Carg05331 (gene) Silver-seed gourd (SMH-JMG-627) v2

Overview


Name	Carg05331
Type	gene
Organism	Cucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
Description	SAM domain-containing protein
Location	Carg_Chr07: 4278458 .. 4278922 (-)
RNA-Seq Expression	Carg05331
Synteny	Carg05331

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGTGAAAACGAAACAAAGACAGAATATTACTCTTAGTCATCTTTCTGGCTCTTCAAACTCCATTGTTGGTTTGGATATGCACGGAGATGATAGTTGGGTGGTGGTAAAGAAGCAGATAGTCGCAATCCTAGTGCCTTCTATGGCGATAGCTCAAAAATCCTCAACCTCCATTGCTGGACAAAGTCAGCTGCAACCAATTGCCAAAGAAGTAACAAAATGCCAATCAGGAGCTCTTGAAAAGACATGTTTAGAAGTGTCCGCAGCTGTGCTGCCATCGGCTTCTAAAAATGTTAAGCTACTAAGTCTGAAACCTTCCCCTGTTCATTGTAATTTGACATTGAAAGAACCATTGAAGCAAGATATCATGCCCCAAAATCAAGATAAAGCTTTCAGTATCCAATTCGTGGGTATTTTCCAGAGAAAAGGTATCAATAAGTTTCAGCTGGTAAATCTAACACCATGA

mRNA sequence

ATGGTGAAAACGAAACAAAGACAGAATATTACTCTTAGTCATCTTTCTGGCTCTTCAAACTCCATTGTTGGTTTGGATATGCACGGAGATGATAGTTGGGTGGTGGTAAAGAAGCAGATAGTCGCAATCCTAGTGCCTTCTATGGCGATAGCTCAAAAATCCTCAACCTCCATTGCTGGACAAAGTCAGCTGCAACCAATTGCCAAAGAAGTAACAAAATGCCAATCAGGAGCTCTTGAAAAGACATGTTTAGAAGTGTCCGCAGCTGTGCTGCCATCGGCTTCTAAAAATGTTAAGCTACTAAGTCTGAAACCTTCCCCTGTTCATTGTAATTTGACATTGAAAGAACCATTGAAGCAAGATATCATGCCCCAAAATCAAGATAAAGCTTTCAGTATCCAATTCGTGGGTATTTTCCAGAGAAAAGGTATCAATAAGTTTCAGCTGGTAAATCTAACACCATGA

Coding sequence (CDS)

ATGGTGAAAACGAAACAAAGACAGAATATTACTCTTAGTCATCTTTCTGGCTCTTCAAACTCCATTGTTGGTTTGGATATGCACGGAGATGATAGTTGGGTGGTGGTAAAGAAGCAGATAGTCGCAATCCTAGTGCCTTCTATGGCGATAGCTCAAAAATCCTCAACCTCCATTGCTGGACAAAGTCAGCTGCAACCAATTGCCAAAGAAGTAACAAAATGCCAATCAGGAGCTCTTGAAAAGACATGTTTAGAAGTGTCCGCAGCTGTGCTGCCATCGGCTTCTAAAAATGTTAAGCTACTAAGTCTGAAACCTTCCCCTGTTCATTGTAATTTGACATTGAAAGAACCATTGAAGCAAGATATCATGCCCCAAAATCAAGATAAAGCTTTCAGTATCCAATTCGTGGGTATTTTCCAGAGAAAAGGTATCAATAAGTTTCAGCTGGTAAATCTAACACCATGA

Protein sequence

MVKTKQRQNITLSHLSGSSNSIVGLDMHGDDSWVVVKKQIVAILVPSMAIAQKSSTSIAGQSQLQPIAKEVTKCQSGALEKTCLEVSAAVLPSASKNVKLLSLKPSPVHCNLTLKEPLKQDIMPQNQDKAFSIQFVGIFQRKGINKFQLVNLTP

Homology

[Close]

BLAST of Carg05331 vs. NCBI nr
Match: KAG7027166.1 (hypothetical protein SDJN02_11177, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 294.7 bits (753), Expect = 4.7e-76
Identity = 154/154 (100.00%), Postives = 154/154 (100.00%), Query Frame = 0


Query: 1   MVKTKQRQNITLSHLSGSSNSIVGLDMHGDDSWVVVKKQIVAILVPSMAIAQKSSTSIAG 60
           MVKTKQRQNITLSHLSGSSNSIVGLDMHGDDSWVVVKKQIVAILVPSMAIAQKSSTSIAG
Sbjct: 1   MVKTKQRQNITLSHLSGSSNSIVGLDMHGDDSWVVVKKQIVAILVPSMAIAQKSSTSIAG 60

Query: 61  QSQLQPIAKEVTKCQSGALEKTCLEVSAAVLPSASKNVKLLSLKPSPVHCNLTLKEPLKQ 120
           QSQLQPIAKEVTKCQSGALEKTCLEVSAAVLPSASKNVKLLSLKPSPVHCNLTLKEPLKQ
Sbjct: 61  QSQLQPIAKEVTKCQSGALEKTCLEVSAAVLPSASKNVKLLSLKPSPVHCNLTLKEPLKQ 120

Query: 121 DIMPQNQDKAFSIQFVGIFQRKGINKFQLVNLTP 155
           DIMPQNQDKAFSIQFVGIFQRKGINKFQLVNLTP
Sbjct: 121 DIMPQNQDKAFSIQFVGIFQRKGINKFQLVNLTP 154

[Close]

BLAST of Carg05331 vs. NCBI nr
Match: KAG6595150.1 (hypothetical protein SDJN03_11703, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 189.5 bits (480), Expect = 2.2e-44
Identity = 102/103 (99.03%), Postives = 103/103 (100.00%), Query Frame = 0


Query: 1   MVKTKQRQNITLSHLSGSSNSIVGLDMHGDDSWVVVKKQIVAILVPSMAIAQKSSTSIAG 60
           MVKTKQRQNITLSHLSGSSNSIVGLDMHGDDSWVVVKKQIVAILVPSMAIAQKSSTSIAG
Sbjct: 84  MVKTKQRQNITLSHLSGSSNSIVGLDMHGDDSWVVVKKQIVAILVPSMAIAQKSSTSIAG 143

Query: 61  QSQLQPIAKEVTKCQSGALEKTCLEVSAAVLPSASKNVKLLSL 104
           QSQLQPIAKEVTKCQSGALEKTCLEVSAAVLPSASKNVKLL+L
Sbjct: 144 QSQLQPIAKEVTKCQSGALEKTCLEVSAAVLPSASKNVKLLNL 186

[Close]

BLAST of Carg05331 vs. NCBI nr
Match: XP_008462633.1 (PREDICTED: uncharacterized protein LOC103500944 [Cucumis melo])

HSP 1 Score: 155.6 bits (392), Expect = 3.4e-34
Identity = 80/132 (60.61%), Postives = 99/132 (75.00%), Query Frame = 0


Query: 1   MVKTKQRQNITLSHLSGSSNSIVGLDMHGDDSWVVVKKQIVAILVPSMAIAQKSSTSIAG 60
           MVKTKQ+QN   +HLSGSSN ++ LDMHGDDSWVVVKKQ + ILVP +++  KSST  AG
Sbjct: 1   MVKTKQKQNSNPNHLSGSSNYVIDLDMHGDDSWVVVKKQKITILVPPISVVTKSSTPDAG 60

Query: 61  QSQLQPIAKEVTKCQSGALEKTCLEVSAAVLPSASKNVKLLSLKPSPVHCNLTLKEPLKQ 120
           QSQLQPI ++V+ CQ+GALE+T +E  A VLPS+S+N    S K +  HC LT KEPLKQ
Sbjct: 61  QSQLQPITQKVSNCQTGALEETRIEAPANVLPSSSENANQQSSKSAAAHCTLTRKEPLKQ 120

Query: 121 DIMPQNQDKAFS 133
            + P N D AF+
Sbjct: 121 AVTPPNPDNAFN 132

[Close]

BLAST of Carg05331 vs. NCBI nr
Match: KAA0025210.1 (Sterile alpha motif domain-containing protein, putative isoform 1 [Cucumis melo var. makuwa] >TYK07456.1 Sterile alpha motif domain-containing protein, putative isoform 1 [Cucumis melo var. makuwa])

HSP 1 Score: 155.6 bits (392), Expect = 3.4e-34
Identity = 80/132 (60.61%), Postives = 99/132 (75.00%), Query Frame = 0


Query: 1   MVKTKQRQNITLSHLSGSSNSIVGLDMHGDDSWVVVKKQIVAILVPSMAIAQKSSTSIAG 60
           MVKTKQ+QN   +HLSGSSN ++ LDMHGDDSWVVVKKQ + ILVP +++  KSST  AG
Sbjct: 1   MVKTKQKQNSNPNHLSGSSNYVIDLDMHGDDSWVVVKKQKITILVPPISVVTKSSTPDAG 60

Query: 61  QSQLQPIAKEVTKCQSGALEKTCLEVSAAVLPSASKNVKLLSLKPSPVHCNLTLKEPLKQ 120
           QSQLQPI ++V+ CQ+GALE+T +E  A VLPS+S+N    S K +  HC LT KEPLKQ
Sbjct: 61  QSQLQPITQKVSNCQTGALEETRIEAPANVLPSSSENANQQSSKSAAAHCTLTRKEPLKQ 120

Query: 121 DIMPQNQDKAFS 133
            + P N D AF+
Sbjct: 121 AVTPPNPDNAFN 132

[Close]

BLAST of Carg05331 vs. NCBI nr
Match: XP_022925561.1 (uncharacterized protein LOC111432962 [Cucurbita moschata] >XP_022925562.1 uncharacterized protein LOC111432962 [Cucurbita moschata])

HSP 1 Score: 151.4 bits (381), Expect = 6.5e-33
Identity = 99/216 (45.83%), Postives = 115/216 (53.24%), Query Frame = 0


Query: 1   MVKTKQRQNITLSHLSGSSNSIVGLDMHGDDSWVVVKKQIVAILVPSMAIAQKSSTSIAG 60
           MVKTKQRQN    HLSGSSNS + LD+HGDDSWVVVKKQ V ILVP  +I  KSS+  AG
Sbjct: 1   MVKTKQRQNSNPIHLSGSSNSDIDLDLHGDDSWVVVKKQKVTILVPPTSIVTKSSSPNAG 60

Query: 61  QSQLQPIAKEVTKCQSGALEKTCLEVSAAVLPSASKNVKLLSLKPSPVHCNLTLKEPLKQ 120
           QSQLQPI ++V+ CQ+GALE+TCLE  A  LPS SKNVK    +    HCN T+KEPLKQ
Sbjct: 61  QSQLQPITQKVSNCQAGALEETCLEAPAVQLPSTSKNVK----QSVAAHCNSTVKEPLKQ 120

Query: 121 DIMPQNQDKAFSI----------------------------------------------- 154
            + P N D+A +                                                
Sbjct: 121 AVTP-NPDEACNSRPCKVSGLLNSAKSMKQPTHLHCPGGFLTGSTLLNQRLRALNLERKL 180

[Close]

BLAST of Carg05331 vs. ExPASy TrEMBL
Match: A0A5D3CAT4 (Sterile alpha motif domain-containing protein, putative isoform 1 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold202G001870 PE=4 SV=1)

HSP 1 Score: 155.6 bits (392), Expect = 1.7e-34
Identity = 80/132 (60.61%), Postives = 99/132 (75.00%), Query Frame = 0


Query: 1   MVKTKQRQNITLSHLSGSSNSIVGLDMHGDDSWVVVKKQIVAILVPSMAIAQKSSTSIAG 60
           MVKTKQ+QN   +HLSGSSN ++ LDMHGDDSWVVVKKQ + ILVP +++  KSST  AG
Sbjct: 1   MVKTKQKQNSNPNHLSGSSNYVIDLDMHGDDSWVVVKKQKITILVPPISVVTKSSTPDAG 60

Query: 61  QSQLQPIAKEVTKCQSGALEKTCLEVSAAVLPSASKNVKLLSLKPSPVHCNLTLKEPLKQ 120
           QSQLQPI ++V+ CQ+GALE+T +E  A VLPS+S+N    S K +  HC LT KEPLKQ
Sbjct: 61  QSQLQPITQKVSNCQTGALEETRIEAPANVLPSSSENANQQSSKSAAAHCTLTRKEPLKQ 120

Query: 121 DIMPQNQDKAFS 133
            + P N D AF+
Sbjct: 121 AVTPPNPDNAFN 132

[Close]

BLAST of Carg05331 vs. ExPASy TrEMBL
Match: A0A1S3CIZ6 (uncharacterized protein LOC103500944 OS=Cucumis melo OX=3656 GN=LOC103500944 PE=4 SV=1)

HSP 1 Score: 155.6 bits (392), Expect = 1.7e-34
Identity = 80/132 (60.61%), Postives = 99/132 (75.00%), Query Frame = 0


Query: 1   MVKTKQRQNITLSHLSGSSNSIVGLDMHGDDSWVVVKKQIVAILVPSMAIAQKSSTSIAG 60
           MVKTKQ+QN   +HLSGSSN ++ LDMHGDDSWVVVKKQ + ILVP +++  KSST  AG
Sbjct: 1   MVKTKQKQNSNPNHLSGSSNYVIDLDMHGDDSWVVVKKQKITILVPPISVVTKSSTPDAG 60

Query: 61  QSQLQPIAKEVTKCQSGALEKTCLEVSAAVLPSASKNVKLLSLKPSPVHCNLTLKEPLKQ 120
           QSQLQPI ++V+ CQ+GALE+T +E  A VLPS+S+N    S K +  HC LT KEPLKQ
Sbjct: 61  QSQLQPITQKVSNCQTGALEETRIEAPANVLPSSSENANQQSSKSAAAHCTLTRKEPLKQ 120

Query: 121 DIMPQNQDKAFS 133
            + P N D AF+
Sbjct: 121 AVTPPNPDNAFN 132

[Close]

BLAST of Carg05331 vs. ExPASy TrEMBL
Match: A0A6J1ECJ6 (uncharacterized protein LOC111432962 OS=Cucurbita moschata OX=3662 GN=LOC111432962 PE=4 SV=1)

HSP 1 Score: 151.4 bits (381), Expect = 3.1e-33
Identity = 99/216 (45.83%), Postives = 115/216 (53.24%), Query Frame = 0


Query: 1   MVKTKQRQNITLSHLSGSSNSIVGLDMHGDDSWVVVKKQIVAILVPSMAIAQKSSTSIAG 60
           MVKTKQRQN    HLSGSSNS + LD+HGDDSWVVVKKQ V ILVP  +I  KSS+  AG
Sbjct: 1   MVKTKQRQNSNPIHLSGSSNSDIDLDLHGDDSWVVVKKQKVTILVPPTSIVTKSSSPNAG 60

Query: 61  QSQLQPIAKEVTKCQSGALEKTCLEVSAAVLPSASKNVKLLSLKPSPVHCNLTLKEPLKQ 120
           QSQLQPI ++V+ CQ+GALE+TCLE  A  LPS SKNVK    +    HCN T+KEPLKQ
Sbjct: 61  QSQLQPITQKVSNCQAGALEETCLEAPAVQLPSTSKNVK----QSVAAHCNSTVKEPLKQ 120

Query: 121 DIMPQNQDKAFSI----------------------------------------------- 154
            + P N D+A +                                                
Sbjct: 121 AVTP-NPDEACNSRPCKVSGLLNSAKSMKQPTHLHCPGGFLTGSTLLNQRLRALNLERKL 180

[Close]

BLAST of Carg05331 vs. ExPASy TrEMBL
Match: A0A6J1BU16 (uncharacterized protein LOC111005550 OS=Momordica charantia OX=3673 GN=LOC111005550 PE=4 SV=1)

HSP 1 Score: 149.8 bits (377), Expect = 9.1e-33
Identity = 101/216 (46.76%), Postives = 114/216 (52.78%), Query Frame = 0


Query: 1   MVKTKQRQNITLSHLSGSSNSIVGLDMHGDDSWVVVKKQIVAILVPSMAIAQKSSTSIAG 60
           MVKTKQRQN   SHLSGSSNS++GLD+HGDDSWVVVKKQ V ILVP  +I +KSST  AG
Sbjct: 1   MVKTKQRQNNNPSHLSGSSNSVIGLDLHGDDSWVVVKKQKVTILVPPSSIVRKSSTPNAG 60

Query: 61  QSQLQPIAKEVTKCQSGALEKTCLEVSAAVLPSASKNVKLLSLKPSPVHCNLTLKEPLKQ 120
           QSQLQPI          +LE+ CLEV AAVLP +SKNVK  + K +P H  LT  EPLKQ
Sbjct: 61  QSQLQPI----------SLEEKCLEVPAAVLPLSSKNVKPRTSKSAPPHHILTSNEPLKQ 120

Query: 121 DIMPQNQDKAFSI----------------------------------------------- 154
              PQ+ D+A +                                                
Sbjct: 121 ATRPQSPDEACNSGPSKVLGVVNATKPMLQPRRLHCPDSFLSGGTLLNLRLRALNLERKL 180

[Close]

BLAST of Carg05331 vs. ExPASy TrEMBL
Match: A0A0A0KF34 (SAM domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_6G476650 PE=4 SV=1)

HSP 1 Score: 149.8 bits (377), Expect = 9.1e-33
Identity = 94/217 (43.32%), Postives = 112/217 (51.61%), Query Frame = 0


Query: 1   MVKTKQRQNITLSHLSGSSNSIVGLDMHGDDSWVVVKKQIVAILVPSMAIAQKSSTSIAG 60
           MVKTKQ+QN + +HLSGSSNS++ LDMHGDD WVVVKKQ V ILVP ++I  KS+     
Sbjct: 1   MVKTKQKQNSSPNHLSGSSNSVIDLDMHGDDGWVVVKKQKVTILVPPISIVTKSAPPNVE 60

Query: 61  QSQLQPIAKEVTKCQSGALEKTCLEVSAAVLPSASKNVKLLSLKPSPVHCNLTLKEPLKQ 120
           QSQLQPI ++V+ CQ+GAL +TCLE  A VL S S+N    S K +  HC LT KEPLKQ
Sbjct: 61  QSQLQPITQKVSNCQTGALVETCLEAPANVLLSTSENANQQSSKSAAAHCTLTRKEPLKQ 120

Query: 121 DIMPQNQDKAFSI----------------------------------------------- 154
            + P N D  F+                                                
Sbjct: 121 AVTPPNPDNVFNSRSYKVLGLSNSTKSMKQQPRQLHCPGGFLTGGTLLNLRLRALNLERN 180

The following BLAST results are available for this feature:

BLAST of Carg05331 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG7027166.1	4.7e-76	100.00	hypothetical protein SDJN02_11177, partial [Cucurbita argyrosperma subsp. argyro...	[more]
KAG6595150.1	2.2e-44	99.03	hypothetical protein SDJN03_11703, partial [Cucurbita argyrosperma subsp. sorori...	[more]
XP_008462633.1	3.4e-34	60.61	PREDICTED: uncharacterized protein LOC103500944 [Cucumis melo]	[more]
KAA0025210.1	3.4e-34	60.61	Sterile alpha motif domain-containing protein, putative isoform 1 [Cucumis melo ...	[more]
XP_022925561.1	6.5e-33	45.83	uncharacterized protein LOC111432962 [Cucurbita moschata] >XP_022925562.1 unchar...	[more]

BLAST of Carg05331 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of Carg05331 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5D3CAT4	1.7e-34	60.61	Sterile alpha motif domain-containing protein, putative isoform 1 OS=Cucumis mel...	[more]
A0A1S3CIZ6	1.7e-34	60.61	uncharacterized protein LOC103500944 OS=Cucumis melo OX=3656 GN=LOC103500944 PE=...	[more]
A0A6J1ECJ6	3.1e-33	45.83	uncharacterized protein LOC111432962 OS=Cucurbita moschata OX=3662 GN=LOC1114329...	[more]
A0A6J1BU16	9.1e-33	46.76	uncharacterized protein LOC111005550 OS=Momordica charantia OX=3673 GN=LOC111005...	[more]
A0A0A0KF34	9.1e-33	43.32	SAM domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_6G476650 PE=4 SV...	[more]

BLAST of Carg05331 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Silver-seed gourd (SMH-JMG-627) v2
Date Performed: 2021-10-25

Position :

Zoom :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR10627	SCP160	coord: 1..117
None	No IPR available	PANTHER	PTHR10627:SF68	F26K24.15 PROTEIN-RELATED	coord: 1..117

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Carg05331-RA	Carg05331-RA	mRNA