3 SV=1)

HSP 1 Score: 218.8 bits (556), Expect = 2.2e-53
Identity = 106/112 (94.64%), Postives = 110/112 (98.21%), Query Frame = 0


Query: 96  MVEIDVQIPSAYDPFADAKDSDAPGGKEYVHIRVQQRNGKKCLTTVQGLKKDFSYEKILK 155
           MVE+D QIPSA+DPFADAKDSDAPG KEYVHIRVQQRNGKKCLTTVQGLKK+FSYEKILK
Sbjct: 1   MVELDFQIPSAFDPFADAKDSDAPGTKEYVHIRVQQRNGKKCLTTVQGLKKEFSYEKILK 60

Query: 156 DVKKEFCCNGNVVQDKELGKIIQLQGDQRKNVSQFLVQAGIVKKDQIKIHGF 208
           DVKKEFCCNGNVVQDKELGKIIQLQGDQRKNVSQFLVQAG+VKKDQIKIHGF
Sbjct: 61  DVKKEFCCNGNVVQDKELGKIIQLQGDQRKNVSQFLVQAGLVKKDQIKIHGF 112

[Close]

BLAST of Carg05625 vs. TAIR 10
Match: AT5G54940.1 (Translation initiation factor SUI1 family protein )

HSP 1 Score: 203.8 bits (517), Expect = 1.4e-52
Identity = 96/112 (85.71%), Postives = 106/112 (94.64%), Query Frame = 0


Query: 96  MVEIDVQIPSAYDPFADAKDSDAPGGKEYVHIRVQQRNGKKCLTTVQGLKKDFSYEKILK 155
           MVE+D+QIPSAYDPFA+AKDSDAPG KE +HIR+QQRNGKK LTTVQGLKK++SYE+ILK
Sbjct: 1   MVELDIQIPSAYDPFAEAKDSDAPGAKENIHIRIQQRNGKKSLTTVQGLKKEYSYERILK 60

Query: 156 DVKKEFCCNGNVVQDKELGKIIQLQGDQRKNVSQFLVQAGIVKKDQIKIHGF 208
           D+KK+FCCNGNVVQDKELGKIIQLQGDQRK VSQFLVQ GI KKDQIKIHGF
Sbjct: 61  DLKKDFCCNGNVVQDKELGKIIQLQGDQRKKVSQFLVQTGIAKKDQIKIHGF 112

[Close]

BLAST of Carg05625 vs. TAIR 10
Match: AT5G54940.2 (Translation initiation factor SUI1 family protein )

HSP 1 Score: 203.8 bits (517), Expect = 1.4e-52
Identity = 96/112 (85.71%), Postives = 106/112 (94.64%), Query Frame = 0


Query: 96  MVEIDVQIPSAYDPFADAKDSDAPGGKEYVHIRVQQRNGKKCLTTVQGLKKDFSYEKILK 155
           MVE+D+QIPSAYDPFA+AKDSDAPG KE +HIR+QQRNGKK LTTVQGLKK++SYE+ILK
Sbjct: 1   MVELDIQIPSAYDPFAEAKDSDAPGAKENIHIRIQQRNGKKSLTTVQGLKKEYSYERILK 60

Query: 156 DVKKEFCCNGNVVQDKELGKIIQLQGDQRKNVSQFLVQAGIVKKDQIKIHGF 208
           D+KK+FCCNGNVVQDKELGKIIQLQGDQRK VSQFLVQ GI KKDQIKIHGF
Sbjct: 61  DLKKDFCCNGNVVQDKELGKIIQLQGDQRKKVSQFLVQTGIAKKDQIKIHGF 112

[Close]

BLAST of Carg05625 vs. TAIR 10
Match: AT1G54290.1 (Translation initiation factor SUI1 family protein )

HSP 1 Score: 179.5 bits (454), Expect = 2.8e-45
Identity = 86/113 (76.11%), Postives = 100/113 (88.50%), Query Frame = 0


Query: 96  MVEIDVQIPSAYDPFADAKDSDAPGG-KEYVHIRVQQRNGKKCLTTVQGLKKDFSYEKIL 155
           M +++VQ+P+A+DPFADA   D+  G KEYVHIRVQQRNG+K LTTVQGLKK++SY KIL
Sbjct: 1   MSDLEVQVPTAFDPFADANAEDSGAGTKEYVHIRVQQRNGRKSLTTVQGLKKEYSYSKIL 60

Query: 156 KDVKKEFCCNGNVVQDKELGKIIQLQGDQRKNVSQFLVQAGIVKKDQIKIHGF 208
           KD+KKEFCCNG VVQD ELG++IQLQGDQRKNVS FLVQAG+VKKD IKIHGF
Sbjct: 61  KDLKKEFCCNGTVVQDSELGQVIQLQGDQRKNVSTFLVQAGLVKKDNIKIHGF 113

[Close]

BLAST of Carg05625 vs. TAIR 10
Match: AT4G27130.1 (Translation initiation factor SUI1 family protein )

HSP 1 Score: 179.5 bits (454), Expect = 2.8e-45
Identity = 87/113 (76.99%), Postives = 99/113 (87.61%), Query Frame = 0


Query: 96  MVEIDVQIPSAYDPFADAKDSDAPGG-KEYVHIRVQQRNGKKCLTTVQGLKKDFSYEKIL 155
           M E+D Q+P+A+DPFADA   D+  G KEYVHIRVQQRNG+K LTTVQGLKK++SY KIL
Sbjct: 1   MSELDSQVPTAFDPFADANAEDSGAGTKEYVHIRVQQRNGRKSLTTVQGLKKEYSYTKIL 60

Query: 156 KDVKKEFCCNGNVVQDKELGKIIQLQGDQRKNVSQFLVQAGIVKKDQIKIHGF 208
           KD+KKEFCCNG VVQD ELG++IQLQGDQRKNVS FLVQAG+VKKD IKIHGF
Sbjct: 61  KDLKKEFCCNGTVVQDSELGQVIQLQGDQRKNVSTFLVQAGLVKKDNIKIHGF 113

[Close]

BLAST of Carg05625 vs. TAIR 10
Match: AT5G54760.1 (Translation initiation factor SUI1 family protein )

HSP 1 Score: 179.1 bits (453), Expect = 3.6e-45
Identity = 87/113 (76.99%), Postives = 99/113 (87.61%), Query Frame = 0


Query: 96  MVEIDVQIPSAYDPFADAKDSDAPGG-KEYVHIRVQQRNGKKCLTTVQGLKKDFSYEKIL 155
           M E+D Q+P+A+DPFADA   D+  G KEYVHIRVQQRNG+K LTTVQGLKK++SY KIL
Sbjct: 1   MSELDSQVPTAFDPFADANVEDSGAGTKEYVHIRVQQRNGRKSLTTVQGLKKEYSYTKIL 60

Query: 156 KDVKKEFCCNGNVVQDKELGKIIQLQGDQRKNVSQFLVQAGIVKKDQIKIHGF 208
           KD+KKEFCCNG VVQD ELG++IQLQGDQRKNVS FLVQAG+VKKD IKIHGF
Sbjct: 61  KDLKKEFCCNGTVVQDSELGQVIQLQGDQRKNVSTFLVQAGLVKKDNIKIHGF 113

The following BLAST results are available for this feature:

BLAST of Carg05625 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG7015195.1	5.0e-113	100.00	Protein translation factor SUI1-like 1, partial [Cucurbita argyrosperma subsp. a...	[more]
KAG6607799.1	8.9e-62	98.40	AUGMIN subunit 4, partial [Cucurbita argyrosperma subsp. sororia]	[more]
XP_022940170.1	5.6e-56	100.00	protein translation factor SUI1 homolog 2-like [Cucurbita moschata] >XP_02298165...	[more]
KAA0025154.1	2.1e-55	91.74	SUI1 domain-containing protein [Cucumis melo var. makuwa] >TYK23112.1 SUI1 domai...	[more]
KAF3453464.1	1.5e-53	94.64	hypothetical protein FNV43_RR03904 [Rhamnella rubrinervis]	[more]

BLAST of Carg05625 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
P41568	3.9e-44	76.99	Protein translation factor SUI1 homolog 1 OS=Arabidopsis thaliana OX=3702 GN=At4...	[more]
Q94JV4	3.9e-44	76.11	Protein translation factor SUI1 homolog 2 OS=Arabidopsis thaliana OX=3702 GN=At1...	[more]
P56330	6.7e-44	73.91	Protein translation factor SUI1 homolog OS=Zea mays OX=4577 GN=TIF PE=3 SV=1	[more]
A6MZM2	6.7e-44	73.91	Protein translation factor SUI1 homolog OS=Oryza sativa subsp. indica OX=39946 G...	[more]
Q0D5W6	6.7e-44	73.91	Protein translation factor SUI1 homolog OS=Oryza sativa subsp. japonica OX=39947...	[more]

BLAST of Carg05625 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1IX56	2.7e-56	100.00	protein translation factor SUI1 homolog 2-like OS=Cucurbita maxima OX=3661 GN=LO...	[more]
A0A6J1FPT4	2.7e-56	100.00	protein translation factor SUI1 homolog 2-like OS=Cucurbita moschata OX=3662 GN=...	[more]
A0A5D3DHR8	1.0e-55	91.74	SUI1 domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_s...	[more]
A0A0A0K771	2.2e-53	94.64	SUI1 domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_7G209580 PE=3 S...	[more]
A0A1S3BI45	2.2e-53	94.64	protein translation factor SUI1 homolog 1-like OS=Cucumis melo OX=3656 GN=LOC103...	[more]

BLAST of Carg05625 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G54940.1	1.4e-52	85.71	Translation initiation factor SUI1 family protein	[more]
AT5G54940.2	1.4e-52	85.71	Translation initiation factor SUI1 family protein	[more]
AT1G54290.1	2.8e-45	76.11	Translation initiation factor SUI1 family protein	[more]
AT4G27130.1	2.8e-45	76.99	Translation initiation factor SUI1 family protein	[more]
AT5G54760.1	3.6e-45	76.99	Translation initiation factor SUI1 family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Silver-seed gourd (SMH-JMG-627) v2
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001950	SUI1 domain	PFAM	PF01253	SUI1	coord: 122..196 e-value: 1.7E-23 score: 82.9
IPR001950	SUI1 domain	PROSITE	PS50296	SUI1	coord: 125..195 score: 22.878408
None	No IPR available	GENE3D	3.30.780.10		coord: 90..207 e-value: 3.5E-44 score: 152.1
None	No IPR available	PANTHER	PTHR10388:SF56	BNAA10G09260D PROTEIN	coord: 96..207
None	No IPR available	PANTHER	PTHR10388	EUKARYOTIC TRANSLATION INITIATION FACTOR SUI1	coord: 96..207
IPR005874	Eukaryotic translation initiation factor SUI1	TIGRFAM	TIGR01160	TIGR01160	coord: 100..207 e-value: 1.5E-50 score: 168.4
IPR005874	Eukaryotic translation initiation factor SUI1	CDD	cd11566	eIF1_SUI1	coord: 123..206 e-value: 3.18726E-51 score: 158.467
IPR036877	SUI1 domain superfamily	SUPERFAMILY	55159	eIF1-like	coord: 97..207

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Carg05625-RA	Carg05625-RA	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006413	translational initiation
cellular_component	GO:0016021	integral component of membrane
molecular_function	GO:0003743	translation initiation factor activity