Carg05481 (gene) Silver-seed gourd (SMH-JMG-627) v2

Overview
NameCarg05481
Typegene
OrganismCucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
DescriptionUDP-N-acetylmuramoylalanine--D-glutamate ligase
LocationCarg_Chr17: 1698262 .. 1703157 (-)
RNA-Seq ExpressionCarg05481
SyntenyCarg05481
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
TGTTGGGCCTATTTCGAAACGCCGTCCCTAATAAAATCGATGGTTGTCGGTTGAGAACTTGAGAACGGAAAATAACAAATTTTCTCTCTGAAGCCGCTGGACGTCGCCGCTGTTTTCTCCGTAGCTTGAGCTCTGTAAGTATCTCTGAAGCGTCGAGGCATAAACCACTCTGTTTTCTTTTGGAAATTACAATGGATTCCGTTTTATAATCATGTTAATGCGTTTTGTTTTTGGATTCTCAGTTGAAATGAAGTTTCTAGGTTGGTATGTGAAGATTGGGACAGTTTCGGCTTTGATTGGAGCTTCCATGGAAATGTTCATGATTAAAACGGGCTTCTGTGTGAGAACTCTCCTTCTTCTTCCTTATTCCTTAATTCACCATTTTAAATTCTTTTTCTTCACTGTATTTAGTTGATGTGCTTGTTGTAATGGCTTTTTCGTCTTCATTTAGGTCTGTCTTTCGATAAATCTTATAGAATTGATTCGCTACGAGGATCGGAGGTGTTTGGTTAATAGTTCTTTACAATTTTTTTATGCTTTATGTCTAAGTAGATTGAAGAAATCTTGCTTTTCAATGAATGTCCACTAACGTTAGATTTTTCGTGTTCGAGACCACGAAGTAAGTAAGTGGTATTGAGTGGAAATTGTAACGAGCCACATGCTTCATGGGAATTCCCAACAGTTGTGGCAGCTGCTATTAATCTAACTGATAGTGATAAAACGTATTAGAATCCTGGATGTGCTTTCTTCAAATGTTTCATAGCTCTCCTAATTTAGTCTTTCTTCTTATTGTCTGAGTTGTTTCTACATATTTCTTGATTTGCCTCTTATTCTTCTTGTCCAAGTTCCTTATTAAAACCATCTTCTCTCATTCAAAGAAGGGAAGGTGTCGACAACTTGGGCACACAACTCAATTGGTTAACACATTGAATTATCGACCAAAATGTCAAAGGTTTGAATTCCTGCCCACATTGGTGTGTCATATCCATGAAAAATGCAGAAATTCCGAGCCAGCTCTTCATGACTTACCCCTTTGCCTATAGTTTATGGTCTTCATGAAAGGAAGCATTTGAATGGGCCATGACCCCAAGCTGCATTCATGACTTTCTTGCACTCATTATGTTGGGCCACCCTTTCAGAGGAGAGAAGAACAACAAGTATACAAGCTAGCAGTCTCCCACTATCTTAAACAATTGGAAAACTTTCTTGTAGTTTTATTTATGGGAAGGGGTTTAATAAATGTCATGTCATTTTTTATCTAAAGAAACGAAAAAGTTAGCAGCCTCCTAGATGAGCAAAACCACTAGAATCATCTGAAATCTTTCCCACTGATAAGAGGAGAGCAGATAAAAGACTTAAACCGCCACAACCCACCAAACAAACAAGCAAAATCAGCAAAGCTAGTTGAGAGTGGGACTCTTCAACCGGACTAGAACACCCATACCAAACCAACCAAGGCACTGGAGAACCTTAAACCTTGAGAGACAAACACTTTTCTTTTTTAATGGATTCTTAAATATAAGAAAGTACTGATTCATTGGTGCATGCACACGTTGAGATTGATTTAATTGTAAACACCGTGAATCAGACTGAGCCTCTGTCTTCGTCCTCTGTTTCATGAGAAAGGAAAAATTTTGTTGCAAGCTGGGGCGTGTGCCATTGTTGGGGGTCTTTGAGGAGAAAGAAACAATAGTATTTTTAGAGGATATGAGAGACCTTTGAATGAGGTTGGGCCCTGTACTAGGCTCGATGGTTCCTTCTAGGCGTTTGGGGCTAAACCTATTGTAATTATTTATTAGGTCTTGTTGGATTGGAGCCCGTTCTTGTAGGTTACCTCCCTTCTTTTGTGGGCTCGTCTTTTTTGTATGCTCTTGTATTCTTTCATTTTTCCTCAATGAATGTTCAGTAATTCATTAAGGAAAAATACTAGTTTTTTTTTTTTTAACAAGTAAGAAAGTACTACTTATGAGTAATAAGGAAGTACTGATTCAATCGCGCTCTTTTGAAGTCAGTTTCTTGTTTGATGGCCTGTTGATTGGTATATGATGTTGTCTCTATTTTGCCTTTGCATCGTCAGATGATAAAGTAACAGTTTTGGAATCGGAGAAGATAGCTTGGGAAAACTCGCCTGAGGCTCAAGCAATTAGAGAAGCCCTTAATCCTTGGAGGAATCACGATGCTGCTGAAGAGGCCAGGAAAGACACCTAATGCTTCAACTGTTGACCGGAGTAGCTGCTTTGCAAGGTTTGTTCATCATTCCATCCTTATAATCAGCCTAACTGAGGTTGAAATCATTTTTTGGTTTTTTTTTTCCCACCCAAAATGGATGTCTGACATACTGTTTAAAAATTTTAAAACTGAGGTTGAGATCGGCATTTTTAAAATTCAACTGCTTGACAAAAGCTATAGAAATCAAACGGAATGCACTGAAACCAACCAAAGCCTTATCGAAAGTATACTGATTAGATTTCTGCTTTATACCTTAGAAAACCAAACATTGCTGAAACAATGGAACCCACTCACGGTTAGAAATCACAACTCTCCATAATAGTATGATATTGTCCACTTTGAGCATATGCTCTCATGGCTTTGTTTTTGGTTTTCCCAAAAGGCCTCATACCAATGGAGATGTATTCCTTACTTATAAACCTATGATCAACCCCTTAATGAGCCGATATGGGACTCCTCTCCCAACAATCCCCAACAATCCTCCTCTCGAACAAAGTACACCATAAAGCCTCCATTGAAGCCTATTGGAGCCCTCAAACAACCTCCCCTTAATCGAGGCTCGACTCCTTCTCTGGAGCCCTCAAACAAAGTACACCATTTGTTTGAAACTTGAGTCACTTTTGACTACACCTTCGAGACTCACAATTTCTTTGTTACGATATTTAAGGATTCTATTAACATGGCGGTTCAATTAGTTTTTTTAGGTTTTTTTTTCTTTCTATTCTAAGGGCCCCTATGCCTTGACTCGATATTCGAGTGAGCTTGTTTGATTGCCTGGTTTCTTATACAGAAAAACCACGACTTTTTAAAACAAACAAACAAGGCCAATGTTGTAGCAGGAAAATCAAAATGTACTAATCAAGATTCAAAGTGGGATCAACAATGTTGGAGTTTGATTTGGAACTTCCCCCCCCCCTTTTTATAGGAAACTTAGAAATATATATCACTTCAAGGAAGAAGATGAGAGAACAACTTAGGATCCAGGAGTAAATGTGTGAAAAGTTAGTGCAAACTTAAATTAATTTTCATTAGTCATTTTTTACTTATTAGAAATGAATGTTAGCTGCACTTATGGCTTGTAATTAGGAAAGATGTTAGTTGCACTTATGGTCCATAGGTCGGTCTAGTGATCATTGGAGGAAGTAATGGAAGCACGATGATTATAAAAAAATGAGATCAAATCCCATAAACCTACCTAAGATATCACAAACAGGTGAGTTTTTTGATTACCAAATTTTGCTGGGTCAGGTAGTCAATATACATAGTCTAGTTCAAACGCGCACAAATTTTTTATAATCTCTTATAAAATGCTAAGTAACTGTTGCATTTGAAACAACTCCGACCCATCAAAACTTCTTAATGGAACCAACTTTGTGAAGGAATCAACTGTTAAATTCGCGTCCCATGAGATTAGTCAAGATGCACGTAACTAGGTTTAAGAAAGACATTTGAAAACAAAAACTACTCATTAAAGCTCTGGTTGAACAAAATTTCTTCCTAACTCTCAATTTGGCCTTCCAAACCATGTTGATTTCTTTCTAAGTCTAACCATAAGCCCCAAACGAAGACTCTGACCTTGTTGATCCATAAGACTTTAACCTGCATCCACATAGAAGACTATCCCATGAACAACCAAATCACTGTAACACTTCCTCCAAAATTTTTCTAATGAATGAACAATGAAAGAACAAATTGTGGCTTTAGGATATTCGAACTTCAAACGAACATACCTACAATGATCCTACCATTGTTTTTAAGACATGAACCGACACTCTGTTCATTTACATCGGTATACAAGAACTCTCTTCTTACAAAAACCCTCATTGCCACAGTATTTAGCGGTTTCTTCTTGTCGGTTTTGCAGGTTGAGAACGAAATTACAGGGGAGTAGGAGATACGAGCTCCGGCTTTTAAGTTTCACCTAATAAGATGGGGGATTTTAGTAAGCTGTTTCTTTATGACATTTGAGGTCTTCTTATGATTGATTCCATATTAAAGTTGAATGATATCACCAAACCAAAGGTCTGATAATTCAATTCATTAACAATCTCTTATGGTAGAAATGACAGATTTTCATATAGTCTGATACCCATATTAGAGTTGAATCATAATCCCATATTCAGGTCTGTCATTCTGATTCAACTTAACTCATCATGCCTTCTGGAATATAGTCCTTAGGTTGTTATACGTCGTGACTCGAAACCTACCAGATGATTTGACTATGTTATGCAGTACACACCATTGTTGAAAATATTTCTTAGGTGAAAGAAAAAGAATGTCTAACAATCAGCCTGAATCTTATTTTGGTCAAACTTTCACACTATCCAAATTTACTTTTTACTTACTACTAATATTGTCTTCATTCTTGAATTTATCATGAAACCTCATTTTGGTCTTTGTAGTGCGTTTTGTAGAAAATCTTACATGATACTAAGTGGACTAGAGTCTTTGATCAGATAGTAGTTATATGTATATATGCTTATGCCATGTAAACACGTAACAGTAGGAATAAGAATAGATTATTGTGAACGAGAATCTGCTCGGAATGACTTTTTATAGTCTTTTCTATTATAAAATAGTTGTAACGGTCGGTGAATATGTGTAATAACTCAAGCCTACCACTAGCAGATATTGATCTTTTTGGCTTTCCCTTTCGGGCTTTCATTC

mRNA sequence

TGTTGGGCCTATTTCGAAACGCCGTCCCTAATAAAATCGATGGTTGTCGGTTGAGAACTTGAGAACGGAAAATAACAAATTTTCTCTCTGAAGCCGCTGGACGTCGCCGCTGTTTTCTCCGTAGCTTGAGCTCTTTGAAATGAAGTTTCTAGGTTGGTATGTGAAGATTGGGACAGTTTCGGCTTTGATTGGAGCTTCCATGGAAATGTTCATGATTAAAACGGGCTTCTGTATTGAAGAAATCTTGCTTTTCAATGAATGTCCACTAACGTTAGATTTTTCGTGTTCGAGACCACGAAATGATAAAGTAACAGTTTTGGAATCGGAGAAGATAGCTTGGGAAAACTCGCCTGAGGCTCAAGCAATTAGAGAAGCCCTTAATCCTTGGAGGAATCACGATGCTGCTGAAGAGGCCAGGAAAGACACCTAATGCTTCAACTGTTGACCGGAGTAGCTGCTTTGCAAGGTTGAGAACGAAATTACAGGGGAGTAGGAGATACGAGCTCCGGCTTTTAAGTTTCACCTAATAAGATGGGGGATTTTAGTAAGCTGTTTCTTTATGACATTTGAGGTCTTCTTATGATTGATTCCATATTAAAGTTGAATGATATCACCAAACCAAAGGTCTGATAATTCAATTCATTAACAATCTCTTATGGTAGAAATGACAGATTTTCATATAGTCTGATACCCATATTAGAGTTGAATCATAATCCCATATTCAGGTCTGTCATTCTGATTCAACTTAACTCATCATGCCTTCTGGAATATAGTCCTTAGGTTGTTATACGTCGTGACTCGAAACCTACCAGATGATTTGACTATGTTATGCAGTACACACCATTGTTGAAAATATTTCTTAGGTGAAAGAAAAAGAATGTCTAACAATCAGCCTGAATCTTATTTTGGTCAAACTTTCACACTATCCAAATTTACTTTTTACTTACTACTAATATTGTCTTCATTCTTGAATTTATCATGAAACCTCATTTTGGTCTTTGTAGTGCGTTTTGTAGAAAATCTTACATGATACTAAGTGGACTAGAGTCTTTGATCAGATAGTAGTTATATGTATATATGCTTATGCCATGTAAACACGTAACAGTAGGAATAAGAATAGATTATTGTGAACGAGAATCTGCTCGGAATGACTTTTTATAGTCTTTTCTATTATAAAATAGTTGTAACGGTCGGTGAATATGTGTAATAACTCAAGCCTACCACTAGCAGATATTGATCTTTTTGGCTTTCCCTTTCGGGCTTTCATTC

Coding sequence (CDS)

ATGAAGTTTCTAGGTTGGTATGTGAAGATTGGGACAGTTTCGGCTTTGATTGGAGCTTCCATGGAAATGTTCATGATTAAAACGGGCTTCTGTATTGAAGAAATCTTGCTTTTCAATGAATGTCCACTAACGTTAGATTTTTCGTGTTCGAGACCACGAAATGATAAAGTAACAGTTTTGGAATCGGAGAAGATAGCTTGGGAAAACTCGCCTGAGGCTCAAGCAATTAGAGAAGCCCTTAATCCTTGGAGGAATCACGATGCTGCTGAAGAGGCCAGGAAAGACACCTAA

Protein sequence

MKFLGWYVKIGTVSALIGASMEMFMIKTGFCIEEILLFNECPLTLDFSCSRPRNDKVTVLESEKIAWENSPEAQAIREALNPWRNHDAAEEARKDT
Homology
[Close]
BLAST of Carg05481 vs. NCBI nr
Match: KAG7013616.1 (hypothetical protein SDJN02_23783 [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 197.2 bits (500), Expect = 6.4e-47
Identity = 96/96 (100.00%), Postives = 96/96 (100.00%), Query Frame = 0 

Query: 1  MKFLGWYVKIGTVSALIGASMEMFMIKTGFCIEEILLFNECPLTLDFSCSRPRNDKVTVL 60
          MKFLGWYVKIGTVSALIGASMEMFMIKTGFCIEEILLFNECPLTLDFSCSRPRNDKVTVL
Sbjct: 1  MKFLGWYVKIGTVSALIGASMEMFMIKTGFCIEEILLFNECPLTLDFSCSRPRNDKVTVL 60

Query: 61 ESEKIAWENSPEAQAIREALNPWRNHDAAEEARKDT 97
          ESEKIAWENSPEAQAIREALNPWRNHDAAEEARKDT
Sbjct: 61 ESEKIAWENSPEAQAIREALNPWRNHDAAEEARKDT 96

[Close]
BLAST of Carg05481 vs. NCBI nr
Match: XP_023548311.1 (uncharacterized protein LOC111806987 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 132.1 bits (331), Expect = 2.5e-27
Identity = 72/96 (75.00%), Postives = 72/96 (75.00%), Query Frame = 0 

Query: 1  MKFLGWYVKIGTVSALIGASMEMFMIKTGFCIEEILLFNECPLTLDFSCSRPRNDKVTVL 60
          MKFLGWYVKIGTVSALIGASMEMFMIKTGF                        DKVTVL
Sbjct: 6  MKFLGWYVKIGTVSALIGASMEMFMIKTGF-----------------------YDKVTVL 65

Query: 61 ESEKIAWENSPEAQAIREALNPWRNHDAAEEARKDT 97
          ESEKIAWENSPEAQAIREALNPWRNHDAAEEARKDT
Sbjct: 66 ESEKIAWENSPEAQAIREALNPWRNHDAAEEARKDT 78

[Close]
BLAST of Carg05481 vs. NCBI nr
Match: XP_022959449.1 (uncharacterized protein LOC111460420 [Cucurbita moschata] >XP_022959450.1 uncharacterized protein LOC111460420 [Cucurbita moschata] >KAG6575042.1 hypothetical protein SDJN03_25681, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 132.1 bits (331), Expect = 2.5e-27
Identity = 72/96 (75.00%), Postives = 72/96 (75.00%), Query Frame = 0 

Query: 1  MKFLGWYVKIGTVSALIGASMEMFMIKTGFCIEEILLFNECPLTLDFSCSRPRNDKVTVL 60
          MKFLGWYVKIGTVSALIGASMEMFMIKTGF                        DKVTVL
Sbjct: 1  MKFLGWYVKIGTVSALIGASMEMFMIKTGF-----------------------YDKVTVL 60

Query: 61 ESEKIAWENSPEAQAIREALNPWRNHDAAEEARKDT 97
          ESEKIAWENSPEAQAIREALNPWRNHDAAEEARKDT
Sbjct: 61 ESEKIAWENSPEAQAIREALNPWRNHDAAEEARKDT 73

[Close]
BLAST of Carg05481 vs. NCBI nr
Match: XP_023006006.1 (uncharacterized protein LOC111498883 [Cucurbita maxima])

HSP 1 Score: 132.1 bits (331), Expect = 2.5e-27
Identity = 72/96 (75.00%), Postives = 72/96 (75.00%), Query Frame = 0 

Query: 1  MKFLGWYVKIGTVSALIGASMEMFMIKTGFCIEEILLFNECPLTLDFSCSRPRNDKVTVL 60
          MKFLGWYVKIGTVSALIGASMEMFMIKTGF                        DKVTVL
Sbjct: 11 MKFLGWYVKIGTVSALIGASMEMFMIKTGF-----------------------YDKVTVL 70

Query: 61 ESEKIAWENSPEAQAIREALNPWRNHDAAEEARKDT 97
          ESEKIAWENSPEAQAIREALNPWRNHDAAEEARKDT
Sbjct: 71 ESEKIAWENSPEAQAIREALNPWRNHDAAEEARKDT 83

[Close]
BLAST of Carg05481 vs. NCBI nr
Match: XP_038906919.1 (uncharacterized protein LOC120092786 [Benincasa hispida])

HSP 1 Score: 124.8 bits (312), Expect = 4.1e-25
Identity = 69/96 (71.88%), Postives = 70/96 (72.92%), Query Frame = 0 

Query: 1  MKFLGWYVKIGTVSALIGASMEMFMIKTGFCIEEILLFNECPLTLDFSCSRPRNDKVTVL 60
          MKFLGWYVKIGTVSALIGASMEMFMIKTGF                        DKVTVL
Sbjct: 1  MKFLGWYVKIGTVSALIGASMEMFMIKTGF-----------------------YDKVTVL 60

Query: 61 ESEKIAWENSPEAQAIREALNPWRNHDAAEEARKDT 97
          ESEK+AWENSPEAQAIREALNPWRN DAA EARKDT
Sbjct: 61 ESEKLAWENSPEAQAIREALNPWRNIDAAAEARKDT 73

[Close]
BLAST of Carg05481 vs. ExPASy TrEMBL
Match: A0A6J1H837 (uncharacterized protein LOC111460420 OS=Cucurbita moschata OX=3662 GN=LOC111460420 PE=4 SV=1)

HSP 1 Score: 132.1 bits (331), Expect = 1.2e-27
Identity = 72/96 (75.00%), Postives = 72/96 (75.00%), Query Frame = 0 

Query: 1  MKFLGWYVKIGTVSALIGASMEMFMIKTGFCIEEILLFNECPLTLDFSCSRPRNDKVTVL 60
          MKFLGWYVKIGTVSALIGASMEMFMIKTGF                        DKVTVL
Sbjct: 1  MKFLGWYVKIGTVSALIGASMEMFMIKTGF-----------------------YDKVTVL 60

Query: 61 ESEKIAWENSPEAQAIREALNPWRNHDAAEEARKDT 97
          ESEKIAWENSPEAQAIREALNPWRNHDAAEEARKDT
Sbjct: 61 ESEKIAWENSPEAQAIREALNPWRNHDAAEEARKDT 73

[Close]
BLAST of Carg05481 vs. ExPASy TrEMBL
Match: A0A6J1KWK7 (uncharacterized protein LOC111498883 OS=Cucurbita maxima OX=3661 GN=LOC111498883 PE=4 SV=1)

HSP 1 Score: 132.1 bits (331), Expect = 1.2e-27
Identity = 72/96 (75.00%), Postives = 72/96 (75.00%), Query Frame = 0 

Query: 1  MKFLGWYVKIGTVSALIGASMEMFMIKTGFCIEEILLFNECPLTLDFSCSRPRNDKVTVL 60
          MKFLGWYVKIGTVSALIGASMEMFMIKTGF                        DKVTVL
Sbjct: 11 MKFLGWYVKIGTVSALIGASMEMFMIKTGF-----------------------YDKVTVL 70

Query: 61 ESEKIAWENSPEAQAIREALNPWRNHDAAEEARKDT 97
          ESEKIAWENSPEAQAIREALNPWRNHDAAEEARKDT
Sbjct: 71 ESEKIAWENSPEAQAIREALNPWRNHDAAEEARKDT 83

[Close]
BLAST of Carg05481 vs. ExPASy TrEMBL
Match: A0A5A7SQJ1 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold111G001150 PE=4 SV=1)

HSP 1 Score: 118.2 bits (295), Expect = 1.8e-23
Identity = 64/95 (67.37%), Postives = 69/95 (72.63%), Query Frame = 0 

Query: 1   MKFLGWYVKIGTVSALIGASMEMFMIKTGFCIEEILLFNECPLTLDFSCSRPRNDKVTVL 60
           MKFLGWYVKIGTVSALIGASME+FMIKTGF                        DKVTV+
Sbjct: 90  MKFLGWYVKIGTVSALIGASMELFMIKTGF-----------------------YDKVTVI 149

Query: 61  ESEKIAWENSPEAQAIREALNPWRNHDAAEEARKD 96
           ESE++AWENSPEAQAIREALNPWRN DAA EAR+D
Sbjct: 150 ESERLAWENSPEAQAIREALNPWRNGDAAAEARQD 161

[Close]
BLAST of Carg05481 vs. ExPASy TrEMBL
Match: A0A5A7QYM4 (UDP-N-acetylmuramoylalanine--D-glutamate ligase OS=Striga asiatica OX=4170 GN=STAS_27425 PE=4 SV=1)

HSP 1 Score: 116.7 bits (291), Expect = 5.3e-23
Identity = 61/96 (63.54%), Postives = 71/96 (73.96%), Query Frame = 0 

Query: 1  MKFLGWYVKIGTVSALIGASMEMFMIKTGFCIEE----ILLFN--ECPLTLDFSCSRPRN 60
          MKFL WY+KI  VSALIG SME+FMIKTGFC  E      LF   +C ++  F C+   +
Sbjct: 1  MKFLDWYLKIAAVSALIGGSMELFMIKTGFCFAENHAIASLFGRIQCCVSCLFMCTFSED 60

Query: 61 DKVTVLESEKIAWENSPEAQAIREALNPWRNHDAAE 91
          DKVTVLESEK AWENSPEAQA+R+ALNPWR+HD  E
Sbjct: 61 DKVTVLESEKRAWENSPEAQAMRDALNPWRDHDNQE 96

[Close]
BLAST of Carg05481 vs. ExPASy TrEMBL
Match: A0A6J1CA87 (uncharacterized protein LOC111009736 OS=Momordica charantia OX=3673 GN=LOC111009736 PE=3 SV=1)

HSP 1 Score: 115.9 bits (289), Expect = 9.1e-23
Identity = 63/95 (66.32%), Postives = 66/95 (69.47%), Query Frame = 0 

Query: 1   MKFLGWYVKIGTVSALIGASMEMFMIKTGFCIEEILLFNECPLTLDFSCSRPRNDKVTVL 60
           MKFL WYVKIG VSALIGASMEMFMIKTGF                        DKVTVL
Sbjct: 81  MKFLDWYVKIGAVSALIGASMEMFMIKTGF-----------------------YDKVTVL 140

Query: 61  ESEKIAWENSPEAQAIREALNPWRNHDAAEEARKD 96
           ESEK+AWENSPEAQA+REALNPWRN DA  EA+KD
Sbjct: 141 ESEKLAWENSPEAQAVREALNPWRNRDAVAEAKKD 152

[Close]
BLAST of Carg05481 vs. TAIR 10
Match: AT3G62450.1 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; Has 35 Blast hits to 35 proteins in 15 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 34; Viruses - 0; Other Eukaryotes - 1 (source: NCBI BLink). )

HSP 1 Score: 84.0 bits (206), Expect = 7.4e-17
Identity = 47/87 (54.02%), Postives = 53/87 (60.92%), Query Frame = 0 

Query: 2  KFLGWYVKIGTVSALIGASMEMFMIKTGFCIEEILLFNECPLTLDFSCSRPRNDKVTVLE 61
          +FL WY+KI   SA+IG  ME FMIKTGF                        DKVTV+E
Sbjct: 5  RFLDWYLKIAIGSAIIGGGMEFFMIKTGF-----------------------YDKVTVIE 64

Query: 62 SEKIAWENSPEAQAIREALNPWRNHDA 89
          +E+ A ENSPEAQAIREALNPWRN DA
Sbjct: 65 AERRALENSPEAQAIREALNPWRNKDA 68

The following BLAST results are available for this feature:
BLAST of Carg05481 vs. NCBI nr
Match NameE-valueIdentityDescription
KAG7013616.16.4e-47100.00hypothetical protein SDJN02_23783 [Cucurbita argyrosperma subsp. argyrosperma][more]
XP_023548311.12.5e-2775.00uncharacterized protein LOC111806987 [Cucurbita pepo subsp. pepo][more]
XP_022959449.12.5e-2775.00uncharacterized protein LOC111460420 [Cucurbita moschata] >XP_022959450.1 unchar... [more]
XP_023006006.12.5e-2775.00uncharacterized protein LOC111498883 [Cucurbita maxima][more]
XP_038906919.14.1e-2571.88uncharacterized protein LOC120092786 [Benincasa hispida][more]
BLAST of Carg05481 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of Carg05481 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A6J1H8371.2e-2775.00uncharacterized protein LOC111460420 OS=Cucurbita moschata OX=3662 GN=LOC1114604... [more]
A0A6J1KWK71.2e-2775.00uncharacterized protein LOC111498883 OS=Cucurbita maxima OX=3661 GN=LOC111498883... [more]
A0A5A7SQJ11.8e-2367.37Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold... [more]
A0A5A7QYM45.3e-2363.54UDP-N-acetylmuramoylalanine--D-glutamate ligase OS=Striga asiatica OX=4170 GN=ST... [more]
A0A6J1CA879.1e-2366.32uncharacterized protein LOC111009736 OS=Momordica charantia OX=3673 GN=LOC111009... [more]
BLAST of Carg05481 vs. TAIR 10
Match NameE-valueIdentityDescription
AT3G62450.17.4e-1754.02unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biologic... [more]
InterPro
Analysis Name: InterPro Annotations of Silver-seed gourd (SMH-JMG-627) v2
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePANTHERPTHR36377:SF1DNA MISMATCH REPAIR PROTEINcoord: 1..91
NoneNo IPR availablePANTHERPTHR36377DNA MISMATCH REPAIR PROTEINcoord: 1..91

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Carg05481-RACarg05481-RAmRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
cellular_component GO:0016020 membrane