Carg05412 (gene) Silver-seed gourd (SMH-JMG-627) v2

Overview
NameCarg05412
Typegene
OrganismCucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
Descriptionlate embryogenesis abundant protein D-34-like
LocationCarg_Chr17: 1269766 .. 1270358 (+)
RNA-Seq ExpressionCarg05412
SyntenyCarg05412
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGTCAAGAACAGCCGCGCCGCACGAACAGCTAGAACCTATGGTGTTGTTCAACGTCTCTGGAGACGTTGTCTCCAAGGTTATACCACCCGTGGACGCTGACATGATGCAACTGCCGAGACCATGGTGTTTAGTCAAACCCAGTAGGGCGGCCCTGCCGTTTTGGCTTCGTTGGCCTCGAGGATTTAACTGATGCTACCAGAGATAAGGAGTTGCTGTTAAAGACACCGATATCCCAGGAAATCGCATCATTACTGATACAGTTGGCCAGACAGGTCCTCTTTTTAAGAGTTTTTAACTACATTTTAGTTCTGTTTTATCTTTTGATTAAGCTCGAATCTCAAACTCACTCCTTGATTTTGGTTTGTTTCTTTCCCAGTGCAGATCGTTGGGCAGTTTGTGGAGCCTGCGCCCATTATTTTAGTTGTCATAGCAATGCAGAGCGCGGTCACCATAGGACAAGCCCTTGAAGCGACCGTTCATGCTGCAGGTGATAAACCGCAGAGCGATGCTGCTGCCTTTCAAGCAGTAGAGGTGAGGGTAAAAGGGAGCAATGCCGTGATACCAGGTGGACTCGCAGCCTGTGCTCAGTAG

mRNA sequence

ATGTCAAGAACAGCCGCGCCGCACGAACAGCTAGAACCTATGGTGTTGTTCAACGTCTCTGGAGACGTTGTCTCCAAGGTTATACCACCCGTGGACGCTGACATGATGCAACTGCCGAGACCATGGTGTTTAGTCAAACCCAGGCGGCCCTGCCGTTTTGGCTTCGTTGGCCTCGAGGATTTAACTGATGCTACCAGAGATAAGGAGTTGCTGTTAAAGACACCGATATCCCAGGAAATCGCATCATTACTGATACAGTTGGCCAGACAGATCGTTGGGCAGTTTGTGGAGCCTGCGCCCATTATTTTAGTTGTCATAGCAATGCAGAGCGCGGTCACCATAGGACAAGCCCTTGAAGCGACCGTTCATGCTGCAGGTGATAAACCGCAGAGCGATGCTGCTGCCTTTCAAGCAGTAGAGGTGAGGGTAAAAGGGAGCAATGCCGTGATACCAGGTGGACTCGCAGCCTGTGCTCAGTAG

Coding sequence (CDS)

ATGTCAAGAACAGCCGCGCCGCACGAACAGCTAGAACCTATGGTGTTGTTCAACGTCTCTGGAGACGTTGTCTCCAAGGTTATACCACCCGTGGACGCTGACATGATGCAACTGCCGAGACCATGGTGTTTAGTCAAACCCAGGCGGCCCTGCCGTTTTGGCTTCGTTGGCCTCGAGGATTTAACTGATGCTACCAGAGATAAGGAGTTGCTGTTAAAGACACCGATATCCCAGGAAATCGCATCATTACTGATACAGTTGGCCAGACAGATCGTTGGGCAGTTTGTGGAGCCTGCGCCCATTATTTTAGTTGTCATAGCAATGCAGAGCGCGGTCACCATAGGACAAGCCCTTGAAGCGACCGTTCATGCTGCAGGTGATAAACCGCAGAGCGATGCTGCTGCCTTTCAAGCAGTAGAGGTGAGGGTAAAAGGGAGCAATGCCGTGATACCAGGTGGACTCGCAGCCTGTGCTCAGTAG

Protein sequence

MSRTAAPHEQLEPMVLFNVSGDVVSKVIPPVDADMMQLPRPWCLVKPRRPCRFGFVGLEDLTDATRDKELLLKTPISQEIASLLIQLARQIVGQFVEPAPIILVVIAMQSAVTIGQALEATVHAAGDKPQSDAAAFQAVEVRVKGSNAVIPGGLAACAQ
Homology
BLAST of Carg05412 vs. NCBI nr
Match: KAG6574978.1 (Late embryogenesis abundant protein 31, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 245.7 bits (626), Expect = 2.6e-61
Identity = 138/159 (86.79%), Postives = 138/159 (86.79%), Query Frame = 0

Query: 1   MSRTAAPHEQLEPMVLFNVSGDVVSKVIPPVDADMMQLPRPWCLVKPRRPCRFGFVGLED 60
           MSRTAAPHEQLEPMVLFNVSGDVVSK  P                   RPCRFGFVGLED
Sbjct: 1   MSRTAAPHEQLEPMVLFNVSGDVVSKSNP-----------------VGRPCRFGFVGLED 60

Query: 61  LTDATRDKELLLKTPISQEIASLLIQLARQIVGQFVEPAPIILVVIAMQSAVTIGQALEA 120
           LTDATRDKELLLKTPISQEIASLLIQLARQIVGQFVEPAPIILVVIAMQSAVTIGQALEA
Sbjct: 61  LTDATRDKELLLKTPISQEIASLLIQLARQIVGQFVEPAPIILVVIAMQSAVTIGQALEA 120

Query: 121 TVHAAGDKPQSDAAAFQAVEVRVKGSNAVIPGGLAACAQ 160
           TVHAAGDKPQSDAAAFQAVEVRVKGSNAVIPGGLAACAQ
Sbjct: 121 TVHAAGDKPQSDAAAFQAVEVRVKGSNAVIPGGLAACAQ 142

BLAST of Carg05412 vs. NCBI nr
Match: XP_023514760.1 (late embryogenesis abundant protein D-34-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 141.0 bits (354), Expect = 9.1e-30
Identity = 88/170 (51.76%), Postives = 105/170 (61.76%), Query Frame = 0

Query: 8   HEQLEPMV---LFNVSGDVVSKVIPPVDADMMQL-------------PRPWCLVKPRRPC 67
           H+Q +P+    +FNVSGD+ SK IPPVDADMMQ              P         R  
Sbjct: 9   HQQKQPIKYGDIFNVSGDLASKAIPPVDADMMQTAETMVFGETQKGGPAAMMQSAASRNE 68

Query: 68  RFGFVGLEDLTDATRDKELLLKTPISQEIASLLIQLARQIVGQFVEPAPIILVVIAMQSA 127
           R GFVG +D+TDA RD+ + +K      I  +  ++A Q+VGQFVEP P I   I  Q+A
Sbjct: 69  RSGFVGHDDVTDAARDQGVAVKETDVPGIRVITEKVAGQVVGQFVEPTPFIGAAIVEQNA 128

Query: 128 VTIGQALEATVHAAGDKP--QSDAAAFQAVEVRVKGSNAVIPGGLAACAQ 160
           +TIGQALEAT H AGDKP  +SDAAA QA EVR  GSN VIPGGLAA AQ
Sbjct: 129 ITIGQALEATAHTAGDKPVDESDAAAIQAAEVRATGSNVVIPGGLAASAQ 178

BLAST of Carg05412 vs. NCBI nr
Match: XP_022930294.1 (late embryogenesis abundant protein D-34-like [Cucurbita moschata])

HSP 1 Score: 141.0 bits (354), Expect = 9.1e-30
Identity = 88/170 (51.76%), Postives = 105/170 (61.76%), Query Frame = 0

Query: 8   HEQLEPMV---LFNVSGDVVSKVIPPVDADMMQL-------------PRPWCLVKPRRPC 67
           H+Q +P+    +FNVSGD+ SK IPPVDADMMQ              P         R  
Sbjct: 9   HQQQQPIKYGDIFNVSGDLASKAIPPVDADMMQTAETMVFGETQKGGPAAMMQSAASRNE 68

Query: 68  RFGFVGLEDLTDATRDKELLLKTPISQEIASLLIQLARQIVGQFVEPAPIILVVIAMQSA 127
           R GFVG +D+TDA RD+ + +K      I  +  ++A Q+VGQFVEP P I   I  Q+A
Sbjct: 69  RSGFVGHDDVTDAARDQGVAVKETDVPGIRVITEKVAGQVVGQFVEPTPFIGAAIVEQNA 128

Query: 128 VTIGQALEATVHAAGDKP--QSDAAAFQAVEVRVKGSNAVIPGGLAACAQ 160
           +TIGQALEAT H AGDKP  +SDAAA QA EVR  GSN VIPGGLAA AQ
Sbjct: 129 ITIGQALEATAHTAGDKPVDESDAAAIQAAEVRATGSNVVIPGGLAASAQ 178

BLAST of Carg05412 vs. NCBI nr
Match: XP_022999952.1 (late embryogenesis abundant protein D-34-like [Cucurbita maxima])

HSP 1 Score: 139.8 bits (351), Expect = 2.0e-29
Identity = 88/170 (51.76%), Postives = 104/170 (61.18%), Query Frame = 0

Query: 8   HEQLEPMV---LFNVSGDVVSKVIPPVDADMMQL-------------PRPWCLVKPRRPC 67
           H+Q  P+    +FNVSGD+ SK IPPVDADMMQ              P         R  
Sbjct: 9   HQQQRPIKYGDVFNVSGDLASKAIPPVDADMMQTAETMVFGETQKGGPAAMMQSAASRNE 68

Query: 68  RFGFVGLEDLTDATRDKELLLKTPISQEIASLLIQLARQIVGQFVEPAPIILVVIAMQSA 127
           R GFVG +D+TDA RD+ + +K      I  +  ++A Q+VGQFVEP P I   I  Q+A
Sbjct: 69  RSGFVGHDDVTDAARDQGVAVKETDVPGIRVITEKVAGQVVGQFVEPTPFIGAAIVEQNA 128

Query: 128 VTIGQALEATVHAAGDKP--QSDAAAFQAVEVRVKGSNAVIPGGLAACAQ 160
           +TIGQALEAT H AGDKP  +SDAAA QA EVR  GSN VIPGGLAA AQ
Sbjct: 129 ITIGQALEATAHTAGDKPVDESDAAAIQAAEVRATGSNVVIPGGLAASAQ 178

BLAST of Carg05412 vs. NCBI nr
Match: KAG6593887.1 (hypothetical protein SDJN03_13363, partial [Cucurbita argyrosperma subsp. sororia] >KAG7026234.1 hypothetical protein SDJN02_12733, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 139.0 bits (349), Expect = 3.4e-29
Identity = 87/170 (51.18%), Postives = 104/170 (61.18%), Query Frame = 0

Query: 8   HEQLEPMV---LFNVSGDVVSKVIPPVDADMMQL-------------PRPWCLVKPRRPC 67
           H+Q +P+    +FNVSGD+ SK IPPVDADMMQ              P         R  
Sbjct: 9   HQQQQPIKYGDIFNVSGDLASKAIPPVDADMMQTAETMVFGETQKGGPAAMMQSAASRNE 68

Query: 68  RFGFVGLEDLTDATRDKELLLKTPISQEIASLLIQLARQIVGQFVEPAPIILVVIAMQSA 127
           R GFVG  D+TDA RD+ + +K      I  +  ++A Q++GQFVEP P I   I  Q+A
Sbjct: 69  RSGFVGHGDVTDAARDQGVAVKETDVPGIRVITEKVAGQVIGQFVEPTPFIGAAIVEQNA 128

Query: 128 VTIGQALEATVHAAGDKP--QSDAAAFQAVEVRVKGSNAVIPGGLAACAQ 160
           +TIGQALEAT H AGDKP  +SDAAA QA EVR  GSN VIPGGLAA AQ
Sbjct: 129 ITIGQALEATAHTAGDKPVDESDAAAIQAAEVRATGSNVVIPGGLAASAQ 178

BLAST of Carg05412 vs. ExPASy Swiss-Prot
Match: P09444 (Late embryogenesis abundant protein D-34 OS=Gossypium hirsutum OX=3635 PE=3 SV=1)

HSP 1 Score: 99.8 bits (247), Expect = 3.0e-20
Identity = 72/175 (41.14%), Postives = 97/175 (55.43%), Query Frame = 0

Query: 5   AAPHEQLEPMV---LFNVSGDVVSKVIPPVDADMMQLPRPWCLVKPR------------- 64
           A   E  EP+    +FNVSG++ +K I P DA MMQ      L + +             
Sbjct: 13  AGQGENQEPIKYGDVFNVSGELANKPIAPQDAAMMQTAETQVLGQTQKGGTAAVMQAAAT 72

Query: 65  RPCRFGFVGLEDLTDATRDKELLLKTPISQEIASLLIQLARQIVGQFVEPAPIIL--VVI 124
           R  + G VG  D+TD   ++ + L          +   +A Q+VGQ+V+  P++   V +
Sbjct: 73  RNEQVGVVGHNDITDIAGEQGVTLAETDVAGRRIITEAVAGQVVGQYVQATPVMTSQVGV 132

Query: 125 AMQSAVTIGQALEATVHAAGDKP--QSDAAAFQAVEVRVKGSNAVIPGGLAACAQ 160
            +Q+A+TIG+ALEAT   AGDKP  QSDAAA QA EVR  GSN +IPGGLAA AQ
Sbjct: 133 VLQNAITIGEALEATAKTAGDKPVDQSDAAAVQAAEVRATGSNVIIPGGLAATAQ 187

BLAST of Carg05412 vs. ExPASy Swiss-Prot
Match: Q9LJ97 (Late embryogenesis abundant protein 31 OS=Arabidopsis thaliana OX=3702 GN=RAB28 PE=1 SV=1)

HSP 1 Score: 92.0 bits (227), Expect = 6.3e-18
Identity = 69/185 (37.30%), Postives = 95/185 (51.35%), Query Frame = 0

Query: 1   MSRTAAPHEQLEPMV---LFNVSGDVVSKVIPPVDADMMQLPRPWCLVKPRR-------- 60
           MS+   P    EP+    +F VSG++  K I P DA+MMQ          ++        
Sbjct: 1   MSQEEQPKRPQEPVTYGDVFEVSGELADKPIAPEDANMMQAAETRVFGHTQKGGAAAVMQ 60

Query: 61  -----PCRFGFVGLEDLTDATRDKELLLKTPISQEIASLLIQLARQIVGQFVEPAPII-- 120
                  R GFV   D TD   ++ + +              +  Q+VGQ+VEP P+   
Sbjct: 61  SAATANKRGGFVHPGDTTDLAAERGVTVAQTDVPGARVTTEFVGGQVVGQYVEPRPVATA 120

Query: 121 ------LVVIAMQSAVTIGQALEATVHAAGDKP--QSDAAAFQAVEVRVKGSNAVIPGGL 160
                 +V +++QSA+TIG+ALEATV  AG+KP  QSDAAA QA EVR  G+N + PGG+
Sbjct: 121 AAMEAEVVGLSLQSAITIGEALEATVQTAGNKPVDQSDAAAIQAAEVRACGTNVIAPGGI 180

BLAST of Carg05412 vs. ExPASy Swiss-Prot
Match: Q9LJ95 (Late embryogenesis abundant protein 32 OS=Arabidopsis thaliana OX=3702 GN=ECP31 PE=2 SV=1)

HSP 1 Score: 78.6 bits (192), Expect = 7.2e-14
Identity = 61/172 (35.47%), Postives = 86/172 (50.00%), Query Frame = 0

Query: 7   PHEQLEPMVLFNVSGDVVSKVIPPVDADMMQL-------------PRPWCLVKPRRPCRF 66
           P E ++   +F VSG++  K I P DA MMQ              P            R 
Sbjct: 9   PREPVKYGDVFEVSGELADKPIAPEDAKMMQSAETHVFGHTQKGGPAAVMQSAATTNIRG 68

Query: 67  GFVGLEDLTDATRDKELLLKTPISQEIASLLIQLARQIVGQFVEPAPIILVV----IAMQ 126
           GFV  +D T+   ++   ++  +     +    +  Q+VGQ VEP  ++        A+Q
Sbjct: 69  GFVHPDDKTELVAERGATVEQTVPAATVTTEF-VGGQVVGQHVEPRRVVAAARTDEEALQ 128

Query: 127 SAVTIGQALEATVHAAGDKP--QSDAAAFQAVEVRVKGSNAVIPGGLAACAQ 160
           S +TIG+ALEATV  AG+KP  QSDAAA QA E+R  G+N +   G+AA AQ
Sbjct: 129 STITIGEALEATVKTAGNKPVDQSDAAAIQAAEMRASGTNVIALAGVAASAQ 179

BLAST of Carg05412 vs. ExPASy Swiss-Prot
Match: Q8GWT7 (Late embryogenesis abundant protein 47 OS=Arabidopsis thaliana OX=3702 GN=At5g27980 PE=2 SV=1)

HSP 1 Score: 50.8 bits (120), Expect = 1.6e-05
Identity = 31/66 (46.97%), Postives = 41/66 (62.12%), Query Frame = 0

Query: 96  VEPAPIILVVIAMQSAVTIGQALEATVHAAGDKP--QSDAAAFQAVEVRVKGSNAVIPGG 155
           V    ++   +  +  +TIG+ALEA V  AG+KP   SDAAA QA EVR  G   ++PGG
Sbjct: 52  VNQKKVVANPLKSEGTITIGEALEAAVLTAGNKPVEWSDAAAIQAAEVRATGRTNIMPGG 111

Query: 156 LAACAQ 160
           +AA AQ
Sbjct: 112 VAASAQ 117

BLAST of Carg05412 vs. ExPASy Swiss-Prot
Match: Q9SA57 (Late embryogenesis abundant protein 3 OS=Arabidopsis thaliana OX=3702 GN=At1g03120 PE=3 SV=1)

HSP 1 Score: 49.7 bits (117), Expect = 3.6e-05
Identity = 34/75 (45.33%), Postives = 46/75 (61.33%), Query Frame = 0

Query: 87  LARQIVGQFVEPAPIILVVIAMQSAVTIGQALEATVHAAGDKP--QSDAAAFQAVEVRVK 146
           +AR+    F +P P +  + ++ + VTIG+ALEAT  + GDKP  + DAAA QA E R  
Sbjct: 34  VARKQGDSFSQPDPTVATMGSVDT-VTIGEALEATALSLGDKPVDRRDAAAIQAAETRAT 93

Query: 147 GSNAVIPGGLAACAQ 160
           G +   PGGLA  AQ
Sbjct: 94  GESKGRPGGLAVAAQ 107

BLAST of Carg05412 vs. ExPASy TrEMBL
Match: A0A6J1ER33 (late embryogenesis abundant protein D-34-like OS=Cucurbita moschata OX=3662 GN=LOC111436790 PE=3 SV=1)

HSP 1 Score: 141.0 bits (354), Expect = 4.4e-30
Identity = 88/170 (51.76%), Postives = 105/170 (61.76%), Query Frame = 0

Query: 8   HEQLEPMV---LFNVSGDVVSKVIPPVDADMMQL-------------PRPWCLVKPRRPC 67
           H+Q +P+    +FNVSGD+ SK IPPVDADMMQ              P         R  
Sbjct: 9   HQQQQPIKYGDIFNVSGDLASKAIPPVDADMMQTAETMVFGETQKGGPAAMMQSAASRNE 68

Query: 68  RFGFVGLEDLTDATRDKELLLKTPISQEIASLLIQLARQIVGQFVEPAPIILVVIAMQSA 127
           R GFVG +D+TDA RD+ + +K      I  +  ++A Q+VGQFVEP P I   I  Q+A
Sbjct: 69  RSGFVGHDDVTDAARDQGVAVKETDVPGIRVITEKVAGQVVGQFVEPTPFIGAAIVEQNA 128

Query: 128 VTIGQALEATVHAAGDKP--QSDAAAFQAVEVRVKGSNAVIPGGLAACAQ 160
           +TIGQALEAT H AGDKP  +SDAAA QA EVR  GSN VIPGGLAA AQ
Sbjct: 129 ITIGQALEATAHTAGDKPVDESDAAAIQAAEVRATGSNVVIPGGLAASAQ 178

BLAST of Carg05412 vs. ExPASy TrEMBL
Match: A0A6J1KC62 (late embryogenesis abundant protein D-34-like OS=Cucurbita maxima OX=3661 GN=LOC111494279 PE=3 SV=1)

HSP 1 Score: 139.8 bits (351), Expect = 9.8e-30
Identity = 88/170 (51.76%), Postives = 104/170 (61.18%), Query Frame = 0

Query: 8   HEQLEPMV---LFNVSGDVVSKVIPPVDADMMQL-------------PRPWCLVKPRRPC 67
           H+Q  P+    +FNVSGD+ SK IPPVDADMMQ              P         R  
Sbjct: 9   HQQQRPIKYGDVFNVSGDLASKAIPPVDADMMQTAETMVFGETQKGGPAAMMQSAASRNE 68

Query: 68  RFGFVGLEDLTDATRDKELLLKTPISQEIASLLIQLARQIVGQFVEPAPIILVVIAMQSA 127
           R GFVG +D+TDA RD+ + +K      I  +  ++A Q+VGQFVEP P I   I  Q+A
Sbjct: 69  RSGFVGHDDVTDAARDQGVAVKETDVPGIRVITEKVAGQVVGQFVEPTPFIGAAIVEQNA 128

Query: 128 VTIGQALEATVHAAGDKP--QSDAAAFQAVEVRVKGSNAVIPGGLAACAQ 160
           +TIGQALEAT H AGDKP  +SDAAA QA EVR  GSN VIPGGLAA AQ
Sbjct: 129 ITIGQALEATAHTAGDKPVDESDAAAIQAAEVRATGSNVVIPGGLAASAQ 178

BLAST of Carg05412 vs. ExPASy TrEMBL
Match: A0A6J1C9L5 (late embryogenesis abundant protein D-34-like OS=Momordica charantia OX=3673 GN=LOC111009658 PE=3 SV=1)

HSP 1 Score: 134.4 bits (337), Expect = 4.1e-28
Identity = 89/169 (52.66%), Postives = 101/169 (59.76%), Query Frame = 0

Query: 9   EQLEPMV---LFNVSGDVVSKVIPPVDADMMQL-------------PRPWCLVKPRRPCR 68
           +Q EP+    +FNVSGD+ SK IPPVDADMMQ              P         R  R
Sbjct: 10  QQPEPIKYGDVFNVSGDLASKAIPPVDADMMQTAETMVFGHTQKGGPAAAMQSAATRNER 69

Query: 69  FGFVGLEDLTDATRDKELLLKTPISQEIASLLIQLARQIVGQFVEPAPIILVVIAMQSAV 128
            G VG ED++DA RD+ + +K         +   +A QIVGQFVEP P I  V  MQ+AV
Sbjct: 70  SGLVGHEDVSDAARDQGVAVKETDVPGSRIITETVAGQIVGQFVEPTPFIGAVTVMQNAV 129

Query: 129 TIGQALEATVHAAGDKP--QSDAAAFQAVEVRVKGSNAVIPGGLAACAQ 160
           TIGQ LEAT H AGDKP  QSDAAA QA EVR  GSN VIPGGLAA AQ
Sbjct: 130 TIGQTLEATAHTAGDKPVDQSDAAAIQAAEVRATGSNVVIPGGLAASAQ 178

BLAST of Carg05412 vs. ExPASy TrEMBL
Match: A0A0A0K7E4 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G234140 PE=3 SV=1)

HSP 1 Score: 129.4 bits (324), Expect = 1.3e-26
Identity = 83/159 (52.20%), Postives = 95/159 (59.75%), Query Frame = 0

Query: 16  LFNVSGDVVSKVIPPVDADMMQL-------------PRPWCLVKPRRPCRFGFVGLEDLT 75
           +FN++GD+ SKVIPPVDADMMQ              P         R    GFVG ED++
Sbjct: 20  VFNITGDLASKVIPPVDADMMQTAETIVFGRTQKGGPAATMQSAATRNELSGFVGHEDVS 79

Query: 76  DATRDKELLLKTPISQEIASLLIQLARQIVGQFVEPAPIILVVIAMQSAVTIGQALEATV 135
           DA RD+ + +K         +   +A QIVGQFVEP         MQ+AVTIGQALEAT 
Sbjct: 80  DAARDQGVAVKETDIPGSRIITETVAGQIVGQFVEPTSFFGAAAVMQNAVTIGQALEATA 139

Query: 136 HAAGDKP--QSDAAAFQAVEVRVKGSNAVIPGGLAACAQ 160
           H AGDKP  QSDAAA QA EVR  GSN VIPGGLAA AQ
Sbjct: 140 HTAGDKPVDQSDAAAIQAAEVRATGSNVVIPGGLAASAQ 178

BLAST of Carg05412 vs. ExPASy TrEMBL
Match: A0A5A7TCZ1 (Late embryogenesis abundant protein D-34-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold306G00210 PE=3 SV=1)

HSP 1 Score: 126.7 bits (317), Expect = 8.6e-26
Identity = 81/159 (50.94%), Postives = 97/159 (61.01%), Query Frame = 0

Query: 16  LFNVSGDVVSKVIPPVDADMMQLPRPWCLVKPRR--PC-----------RFGFVGLEDLT 75
           +FNV+GD+ SKVIPPVDADMMQ        + ++  P            R GFVG +D++
Sbjct: 20  VFNVTGDLASKVIPPVDADMMQTAETMVFGRTQKGGPAATMQSAATTNERSGFVGHKDVS 79

Query: 76  DATRDKELLLKTPISQEIASLLIQLARQIVGQFVEPAPIILVVIAMQSAVTIGQALEATV 135
           DA RD+ + +K         +   +A QIVGQFVEP         +Q+AVTIGQALEA  
Sbjct: 80  DAARDQGVAVKETDIPGSRIITETVAGQIVGQFVEPTSFFGAAAVVQNAVTIGQALEAIA 139

Query: 136 HAAGDKP--QSDAAAFQAVEVRVKGSNAVIPGGLAACAQ 160
           H AGDKP  QSDAAA QA EVR  GSN VIPGGLAA AQ
Sbjct: 140 HTAGDKPVDQSDAAAIQAAEVRATGSNVVIPGGLAASAQ 178

BLAST of Carg05412 vs. TAIR 10
Match: AT3G22490.1 (Seed maturation protein )

HSP 1 Score: 92.0 bits (227), Expect = 4.5e-19
Identity = 69/185 (37.30%), Postives = 95/185 (51.35%), Query Frame = 0

Query: 1   MSRTAAPHEQLEPMV---LFNVSGDVVSKVIPPVDADMMQLPRPWCLVKPRR-------- 60
           MS+   P    EP+    +F VSG++  K I P DA+MMQ          ++        
Sbjct: 1   MSQEEQPKRPQEPVTYGDVFEVSGELADKPIAPEDANMMQAAETRVFGHTQKGGAAAVMQ 60

Query: 61  -----PCRFGFVGLEDLTDATRDKELLLKTPISQEIASLLIQLARQIVGQFVEPAPII-- 120
                  R GFV   D TD   ++ + +              +  Q+VGQ+VEP P+   
Sbjct: 61  SAATANKRGGFVHPGDTTDLAAERGVTVAQTDVPGARVTTEFVGGQVVGQYVEPRPVATA 120

Query: 121 ------LVVIAMQSAVTIGQALEATVHAAGDKP--QSDAAAFQAVEVRVKGSNAVIPGGL 160
                 +V +++QSA+TIG+ALEATV  AG+KP  QSDAAA QA EVR  G+N + PGG+
Sbjct: 121 AAMEAEVVGLSLQSAITIGEALEATVQTAGNKPVDQSDAAAIQAAEVRACGTNVIAPGGI 180

BLAST of Carg05412 vs. TAIR 10
Match: AT3G22500.1 (Seed maturation protein )

HSP 1 Score: 78.6 bits (192), Expect = 5.1e-15
Identity = 61/172 (35.47%), Postives = 86/172 (50.00%), Query Frame = 0

Query: 7   PHEQLEPMVLFNVSGDVVSKVIPPVDADMMQL-------------PRPWCLVKPRRPCRF 66
           P E ++   +F VSG++  K I P DA MMQ              P            R 
Sbjct: 9   PREPVKYGDVFEVSGELADKPIAPEDAKMMQSAETHVFGHTQKGGPAAVMQSAATTNIRG 68

Query: 67  GFVGLEDLTDATRDKELLLKTPISQEIASLLIQLARQIVGQFVEPAPIILVV----IAMQ 126
           GFV  +D T+   ++   ++  +     +    +  Q+VGQ VEP  ++        A+Q
Sbjct: 69  GFVHPDDKTELVAERGATVEQTVPAATVTTEF-VGGQVVGQHVEPRRVVAAARTDEEALQ 128

Query: 127 SAVTIGQALEATVHAAGDKP--QSDAAAFQAVEVRVKGSNAVIPGGLAACAQ 160
           S +TIG+ALEATV  AG+KP  QSDAAA QA E+R  G+N +   G+AA AQ
Sbjct: 129 STITIGEALEATVKTAGNKPVDQSDAAAIQAAEMRASGTNVIALAGVAASAQ 179

BLAST of Carg05412 vs. TAIR 10
Match: AT5G27980.1 (Seed maturation protein )

HSP 1 Score: 50.8 bits (120), Expect = 1.1e-06
Identity = 31/66 (46.97%), Postives = 41/66 (62.12%), Query Frame = 0

Query: 96  VEPAPIILVVIAMQSAVTIGQALEATVHAAGDKP--QSDAAAFQAVEVRVKGSNAVIPGG 155
           V    ++   +  +  +TIG+ALEA V  AG+KP   SDAAA QA EVR  G   ++PGG
Sbjct: 52  VNQKKVVANPLKSEGTITIGEALEAAVLTAGNKPVEWSDAAAIQAAEVRATGRTNIMPGG 111

Query: 156 LAACAQ 160
           +AA AQ
Sbjct: 112 VAASAQ 117

BLAST of Carg05412 vs. TAIR 10
Match: AT1G03120.1 (responsive to abscisic acid 28 )

HSP 1 Score: 49.7 bits (117), Expect = 2.6e-06
Identity = 34/75 (45.33%), Postives = 46/75 (61.33%), Query Frame = 0

Query: 87  LARQIVGQFVEPAPIILVVIAMQSAVTIGQALEATVHAAGDKP--QSDAAAFQAVEVRVK 146
           +AR+    F +P P +  + ++ + VTIG+ALEAT  + GDKP  + DAAA QA E R  
Sbjct: 34  VARKQGDSFSQPDPTVATMGSVDT-VTIGEALEATALSLGDKPVDRRDAAAIQAAETRAT 93

Query: 147 GSNAVIPGGLAACAQ 160
           G +   PGGLA  AQ
Sbjct: 94  GESKGRPGGLAVAAQ 107

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
KAG6574978.12.6e-6186.79Late embryogenesis abundant protein 31, partial [Cucurbita argyrosperma subsp. s... [more]
XP_023514760.19.1e-3051.76late embryogenesis abundant protein D-34-like [Cucurbita pepo subsp. pepo][more]
XP_022930294.19.1e-3051.76late embryogenesis abundant protein D-34-like [Cucurbita moschata][more]
XP_022999952.12.0e-2951.76late embryogenesis abundant protein D-34-like [Cucurbita maxima][more]
KAG6593887.13.4e-2951.18hypothetical protein SDJN03_13363, partial [Cucurbita argyrosperma subsp. sorori... [more]
Match NameE-valueIdentityDescription
P094443.0e-2041.14Late embryogenesis abundant protein D-34 OS=Gossypium hirsutum OX=3635 PE=3 SV=1[more]
Q9LJ976.3e-1837.30Late embryogenesis abundant protein 31 OS=Arabidopsis thaliana OX=3702 GN=RAB28 ... [more]
Q9LJ957.2e-1435.47Late embryogenesis abundant protein 32 OS=Arabidopsis thaliana OX=3702 GN=ECP31 ... [more]
Q8GWT71.6e-0546.97Late embryogenesis abundant protein 47 OS=Arabidopsis thaliana OX=3702 GN=At5g27... [more]
Q9SA573.6e-0545.33Late embryogenesis abundant protein 3 OS=Arabidopsis thaliana OX=3702 GN=At1g031... [more]
Match NameE-valueIdentityDescription
A0A6J1ER334.4e-3051.76late embryogenesis abundant protein D-34-like OS=Cucurbita moschata OX=3662 GN=L... [more]
A0A6J1KC629.8e-3051.76late embryogenesis abundant protein D-34-like OS=Cucurbita maxima OX=3661 GN=LOC... [more]
A0A6J1C9L54.1e-2852.66late embryogenesis abundant protein D-34-like OS=Momordica charantia OX=3673 GN=... [more]
A0A0A0K7E41.3e-2652.20Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G234140 PE=3 SV=1[more]
A0A5A7TCZ18.6e-2650.94Late embryogenesis abundant protein D-34-like OS=Cucumis melo var. makuwa OX=119... [more]
Match NameE-valueIdentityDescription
AT3G22490.14.5e-1937.30Seed maturation protein [more]
AT3G22500.15.1e-1535.47Seed maturation protein [more]
AT5G27980.11.1e-0646.97Seed maturation protein [more]
AT1G03120.12.6e-0645.33responsive to abscisic acid 28 [more]
InterPro
Analysis Name: InterPro Annotations of Silver-seed gourd (SMH-JMG-627) v2
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR007011Late embryogenesis abundant protein, SMP subgroup domainPFAMPF04927SMPcoord: 112..159
e-value: 1.1E-10
score: 41.8
NoneNo IPR availablePANTHERPTHR31174:SF33BNAC03G42830D PROTEINcoord: 89..159
IPR042971Late embryogenesis abundant protein, SMP subgroupPANTHERPTHR31174SEED MATURATION FAMILY PROTEINcoord: 89..159

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Carg05412-RACarg05412-RAmRNA