Carg05524 (gene) Silver-seed gourd (SMH-JMG-627) v2

Overview
NameCarg05524
Typegene
OrganismCucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
DescriptionUnknown protein
LocationCarg_Chr17: 1986003 .. 1987602 (+)
RNA-Seq ExpressionCarg05524
SyntenyCarg05524
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
AGTGTGGTGGGGTTGGAGAAAACCACTTTCAAAGTTATGGTTTACTGGTGTAGTTACTCGGATGCCCTTTTCATATATTAGGGGAGATTAGATACGAACCTTCTGTTCTGCCAAGTGCTGCCATGAAGATTACTTGAAGCCTGCCAGCCTCATTTTGGGTTCGGAAAGTAACAAGGTAAAGGTTTCTTCTTCTTTTTTTTTTTTTTTTTTAATTATTAATAATTGCTGCTATGCATTATGGACTAGTAGTAATGATGATTTGGAAACGGATTTTTTTTTTTAAAAAAAAAAACTAAAAAAGTTTTATGCAAAACATTATTTCCCAAATAATTTTTAGAGATTTGTTTTATAAAACGATAGGAAAAATAAAGGAAAAGAAAAAAAAAAACTGTTGTTTACAATGATCTTATTCTATCGAATCTCTACGTGAAATGTTTTTGAAAACTTAAAAAGGATCAAAACAAGATTTTAATGTAATAATTATCTAAGAAATTACTTGAGAGGATCAGATACATCAATACTGTTAACATTTTTATCTTCTCGTTTATATCATAGAGATTCAAGCAAACCACTTTATGAAATTATTTATTTACATTTCGTAATTGCTGCTTGATACATCTCTTTCAAGTTGGTTGATCAACAATTCTATCATCTTTTTGTACATTGGCATGTAATGATCGTTTATCATTGTTCTAGAGAGACGCAGCTTACCGTACAATCCTCTCGGCGTCTCGTATATGCCAACTCTTTCCTGCACAATCTCATTGTCATGAACGAAACTATTATCAGAATCCGATGAGGGGACCGAAACAATATGCATGGTTTTTCCAGGAGGATAGAACCGAATGTTTTCCGAAGCGTCGAGAGAAGACAATGGCTTTTCACTGCTGCCCTCGACTTCGGTAAGCATACTCTCCTCTTCTTCTACGATTTCTTTGGCTACTGCAGCCACATTGGCTTCTCGAGTAATAACGTCGGTGGTGGTCTTGGTCTTTTTCTCCTGTCGCTGCAGTTCCTTCTCCAGTTCGTACCACAACTCACCATCGGTGATGTCGTCAACATCGGTTGAGGAGGCAACGGTTTTATCTTCGTTGATTAGGTGGTGCCGCTCGTCATCGGTGTCGTGATCTGAACTATCATCATCACCCAAAGAGCTAGAGCCAGACTCTAGCTTCTTTTTCTTTAGAATTGTGTTATTAGTTGTAACTTCATCATCAGCAATGAGTGATTCGTGTTTTCTTTCAGTTCTCAGAGGGGCTTCAGGCAACTCCTCTGTGGGATTGGGTAAAAGGCCTCCGTTTCTTCTGCGGGCGCCCATGCAAGACCAGGAAGCCAGAGAGGAGCGAGTTCTCACAACCGCACTTTTCACGGCAGTCTAAAAAACAACGTCAATGCCAAATCAAACAACTAATAACAGATTTGTTCCTTTTATTTATTATTCTTATTATTATTATTATTTAGTTCTTGATGAAGAAAGAAGAGTGAAGAAACCTGGGTGGTGGTAGAGACTGGGCGGAGAAGGGCGCCGGCGCCGGCGACTTTAGCTTTGGCAGTAGCTATGGATGGAAGGCGTGAGCCCAGAGCACTCGCAGAGCGGTAG

mRNA sequence

AGTGTGGTGGGGTTGGAGAAAACCACTTTCAAAGTTATGGTTTACTGGTGTAGTTACTCGGATGCCCTTTTCATATATTAGGGGAGATTAGATACGAACCTTCTGTTCTGCCAAGTGCTGCCATGAAGATTACTTGAAGCCTGCCAGCCTCATTTTGGGTTCGGAAAGTAACAAGAGAGACGCAGCTTACCGTACAATCCTCTCGGCGTCTCGTATATGCCAACTCTTTCCTGCACAATCTCATTGTCATGAACGAAACTATTATCAGAATCCGATGAGGGGACCGAAACAATATGCATGGTTTTTCCAGGAGGATAGAACCGAATGTTTTCCGAAGCGTCGAGAGAAGACAATGGCTTTTCACTGCTGCCCTCGACTTCGTTCCTTCTCCAGTTCGTACCACAACTCACCATCGGTGATGTCGTCAACATCGGTTGAGGAGGCAACGTTCTCAGAGGGGCTTCAGGCAACTCCTCTGTGGGATTGGGTAAAAGGCCTCCGTTTCTTCTGCGGGCGCCCATGCAAGACCAGGAAGCCAGAGAGGAGCGAAAAGAAGAGTGAAGAAACCTGGGTGGTGGTAGAGACTGGGCGGAGAAGGGCGCCGGCGCCGGCGACTTTAGCTTTGGCAGTAGCTATGGATGGAAGGCGTGAGCCCAGAGCACTCGCAGAGCGGTAG

Coding sequence (CDS)

ATGAGGGGACCGAAACAATATGCATGGTTTTTCCAGGAGGATAGAACCGAATGTTTTCCGAAGCGTCGAGAGAAGACAATGGCTTTTCACTGCTGCCCTCGACTTCGTTCCTTCTCCAGTTCGTACCACAACTCACCATCGGTGATGTCGTCAACATCGGTTGAGGAGGCAACGTTCTCAGAGGGGCTTCAGGCAACTCCTCTGTGGGATTGGGTAAAAGGCCTCCGTTTCTTCTGCGGGCGCCCATGCAAGACCAGGAAGCCAGAGAGGAGCGAAAAGAAGAGTGAAGAAACCTGGGTGGTGGTAGAGACTGGGCGGAGAAGGGCGCCGGCGCCGGCGACTTTAGCTTTGGCAGTAGCTATGGATGGAAGGCGTGAGCCCAGAGCACTCGCAGAGCGGTAG

Protein sequence

MRGPKQYAWFFQEDRTECFPKRREKTMAFHCCPRLRSFSSSYHNSPSVMSSTSVEEATFSEGLQATPLWDWVKGLRFFCGRPCKTRKPERSEKKSEETWVVVETGRRRAPAPATLALAVAMDGRREPRALAER
Homology
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BLAST of Carg05524 vs. NCBI nr
Match: KAG7013659.1 (hypothetical protein SDJN02_23826 [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 275.8 bits (704), Expect = 2.0e-70
Identity = 133/133 (100.00%), Postives = 133/133 (100.00%), Query Frame = 0 

Query: 1   MRGPKQYAWFFQEDRTECFPKRREKTMAFHCCPRLRSFSSSYHNSPSVMSSTSVEEATFS 60
           MRGPKQYAWFFQEDRTECFPKRREKTMAFHCCPRLRSFSSSYHNSPSVMSSTSVEEATFS
Sbjct: 1   MRGPKQYAWFFQEDRTECFPKRREKTMAFHCCPRLRSFSSSYHNSPSVMSSTSVEEATFS 60

Query: 61  EGLQATPLWDWVKGLRFFCGRPCKTRKPERSEKKSEETWVVVETGRRRAPAPATLALAVA 120
           EGLQATPLWDWVKGLRFFCGRPCKTRKPERSEKKSEETWVVVETGRRRAPAPATLALAVA
Sbjct: 61  EGLQATPLWDWVKGLRFFCGRPCKTRKPERSEKKSEETWVVVETGRRRAPAPATLALAVA 120

Query: 121 MDGRREPRALAER 134
           MDGRREPRALAER
Sbjct: 121 MDGRREPRALAER 133

The following BLAST results are available for this feature:
BLAST of Carg05524 vs. NCBI nr
Match NameE-valueIdentityDescription
KAG7013659.12.0e-70100.00hypothetical protein SDJN02_23826 [Cucurbita argyrosperma subsp. argyrosperma][more]
BLAST of Carg05524 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of Carg05524 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of Carg05524 vs. NCBI nr
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Carg05524-RACarg05524-RAmRNA