Carg05413 (gene) Silver-seed gourd (SMH-JMG-627) v2

Overview


Name	Carg05413
Type	gene
Organism	Cucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
Description	Unknown protein
Location	Carg_Chr17: 1270790 .. 1271201 (+)
RNA-Seq Expression	Carg05413
Synteny	Carg05413

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGATTGGCTGGACTCTACATTTCAGGGTGCGGCGACGAAGCAGGATGCGGAAGGGGGCAGAGCTGAGGAACAATGCGAGGCAGGTGGCCCATCGTGGTGGGGTGGCGGAGTCCATGACAGAAGCCGCCAAGCCCAATGAGAACGTTAGTAATGCACCACAGTGAGCGTGAGAGTGGTGATGGGGGTGCGTTGTTTCGTTGTATTATACCATTTTGAGTTGGTCTGTTGTTTGTGATTTTGCAGTGTTCCAAGTTTGCAGTAAAGATGGCAACAAACGAGTTTCAATGAAGATCCCATGTTAGCCCAATAAATGAACAGGTGAATAAGACGTATGGAATTGACCAAGCTTCACATGCAAGCACATAGAATATAACAATGGGCGGTCCAGTTTTGAAAACTTGGAAAAGTGGC

mRNA sequence

ATGATTGGCTGGACTCTACATTTCAGGGTGCGGCGACGAAGCAGGATGCGGAAGGGGGCAGAGCTGAGGAACAATGCGAGGCAGGTGGCCCATCGTGGTGGGGTGGCGGAGTCCATGACAGAAGCCGCCAAGCCCAATGAGAACTGTTCCAAGTTTGCAGTAAAGATGGCAACAAACGAGTTTCAATGAAGATCCCATGTTAGCCCAATAAATGAACAGGTGAATAAGACGTATGGAATTGACCAAGCTTCACATGCAAGCACATAGAATATAACAATGGGCGGTCCAGTTTTGAAAACTTGGAAAAGTGGC

Coding sequence (CDS)

ATGATTGGCTGGACTCTACATTTCAGGGTGCGGCGACGAAGCAGGATGCGGAAGGGGGCAGAGCTGAGGAACAATGCGAGGCAGGTGGCCCATCGTGGTGGGGTGGCGGAGTCCATGACAGAAGCCGCCAAGCCCAATGAGAACTGTTCCAAGTTTGCAGTAAAGATGGCAACAAACGAGTTTCAATGA

Protein sequence

MIGWTLHFRVRRRSRMRKGAELRNNARQVAHRGGVAESMTEAAKPNENCSKFAVKMATNEFQ

Homology

[Close]

BLAST of Carg05413 vs. NCBI nr
Match: KAG7013550.1 (hypothetical protein SDJN02_23717, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 124.0 bits (310), Expect = 4.5e-25
Identity = 62/62 (100.00%), Postives = 62/62 (100.00%), Query Frame = 0


Query: 1  MIGWTLHFRVRRRSRMRKGAELRNNARQVAHRGGVAESMTEAAKPNENCSKFAVKMATNE 60
          MIGWTLHFRVRRRSRMRKGAELRNNARQVAHRGGVAESMTEAAKPNENCSKFAVKMATNE
Sbjct: 1  MIGWTLHFRVRRRSRMRKGAELRNNARQVAHRGGVAESMTEAAKPNENCSKFAVKMATNE 60

Query: 61 FQ 63
          FQ
Sbjct: 61 FQ 62

[Close]

BLAST of Carg05413 vs. NCBI nr
Match: KAG6574978.1 (Late embryogenesis abundant protein 31, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 102.8 bits (255), Expect = 1.1e-18
Identity = 53/54 (98.15%), Postives = 54/54 (100.00%), Query Frame = 0


Query: 9   RVRRRSRMRKGAELRNNARQVAHRGGVAESMTEAAKPNENCSKFAVKMATNEFQ 63
           +VRRRSRMRKGAELRNNARQVAHRGGVAESMTEAAKPNENCSKFAVKMATNEFQ
Sbjct: 142 QVRRRSRMRKGAELRNNARQVAHRGGVAESMTEAAKPNENCSKFAVKMATNEFQ 195

The following BLAST results are available for this feature:

BLAST of Carg05413 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG7013550.1	4.5e-25	100.00	hypothetical protein SDJN02_23717, partial [Cucurbita argyrosperma subsp. argyro...	[more]
KAG6574978.1	1.1e-18	98.15	Late embryogenesis abundant protein 31, partial [Cucurbita argyrosperma subsp. s...	[more]

BLAST of Carg05413 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of Carg05413 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of Carg05413 vs. NCBI nr


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Silver-seed gourd (SMH-JMG-627) v2
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR007011	Late embryogenesis abundant protein, SMP subgroup domain	PFAM	PF04927	SMP	coord: 19..48 e-value: 9.6E-6 score: 26.0
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 22..42

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Carg05413-RA	Carg05413-RA	mRNA