Carg05469 (gene) Silver-seed gourd (SMH-JMG-627) v2

Overview


Name	Carg05469
Type	gene
Organism	Cucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
Description	Cytochrome c oxidase assembly factor 4-like protein
Location	Carg_Chr17: 1628331 .. 1629544 (-)
RNA-Seq Expression	Carg05469
Synteny	Carg05469

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

TTTTAATCATTCCCTTAACTTGAGCAGTTCGAACTGCCTGTAAAATTAGCGTCGTACCTGAACGTAGAAAAATGGGGAATCCGCCGATTTCGCCGGAGAATCAGCCGCCTCTTCACGGGAGCGACGCCGACGCCGACGACGAGAACGTCAAGCAGCTCAATGAATGCTCCTCTTTCTACTTATCGTTACAGGTTCTTCGTGGCCATTGCGATCGTCATCTTCTTCTTTTTTACGTTCTGCTAAAACCCTAAGCCCTGAACTGCTAATCGATGTTTATTGTCTTGATCACCATAATTTTCAGGAATGTCTTATCAAAACTAACAGGAACTGGAAAGATTGCCAGGCTGGTACGCCGCCATCTCTCATTTCTTCTGGTTCTAAGTTCTAGGATTGTTTAGCTTCATCTCTGAATCGTATTGATTTTATTTTATTTTTTCGTTTGAAGTATTTATCCCTTAGATCGAACTGGAATTCATTGTAGCAATCGGCCAACATCTCGCCTGATTCTTACAAATTTGAAATTCCAATGTCTATTTTGAGTAATCCTTTAAATTTTTATCTAAAATGACTGTTCTAATGTATGATCTCACCACTGATTTGTCTGGCAGAGGTTCAAGCTTTGAAGGCTTGCAATGAGAGAAGGAAAACTGGCCATGGCAAGTGAAGGTTCTGGAAAGGAGCATAGTGTACCAGATCACATCTAAGATATTGGCTTTACTCATTCACAATTTTGTTATATTGACTCGTTTAAACGTATTTTGAGATATCTAAAAGCTTGATTGTTCTGAAACCTTATCATTATGTCAAGCTATGCTTATCTTAGCCTATTTCTGCTCGTGACCTGAGAATTTGAATCATACAACAAAAGGGTATATATAAGCCGATCGTTACCTCAAAAAAGAGTATATATTAGTTGCTGTCGAGCTATGCTTATATTACCCATATTTCTGCTCGTGACTTAAGATCTTGAGAATCTGAATCATACAACAAAAGAGTATATATTAGCGGCTCGTTACCTCAAAAAAGAGCATATATTAGTTGCTGTTGAGCTATGCTTATGTTAGTCGTGACCTAAGATCTGAGAATTTGAATCTCAAAAGAGTATATATTAGCTTACCTCAAAAAGGAGTATGTATTCGTTGCTGTCGAGCTATGCTTATGTTAGCCCTATTTTTTCTTGTGACCTGAGATCTGAGAATTTGAATCATACAACA

mRNA sequence

TTTTAATCATTCCCTTAACTTGAGCAGTTCGAACTGCCTGTAAAATTAGCGTCGTACCTGAACGTAGAAAAATGGGGAATCCGCCGATTTCGCCGGAGAATCAGCCGCCTCTTCACGGGAGCGACGCCGACGCCGACGACGAGAACGTCAAGCAGCTCAATGAATGCTCCTCTTTCTACTTATCGTTACAGGAATGTCTTATCAAAACTAACAGGAACTGGAAAGATTGCCAGGCTGAGGTTCAAGCTTTGAAGGCTTGCAATGAGAGAAGGAAAACTGGCCATGGCAAGTGAAGGTTCTGGAAAGGAGCATAGTGTACCAGATCACATCTAAGATATTGGCTTTACTCATTCACAATTTTGTTATATTGACTCGTTTAAACGTATTTTGAGATATCTAAAAGCTTGATTGTTCTGAAACCTTATCATTATGTCAAGCTATGCTTATCTTAGCCTATTTCTGCTCGTGACCTGAGAATTTGAATCATACAACAAAAGGGTATATATAAGCCGATCGTTACCTCAAAAAAGAGTATATATTAGTTGCTGTCGAGCTATGCTTATATTACCCATATTTCTGCTCGTGACTTAAGATCTTGAGAATCTGAATCATACAACAAAAGAGTATATATTAGCGGCTCGTTACCTCAAAAAAGAGCATATATTAGTTGCTGTTGAGCTATGCTTATGTTAGTCGTGACCTAAGATCTGAGAATTTGAATCTCAAAAGAGTATATATTAGCTTACCTCAAAAAGGAGTATGTATTCGTTGCTGTCGAGCTATGCTTATGTTAGCCCTATTTTTTCTTGTGACCTGAGATCTGAGAATTTGAATCATACAACA

Coding sequence (CDS)

ATGGGGAATCCGCCGATTTCGCCGGAGAATCAGCCGCCTCTTCACGGGAGCGACGCCGACGCCGACGACGAGAACGTCAAGCAGCTCAATGAATGCTCCTCTTTCTACTTATCGTTACAGGAATGTCTTATCAAAACTAACAGGAACTGGAAAGATTGCCAGGCTGAGGTTCAAGCTTTGAAGGCTTGCAATGAGAGAAGGAAAACTGGCCATGGCAAGTGA

Protein sequence

MGNPPISPENQPPLHGSDADADDENVKQLNECSSFYLSLQECLIKTNRNWKDCQAEVQALKACNERRKTGHGK

Homology

[Close]

BLAST of Carg05469 vs. NCBI nr
Match: XP_022958916.1 (uncharacterized protein LOC111460064 [Cucurbita moschata] >XP_023006279.1 uncharacterized protein LOC111499062 [Cucurbita maxima] >XP_023548597.1 uncharacterized protein LOC111807214 [Cucurbita pepo subsp. pepo] >KAG7013604.1 hypothetical protein SDJN02_23771 [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 155.6 bits (392), Expect = 1.6e-34
Identity = 73/73 (100.00%), Postives = 73/73 (100.00%), Query Frame = 0


Query: 1  MGNPPISPENQPPLHGSDADADDENVKQLNECSSFYLSLQECLIKTNRNWKDCQAEVQAL 60
          MGNPPISPENQPPLHGSDADADDENVKQLNECSSFYLSLQECLIKTNRNWKDCQAEVQAL
Sbjct: 1  MGNPPISPENQPPLHGSDADADDENVKQLNECSSFYLSLQECLIKTNRNWKDCQAEVQAL 60

Query: 61 KACNERRKTGHGK 74
          KACNERRKTGHGK
Sbjct: 61 KACNERRKTGHGK 73

[Close]

BLAST of Carg05469 vs. NCBI nr
Match: KAG6575028.1 (hypothetical protein SDJN03_25667, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 152.5 bits (384), Expect = 1.4e-33
Identity = 72/73 (98.63%), Postives = 72/73 (98.63%), Query Frame = 0


Query: 1  MGNPPISPENQPPLHGSDADADDENVKQLNECSSFYLSLQECLIKTNRNWKDCQAEVQAL 60
          MGNPPISPENQ PLHGSDADADDENVKQLNECSSFYLSLQECLIKTNRNWKDCQAEVQAL
Sbjct: 1  MGNPPISPENQTPLHGSDADADDENVKQLNECSSFYLSLQECLIKTNRNWKDCQAEVQAL 60

Query: 61 KACNERRKTGHGK 74
          KACNERRKTGHGK
Sbjct: 61 KACNERRKTGHGK 73

[Close]

BLAST of Carg05469 vs. NCBI nr
Match: XP_004153368.1 (cytochrome c oxidase assembly factor 4 homolog, mitochondrial isoform X2 [Cucumis sativus])

HSP 1 Score: 132.1 bits (331), Expect = 1.9e-27
Identity = 62/73 (84.93%), Postives = 67/73 (91.78%), Query Frame = 0


Query: 1  MGNPPISPENQPPLHGSDADADDENVKQLNECSSFYLSLQECLIKTNRNWKDCQAEVQAL 60
          MG PPISPENQPPLH SDAD +DENVKQLNECSSFYLSLQ+CLIKTNRNWK CQAEVQAL
Sbjct: 1  MGKPPISPENQPPLHRSDADDEDENVKQLNECSSFYLSLQDCLIKTNRNWKSCQAEVQAL 60

Query: 61 KACNERRKTGHGK 74
          K+C+ERRK+G  K
Sbjct: 61 KSCSERRKSGQRK 73

[Close]

BLAST of Carg05469 vs. NCBI nr
Match: XP_008458528.1 (PREDICTED: cytochrome c oxidase assembly factor 4 homolog, mitochondrial [Cucumis melo] >XP_008458529.1 PREDICTED: cytochrome c oxidase assembly factor 4 homolog, mitochondrial [Cucumis melo] >XP_008458530.1 PREDICTED: cytochrome c oxidase assembly factor 4 homolog, mitochondrial [Cucumis melo] >XP_016902266.1 PREDICTED: cytochrome c oxidase assembly factor 4 homolog, mitochondrial [Cucumis melo] >KAA0033444.1 cytochrome c oxidase assembly factor 4-like protein [Cucumis melo var. makuwa])

HSP 1 Score: 130.6 bits (327), Expect = 5.6e-27
Identity = 61/73 (83.56%), Postives = 67/73 (91.78%), Query Frame = 0


Query: 1  MGNPPISPENQPPLHGSDADADDENVKQLNECSSFYLSLQECLIKTNRNWKDCQAEVQAL 60
          MG PPISPEN+PPLH SDAD +DENVKQLNECSSFYLSLQ+CLIKTNRNWK CQAEVQAL
Sbjct: 1  MGKPPISPENRPPLHRSDADDEDENVKQLNECSSFYLSLQDCLIKTNRNWKSCQAEVQAL 60

Query: 61 KACNERRKTGHGK 74
          K+C+ERRK+G  K
Sbjct: 61 KSCSERRKSGQRK 73

[Close]

BLAST of Carg05469 vs. NCBI nr
Match: XP_038874602.1 (uncharacterized protein LOC120067191 [Benincasa hispida] >XP_038874603.1 uncharacterized protein LOC120067191 [Benincasa hispida])

HSP 1 Score: 127.9 bits (320), Expect = 3.6e-26
Identity = 61/73 (83.56%), Postives = 65/73 (89.04%), Query Frame = 0


Query: 1  MGNPPISPENQPPLHGSDADADDENVKQLNECSSFYLSLQECLIKTNRNWKDCQAEVQAL 60
          MG PP SPENQPPLH SDA+ DDENVKQLNECSSFYLSLQ+CLIKTNRNWK CQAEVQAL
Sbjct: 1  MGKPPNSPENQPPLHRSDAEDDDENVKQLNECSSFYLSLQDCLIKTNRNWKACQAEVQAL 60

Query: 61 KACNERRKTGHGK 74
          K+C+ERRK G  K
Sbjct: 61 KSCSERRKPGQRK 73

[Close]

BLAST of Carg05469 vs. ExPASy TrEMBL
Match: A0A6J1L1R2 (uncharacterized protein LOC111499062 OS=Cucurbita maxima OX=3661 GN=LOC111499062 PE=4 SV=1)

HSP 1 Score: 155.6 bits (392), Expect = 7.9e-35
Identity = 73/73 (100.00%), Postives = 73/73 (100.00%), Query Frame = 0


Query: 1  MGNPPISPENQPPLHGSDADADDENVKQLNECSSFYLSLQECLIKTNRNWKDCQAEVQAL 60
          MGNPPISPENQPPLHGSDADADDENVKQLNECSSFYLSLQECLIKTNRNWKDCQAEVQAL
Sbjct: 1  MGNPPISPENQPPLHGSDADADDENVKQLNECSSFYLSLQECLIKTNRNWKDCQAEVQAL 60

Query: 61 KACNERRKTGHGK 74
          KACNERRKTGHGK
Sbjct: 61 KACNERRKTGHGK 73

[Close]

BLAST of Carg05469 vs. ExPASy TrEMBL
Match: A0A6J1H3G8 (uncharacterized protein LOC111460064 OS=Cucurbita moschata OX=3662 GN=LOC111460064 PE=4 SV=1)

HSP 1 Score: 155.6 bits (392), Expect = 7.9e-35
Identity = 73/73 (100.00%), Postives = 73/73 (100.00%), Query Frame = 0


Query: 1  MGNPPISPENQPPLHGSDADADDENVKQLNECSSFYLSLQECLIKTNRNWKDCQAEVQAL 60
          MGNPPISPENQPPLHGSDADADDENVKQLNECSSFYLSLQECLIKTNRNWKDCQAEVQAL
Sbjct: 1  MGNPPISPENQPPLHGSDADADDENVKQLNECSSFYLSLQECLIKTNRNWKDCQAEVQAL 60

Query: 61 KACNERRKTGHGK 74
          KACNERRKTGHGK
Sbjct: 61 KACNERRKTGHGK 73

[Close]

BLAST of Carg05469 vs. ExPASy TrEMBL
Match: A0A0A0KEH3 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G062310 PE=4 SV=1)

HSP 1 Score: 132.1 bits (331), Expect = 9.4e-28
Identity = 62/73 (84.93%), Postives = 67/73 (91.78%), Query Frame = 0


Query: 1  MGNPPISPENQPPLHGSDADADDENVKQLNECSSFYLSLQECLIKTNRNWKDCQAEVQAL 60
          MG PPISPENQPPLH SDAD +DENVKQLNECSSFYLSLQ+CLIKTNRNWK CQAEVQAL
Sbjct: 1  MGKPPISPENQPPLHRSDADDEDENVKQLNECSSFYLSLQDCLIKTNRNWKSCQAEVQAL 60

Query: 61 KACNERRKTGHGK 74
          K+C+ERRK+G  K
Sbjct: 61 KSCSERRKSGQRK 73

[Close]

BLAST of Carg05469 vs. ExPASy TrEMBL
Match: A0A1S3C8M5 (cytochrome c oxidase assembly factor 4 homolog, mitochondrial OS=Cucumis melo OX=3656 GN=LOC103497907 PE=4 SV=1)

HSP 1 Score: 130.6 bits (327), Expect = 2.7e-27
Identity = 61/73 (83.56%), Postives = 67/73 (91.78%), Query Frame = 0


Query: 1  MGNPPISPENQPPLHGSDADADDENVKQLNECSSFYLSLQECLIKTNRNWKDCQAEVQAL 60
          MG PPISPEN+PPLH SDAD +DENVKQLNECSSFYLSLQ+CLIKTNRNWK CQAEVQAL
Sbjct: 1  MGKPPISPENRPPLHRSDADDEDENVKQLNECSSFYLSLQDCLIKTNRNWKSCQAEVQAL 60

Query: 61 KACNERRKTGHGK 74
          K+C+ERRK+G  K
Sbjct: 61 KSCSERRKSGQRK 73

[Close]

BLAST of Carg05469 vs. ExPASy TrEMBL
Match: A0A5A7SQI1 (Cytochrome c oxidase assembly factor 4-like protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold111G001040 PE=4 SV=1)

HSP 1 Score: 130.6 bits (327), Expect = 2.7e-27
Identity = 61/73 (83.56%), Postives = 67/73 (91.78%), Query Frame = 0


Query: 1  MGNPPISPENQPPLHGSDADADDENVKQLNECSSFYLSLQECLIKTNRNWKDCQAEVQAL 60
          MG PPISPEN+PPLH SDAD +DENVKQLNECSSFYLSLQ+CLIKTNRNWK CQAEVQAL
Sbjct: 1  MGKPPISPENRPPLHRSDADDEDENVKQLNECSSFYLSLQDCLIKTNRNWKSCQAEVQAL 60

Query: 61 KACNERRKTGHGK 74
          K+C+ERRK+G  K
Sbjct: 61 KSCSERRKSGQRK 73

[Close]

BLAST of Carg05469 vs. TAIR 10
Match: AT5G18920.1 (Cox19-like CHCH family protein )

HSP 1 Score: 88.2 bits (217), Expect = 3.0e-18
Identity = 40/56 (71.43%), Postives = 45/56 (80.36%), Query Frame = 0


Query: 12 PPLHGSDADADDENVKQLNECSSFYLSLQECLIKTNRNWKDCQAEVQALKACNERR 68
          PP H  DAD DDENVKQL ECSS YLSLQ+CL+ +NR+WK CQ  VQALK C+ERR
Sbjct: 19 PPNHQMDADDDDENVKQLKECSSLYLSLQDCLVDSNRDWKSCQKHVQALKECHERR 74

The following BLAST results are available for this feature:

BLAST of Carg05469 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022958916.1	1.6e-34	100.00	uncharacterized protein LOC111460064 [Cucurbita moschata] >XP_023006279.1 unchar...	[more]
KAG6575028.1	1.4e-33	98.63	hypothetical protein SDJN03_25667, partial [Cucurbita argyrosperma subsp. sorori...	[more]
XP_004153368.1	1.9e-27	84.93	cytochrome c oxidase assembly factor 4 homolog, mitochondrial isoform X2 [Cucumi...	[more]
XP_008458528.1	5.6e-27	83.56	PREDICTED: cytochrome c oxidase assembly factor 4 homolog, mitochondrial [Cucumi...	[more]
XP_038874602.1	3.6e-26	83.56	uncharacterized protein LOC120067191 [Benincasa hispida] >XP_038874603.1 unchara...	[more]

BLAST of Carg05469 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of Carg05469 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1L1R2	7.9e-35	100.00	uncharacterized protein LOC111499062 OS=Cucurbita maxima OX=3661 GN=LOC111499062...	[more]
A0A6J1H3G8	7.9e-35	100.00	uncharacterized protein LOC111460064 OS=Cucurbita moschata OX=3662 GN=LOC1114600...	[more]
A0A0A0KEH3	9.4e-28	84.93	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G062310 PE=4 SV=1	[more]
A0A1S3C8M5	2.7e-27	83.56	cytochrome c oxidase assembly factor 4 homolog, mitochondrial OS=Cucumis melo OX...	[more]
A0A5A7SQI1	2.7e-27	83.56	Cytochrome c oxidase assembly factor 4-like protein OS=Cucumis melo var. makuwa ...	[more]

BLAST of Carg05469 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G18920.1	3.0e-18	71.43	Cox19-like CHCH family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Silver-seed gourd (SMH-JMG-627) v2
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..25
None	No IPR available	PANTHER	PTHR48236	COX19-LIKE CHCH FAMILY PROTEIN	coord: 3..70
IPR009069	Cysteine alpha-hairpin motif superfamily	SUPERFAMILY	47072	Cysteine alpha-hairpin motif	coord: 27..66

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Carg05469-RA	Carg05469-RA	mRNA