Carg05324 (gene) Silver-seed gourd (SMH-JMG-627) v2

Overview


Name	Carg05324
Type	gene
Organism	Cucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
Description	50S ribosomal protein L21
Location	Carg_Chr07: 4225497 .. 4229081 (+)
RNA-Seq Expression	Carg05324
Synteny	Carg05324

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

GATGTAAATTTATAATTTTAAGAATTTTTGAAAGTAAGACCGTCGTTGATTCCAAAAACCCTCACTCACAGGTCCCAAAACCCTCACCTCCAGCTATCGTCTCCACCACCGACGGCGATAATGTTGCACCTGTGGGCTTCCTCCTCCGTCCTGCAAGAACCGTCGACTATCCTCTGTAAGTTTCTTGAATTTTCAACAATTCTCTCTCTCACTGTCTTACTTTGAAAATGATCATTTGGTTCTGGAAGATTATGTGTAAATCTTGTTCCTCGTCTTTTGCTGTGGTTTTGAGATTGGAGGTGGGTTAGATCAGATTTCTCTTTGCTCTAATCTGAGTTTCGTTGATTTGAATTGATCCTCTATCCTTGTTGCGGGTTGTGCGAGTTGACATTCTTCCTTTTCTGTCTCCATGTTTCGAGCTCGCCTTGTGTGTATTAAGCCGCCTCACCCTTTGGTAATTAGGGTTTGATTTCATTATTTTTACATGTCCTTGCCGCATTGAAGCATTTCTACTCCTTGTTGCCTTGCTGTCGCCGCTCGCCGCGCGAATGATGTTAGAGCAGAGAGGAAGAGCGATGTTGATATTGCGGAGAAGAAGAAAGCGGGAAAGTTGAGGATTGATGAACTTGACCAATAAACCCGAACCAGAGTGAATCAAACTGCCTGAGTTTCTAAATAATGTTTGGATTGATCCCGCTTATCCATATGATCAAGCCGACGATCATTTTTTATATTATAACAAAAAACTGAATTGAATCTGGATTGCAAAAACTTCTATGTTTTCAACATGGATAAGAGTGTTAGACTTCTAGGAAACGTTGGTTTAGTTGTGTTTTTATTTTCTGTCTGCAGATTGAGAAGGTTAGAAGATTGATGCAGCTTGTGTAGTGTAGTGAACTATAAGTCAAAGGCCATAACGACCACCGCCATGGCAAACAGACGGTGTGTACAAGTACTAACTCGTCATGCCTCGGCCATTTTTTCTGGAAAGCCATATATCCACTCGCTGAAAATCACATCTTCCTTCCTCTACCACAATTACCATACACGTGCCTCTACATCAACCTATCTTTGTACTAAAACTGATCCTTTGTGTAAGTGCTGGTCACACTCCCAATATCTCTCATCTGATAGTCGTAATGGCAATGACGATGATGATACTGAAGAAGATGAAGATGAAGATGAAGAAGCATATGATAGTAGTGAGGATGATGGTATTTCGGGGTTGAGTAGGGGTATGCAGAAGGAGTATACAAAGGAGGAGAAGGAGGCAGAAGCGGCTGATATTGGATATAAAGTAGTTGGGCCACTTGATCGATCTGATGGTGTTTTCAAGGGTTATGAGCCTGTTTTTGCTGTTGTTCAGGTGCAAACTTGTGGCATGGCTTCATGAGTTTTTTGAATTAATGGTTGGATACTTATCATTTATGCACTCTTTTCTTTTGGCTGTTTCTGTAGATTGGCTCACACCAATTCAAGGTTAGCAATGGAGACAGTATTTTTACCGAAAGATTAAAATTCTGCGATGTGAATGACAAGGTTCGTAACTCCTATTCCATTTTCCATTGTGGATGTTTCAGTTATCGTTATTTCTTTTTTTCTTCTTTTTTTTTTTAAAACTTGCATCCTAGCCTTCGTCCATGTTCTACATGGTCTCCCGCTTGAATGAGCCCCCCATCTGTTTTGACACTGCCTCTTTAAATGGCGTTGAACACGGAAGCAATTTTTGGGACCTAGAATTAAAATGTTGTTTGATTTAAGACTGTACTCATATTTTTTATATTCTGCTATTGTTTCCAGGTTGTAATTAACTAAGCTAAAGTTTGTGGTACTTCTATGATGTTTAATGGTTACAAAGATTCGACTTAAACATTAATTTGATAGGCTGCAGAGCAGTTTTTGGGTGAATTAGTATAGAAGAGCCCTTTTTTGGGACAGTGTGTGAAAGCTTAGAAAGGCTTCTAAAAAGCAACTGTTTTACATACATGAAAAGTTGCACCCTTCAGGTTGTCATAGACGAGGCTAAATTAAGTAGTCATGTACTTTGTTTCATGAGAAGTATCGCTTCAAGCAAATTAAAGAACGAGGAAAATATGAAATTTATCTTTTGGTAGCTTTTATTTAAGTTATTGTTACTCACTTGTGAGCACAAGAGGATCTTTTCTGCAATTTCTATTGCCCATTTTCCTTGTCAGACTTGAATGCGCTTTTGTAGATTTTCTCATGTTTGTTGTTATATCTTGCGCAGTTTAGGATTCTGTGTTGAATTTTTAACCTTTTCTGTACTTCATCTTGAGCAAGCTTTAATGAATTTTCCTTTTTAATAAATGGATTTATCTTTTGCAGTTGATATTGAATAGGGTCCTCATGCTTGGCTCAAGTAGCCAAACGATTGTAGGCAGGCCAACAATCCCAAGTGCAGTTGTTCAAGCAGTTGTTGAGGAACATGTAAGCGTGACGGCGAAACTATTTGCTTTTTGTTGTTAATGCATTATATTATAAACAATTTTACTGTTGTGTTCTTTCTGATGTGCATTGTTCTCTAGTGATTCTCGTGGACCATTGCAATGCATTTTTTAAGGACTAGTTCTCTAGTTCTTTATGCGCTTTATTAAATATACTTCTAGTCTTAGCCGCATTTGGGAACTTATACATTAAATGGATTTAGACAACGCAATTGTTAAAATAGGAAGATCCAATTTGTTAGTCAGGGGGAAAGATTTACATTCTAGTTTTATTATATCCATCAGGTTAGAAGAAAGTAATAAAATCTGGAGACTTTACAATGTTCAGAAGAATTCAAAAGGCAATTTCTTCGAGCAATTATTGCTTAAAAAATTTGTGAATGACAGAGGGCTTTGGTATATGAATTAGCCGAGTTGGCAATAAGTGTAATATGTTGCAGTACTTTATTTTCTATGATCATATCATATTAACTGTGTTGCTCTGTGACTCTGGTTGGTCTGCTGAGTGTAAATTTTTCTTTCCTGGCTCTCTTTATTTGTTTCAAATTCCCAACGACATATTTCTTGAAAGTCCAATTCTCAAATTTGTGTTCCAATTCGTAAAATCTGAATCCTTTTTCCTCCTTTTCTGAAGGCCTTAGATGCAAAAGTAATCATCTTCAAGAAAAAAAGGAGGAAGAATTACCGCCGAACCAAAGGACACCGCCAGGTATATCCTATTCCTATCCAGACTTTCCAGAAAGAAGTAAAAAGTTTATTATCCAAGTTTTCTGATGATCCTTTCTGGCAACATTTTATATCTTAGGAATTAACAAAGTTGAGGATCATCGATATCCAAGGTATTGACAAACCAGAAAACATTGGAAAGCCTTCCAAAACAGCTGATAAGAAGCAAGAAAAAGTTGCAGTAGCTGCTTAGAAGAAGGTTCCATGATTCTAACTAACTGGAACTGCTAAGTGGGTGTAGCTTTTTCTGATGTCATATGATATACTATACTTGATTCTAATTCTTTGATAGTGCGTCTTAGGCATGTTTTGTAGGAATGCCACTTTACTATGATTCCCATCCTTTTTGTTCCTCGACCTTTTCTAAAAAAATTGTTGTCATCATACATTTGTC

mRNA sequence

GATGTAAATTTATAATTTTAAGAATTTTTGAAAGTAAGACCGTCGTTGATTCCAAAAACCCTCACTCACAGGTCCCAAAACCCTCACCTCCAGCTATCGTCTCCACCACCGACGGCGATAATGTTGCACCTGTGGGCTTCCTCCTCCGTCCTGCAAGAACCGTCGACTATCCTCTCATTTCTACTCCTTGTTGCCTTGCTGTCGCCGCTCGCCGCGCGAATGATGTTAGAGCAGAGAGGAAGAGCGATGTTGATATTGCGGAGAAGAAGAAAGCGGGAAAGTTGAGGATTGATGAACTTGACCAATAAACCCGAACCAGAGTGAATCAAACTGCCTGAGTTTCTAAATAATGTTTGGATTGATCCCGCTTATCCATATGATCAAGCCGACGATCATTTTTTATATTATAACAAAAAACTGAATTGAATCTGGATTGCAAAAACTTCTATGTTTTCAACATGGATAAGAGTGTTAGACTTCTAGGAAACGTTGGTTTAGTTGTGTTTTTATTTTCTGTCTGCAGATTGAGAAGGTTAGAAGATTGATGCAGCTTGTGTAGTGTAGTGAACTATAAGTCAAAGGCCATAACGACCACCGCCATGGCAAACAGACGGTGTGTACAAGTACTAACTCGTCATGCCTCGGCCATTTTTTCTGGAAAGCCATATATCCACTCGCTGAAAATCACATCTTCCTTCCTCTACCACAATTACCATACACGTGCCTCTACATCAACCTATCTTTGTACTAAAACTGATCCTTTGTGTAAGTGCTGGTCACACTCCCAATATCTCTCATCTGATAGTCGTAATGGCAATGACGATGATGATACTGAAGAAGATGAAGATGAAGATGAAGAAGCATATGATAGTAGTGAGGATGATGGTATTTCGGGGTTGAGTAGGGGTATGCAGAAGGAGTATACAAAGGAGGAGAAGGAGGCAGAAGCGGCTGATATTGGATATAAAGTAGTTGGGCCACTTGATCGATCTGATGGTGTTTTCAAGGGTTATGAGCCTGTTTTTGCTGTTGTTCAGATTGGCTCACACCAATTCAAGGTTAGCAATGGAGACAGTATTTTTACCGAAAGATTAAAATTCTGCGATGTGAATGACAAGTTGATATTGAATAGGGTCCTCATGCTTGGCTCAAGTAGCCAAACGATTGTAGGCAGGCCAACAATCCCAAGTGCAGTTGTTCAAGCAGTTGTTGAGGAACATGCCTTAGATGCAAAAGTAATCATCTTCAAGAAAAAAAGGAGGAAGAATTACCGCCGAACCAAAGGACACCGCCAGGAATTAACAAAGTTGAGGATCATCGATATCCAAGGTATTGACAAACCAGAAAACATTGGAAAGCCTTCCAAAACAGCTGATAAGAAGCAAGAAAAAGTTGCAGTAGCTGCTTAGAAGAAGGTTCCATGATTCTAACTAACTGGAACTGCTAAGTGGGTGTAGCTTTTTCTGATGTCATATGATATACTATACTTGATTCTAATTCTTTGATAGTGCGTCTTAGGCATGTTTTGTAGGAATGCCACTTTACTATGATTCCCATCCTTTTTGTTCCTCGACCTTTTCTAAAAAAATTGTTGTCATCATACATTTGTC

Coding sequence (CDS)

ATGGCAAACAGACGGTGTGTACAAGTACTAACTCGTCATGCCTCGGCCATTTTTTCTGGAAAGCCATATATCCACTCGCTGAAAATCACATCTTCCTTCCTCTACCACAATTACCATACACGTGCCTCTACATCAACCTATCTTTGTACTAAAACTGATCCTTTGTGTAAGTGCTGGTCACACTCCCAATATCTCTCATCTGATAGTCGTAATGGCAATGACGATGATGATACTGAAGAAGATGAAGATGAAGATGAAGAAGCATATGATAGTAGTGAGGATGATGGTATTTCGGGGTTGAGTAGGGGTATGCAGAAGGAGTATACAAAGGAGGAGAAGGAGGCAGAAGCGGCTGATATTGGATATAAAGTAGTTGGGCCACTTGATCGATCTGATGGTGTTTTCAAGGGTTATGAGCCTGTTTTTGCTGTTGTTCAGATTGGCTCACACCAATTCAAGGTTAGCAATGGAGACAGTATTTTTACCGAAAGATTAAAATTCTGCGATGTGAATGACAAGTTGATATTGAATAGGGTCCTCATGCTTGGCTCAAGTAGCCAAACGATTGTAGGCAGGCCAACAATCCCAAGTGCAGTTGTTCAAGCAGTTGTTGAGGAACATGCCTTAGATGCAAAAGTAATCATCTTCAAGAAAAAAAGGAGGAAGAATTACCGCCGAACCAAAGGACACCGCCAGGAATTAACAAAGTTGAGGATCATCGATATCCAAGGTATTGACAAACCAGAAAACATTGGAAAGCCTTCCAAAACAGCTGATAAGAAGCAAGAAAAAGTTGCAGTAGCTGCTTAG

Protein sequence

MANRRCVQVLTRHASAIFSGKPYIHSLKITSSFLYHNYHTRASTSTYLCTKTDPLCKCWSHSQYLSSDSRNGNDDDDTEEDEDEDEEAYDSSEDDGISGLSRGMQKEYTKEEKEAEAADIGYKVVGPLDRSDGVFKGYEPVFAVVQIGSHQFKVSNGDSIFTERLKFCDVNDKLILNRVLMLGSSSQTIVGRPTIPSAVVQAVVEEHALDAKVIIFKKKRRKNYRRTKGHRQELTKLRIIDIQGIDKPENIGKPSKTADKKQEKVAVAA

Homology

[Close]

BLAST of Carg05324 vs. NCBI nr
Match: KAG7027159.1 (50S ribosomal protein L21, mitochondrial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 519.2 bits (1336), Expect = 2.1e-143
Identity = 269/269 (100.00%), Postives = 269/269 (100.00%), Query Frame = 0


Query: 1   MANRRCVQVLTRHASAIFSGKPYIHSLKITSSFLYHNYHTRASTSTYLCTKTDPLCKCWS 60
           MANRRCVQVLTRHASAIFSGKPYIHSLKITSSFLYHNYHTRASTSTYLCTKTDPLCKCWS
Sbjct: 1   MANRRCVQVLTRHASAIFSGKPYIHSLKITSSFLYHNYHTRASTSTYLCTKTDPLCKCWS 60

Query: 61  HSQYLSSDSRNGNDDDDTEEDEDEDEEAYDSSEDDGISGLSRGMQKEYTKEEKEAEAADI 120
           HSQYLSSDSRNGNDDDDTEEDEDEDEEAYDSSEDDGISGLSRGMQKEYTKEEKEAEAADI
Sbjct: 61  HSQYLSSDSRNGNDDDDTEEDEDEDEEAYDSSEDDGISGLSRGMQKEYTKEEKEAEAADI 120

Query: 121 GYKVVGPLDRSDGVFKGYEPVFAVVQIGSHQFKVSNGDSIFTERLKFCDVNDKLILNRVL 180
           GYKVVGPLDRSDGVFKGYEPVFAVVQIGSHQFKVSNGDSIFTERLKFCDVNDKLILNRVL
Sbjct: 121 GYKVVGPLDRSDGVFKGYEPVFAVVQIGSHQFKVSNGDSIFTERLKFCDVNDKLILNRVL 180

Query: 181 MLGSSSQTIVGRPTIPSAVVQAVVEEHALDAKVIIFKKKRRKNYRRTKGHRQELTKLRII 240
           MLGSSSQTIVGRPTIPSAVVQAVVEEHALDAKVIIFKKKRRKNYRRTKGHRQELTKLRII
Sbjct: 181 MLGSSSQTIVGRPTIPSAVVQAVVEEHALDAKVIIFKKKRRKNYRRTKGHRQELTKLRII 240

Query: 241 DIQGIDKPENIGKPSKTADKKQEKVAVAA 270
           DIQGIDKPENIGKPSKTADKKQEKVAVAA
Sbjct: 241 DIQGIDKPENIGKPSKTADKKQEKVAVAA 269

[Close]

BLAST of Carg05324 vs. NCBI nr
Match: XP_022963236.1 (50S ribosomal protein L21, mitochondrial-like [Cucurbita moschata] >XP_022963238.1 50S ribosomal protein L21, mitochondrial-like [Cucurbita moschata] >XP_022963239.1 50S ribosomal protein L21, mitochondrial-like [Cucurbita moschata])

HSP 1 Score: 506.1 bits (1302), Expect = 1.8e-139
Identity = 265/273 (97.07%), Postives = 266/273 (97.44%), Query Frame = 0


Query: 1   MANRRCVQVLTRHASAIFSGKPYIHSLKITSSFLYHNYHTRASTSTYLCTKTDPLCKCWS 60
           MANRRCVQVLTRHASAIFSGKPYIHSLKITSSFLY NYHTRASTSTYLCTKTDPLCKCW 
Sbjct: 1   MANRRCVQVLTRHASAIFSGKPYIHSLKITSSFLYQNYHTRASTSTYLCTKTDPLCKCWP 60

Query: 61  HSQYLSSDSRNGNDDDDTE----EDEDEDEEAYDSSEDDGISGLSRGMQKEYTKEEKEAE 120
           HSQYLSSDSRNGNDDDDTE    EDEDEDEEAYDSSEDDGISGLSRGMQKEYTKEEKEAE
Sbjct: 61  HSQYLSSDSRNGNDDDDTEEDEDEDEDEDEEAYDSSEDDGISGLSRGMQKEYTKEEKEAE 120

Query: 121 AADIGYKVVGPLDRSDGVFKGYEPVFAVVQIGSHQFKVSNGDSIFTERLKFCDVNDKLIL 180
           AADIGYKVVGPLDRSDGVFKGYEPVFAVVQIGSHQFKVSNGDSIFTERLKFCDVNDKLIL
Sbjct: 121 AADIGYKVVGPLDRSDGVFKGYEPVFAVVQIGSHQFKVSNGDSIFTERLKFCDVNDKLIL 180

Query: 181 NRVLMLGSSSQTIVGRPTIPSAVVQAVVEEHALDAKVIIFKKKRRKNYRRTKGHRQELTK 240
           NRVLMLGSSSQTIVGRPTIPSAVVQAVVEEHALDAK+IIFKKKRRKNYRRTKGHRQELTK
Sbjct: 181 NRVLMLGSSSQTIVGRPTIPSAVVQAVVEEHALDAKIIIFKKKRRKNYRRTKGHRQELTK 240

Query: 241 LRIIDIQGIDKPENIGKPSKTADKKQEKVAVAA 270
           LRIIDIQGIDKPENIGKPSKTADKKQEK AVAA
Sbjct: 241 LRIIDIQGIDKPENIGKPSKTADKKQEKFAVAA 273

[Close]

BLAST of Carg05324 vs. NCBI nr
Match: XP_023518436.1 (50S ribosomal protein L21, mitochondrial-like [Cucurbita pepo subsp. pepo] >XP_023518437.1 50S ribosomal protein L21, mitochondrial-like [Cucurbita pepo subsp. pepo] >XP_023518438.1 50S ribosomal protein L21, mitochondrial-like [Cucurbita pepo subsp. pepo] >XP_023518439.1 50S ribosomal protein L21, mitochondrial-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 498.4 bits (1282), Expect = 3.8e-137
Identity = 266/274 (97.08%), Postives = 266/274 (97.08%), Query Frame = 0


Query: 1   MANRRCVQVLTRHASAIFSGKPYIHSLKITSSFLYHNY-HTRASTSTYLCTKTDPLCKCW 60
           MANRRCVQVLTRHASAIFSGKPYIHSLKITSSFLY NY HTRASTSTYL TKTDPLCKCW
Sbjct: 1   MANRRCVQVLTRHASAIFSGKPYIHSLKITSSFLYQNYHHTRASTSTYLFTKTDPLCKCW 60

Query: 61  SHSQYLSSDSRNGNDDDDTE----EDEDEDEEAYDSSEDDGISGLSRGMQKEYTKEEKEA 120
           SHSQYLSSDSRNGNDDDDTE    EDEDEDEEAYDSSEDDGISGLSRGMQKEYTKEEKEA
Sbjct: 61  SHSQYLSSDSRNGNDDDDTEEDEDEDEDEDEEAYDSSEDDGISGLSRGMQKEYTKEEKEA 120

Query: 121 EAADIGYKVVGPLDRSDGVFKGYEPVFAVVQIGSHQFKVSNGDSIFTERLKFCDVNDKLI 180
           EAADIGYKVVGPLDRSDGVFKGYEPVFAVVQIGSHQFKVSNGDSIFTERLKFCDVNDKLI
Sbjct: 121 EAADIGYKVVGPLDRSDGVFKGYEPVFAVVQIGSHQFKVSNGDSIFTERLKFCDVNDKLI 180

Query: 181 LNRVLMLGSSSQTIVGRPTIPSAVVQAVVEEHALDAKVIIFKKKRRKNYRRTKGHRQELT 240
           LNRVLMLGSSSQTIVGRPTIPSAVVQAVVEEHALDAKVIIFKKKRRKNYRRTKGHRQELT
Sbjct: 181 LNRVLMLGSSSQTIVGRPTIPSAVVQAVVEEHALDAKVIIFKKKRRKNYRRTKGHRQELT 240

Query: 241 KLRIIDIQGIDKPENIGKPSKTADKKQEKVAVAA 270
           KLRIIDIQGIDKPENIGK SKTADKKQEKVAVAA
Sbjct: 241 KLRIIDIQGIDKPENIGKASKTADKKQEKVAVAA 274

[Close]

BLAST of Carg05324 vs. NCBI nr
Match: XP_023003105.1 (50S ribosomal protein L21, mitochondrial-like [Cucurbita maxima] >XP_023003106.1 50S ribosomal protein L21, mitochondrial-like [Cucurbita maxima] >XP_023003107.1 50S ribosomal protein L21, mitochondrial-like [Cucurbita maxima] >XP_023003108.1 50S ribosomal protein L21, mitochondrial-like [Cucurbita maxima])

HSP 1 Score: 494.6 bits (1272), Expect = 5.5e-136
Identity = 261/269 (97.03%), Postives = 262/269 (97.40%), Query Frame = 0


Query: 1   MANRRCVQVLTRHASAIFSGKPYIHSLKITSSFLYHNYHTRASTSTYLCTKTDPLCKCWS 60
           MANRRCVQVLTRHASAIF+GKPYIHSLKITSSFLY NYHTRASTSTYL TKTD LCKCWS
Sbjct: 1   MANRRCVQVLTRHASAIFTGKPYIHSLKITSSFLYQNYHTRASTSTYLFTKTDTLCKCWS 60

Query: 61  HSQYLSSDSRNGNDDDDTEEDEDEDEEAYDSSEDDGISGLSRGMQKEYTKEEKEAEAADI 120
           HSQYLSSDSRNGNDDDDTE  EDEDEEAYDSSEDD ISGLSRGMQKEYTKEEKEAEAADI
Sbjct: 61  HSQYLSSDSRNGNDDDDTE--EDEDEEAYDSSEDDVISGLSRGMQKEYTKEEKEAEAADI 120

Query: 121 GYKVVGPLDRSDGVFKGYEPVFAVVQIGSHQFKVSNGDSIFTERLKFCDVNDKLILNRVL 180
           GYKVVGPLDRSDGVFKGYEPVFAVVQIGSHQFKVSNGDSIFTERLKFCDVNDKL LNRVL
Sbjct: 121 GYKVVGPLDRSDGVFKGYEPVFAVVQIGSHQFKVSNGDSIFTERLKFCDVNDKLTLNRVL 180

Query: 181 MLGSSSQTIVGRPTIPSAVVQAVVEEHALDAKVIIFKKKRRKNYRRTKGHRQELTKLRII 240
           MLGSSSQTIVGRPTIPSAVVQAVVEEHALDAKVIIFKKKRRKNYRRTKGHRQELTKLRII
Sbjct: 181 MLGSSSQTIVGRPTIPSAVVQAVVEEHALDAKVIIFKKKRRKNYRRTKGHRQELTKLRII 240

Query: 241 DIQGIDKPENIGKPSKTADKKQEKVAVAA 270
           DIQGIDKPENIGKPSKTADKKQEKVAVAA
Sbjct: 241 DIQGIDKPENIGKPSKTADKKQEKVAVAA 267

[Close]

BLAST of Carg05324 vs. NCBI nr
Match: XP_038886741.1 (50S ribosomal protein L21, mitochondrial [Benincasa hispida])

HSP 1 Score: 427.6 bits (1098), Expect = 8.2e-116
Identity = 232/271 (85.61%), Postives = 244/271 (90.04%), Query Frame = 0


Query: 1   MANRRCVQVLTRHASAIFSGKPYIHSLKITSSFLYHNYHTRASTSTYLCTKTDP-LCKCW 60
           MANRRC+QVLTRHAS IF  KPYIH LKI  SFL  N+HT AS S YL TK DP LC   
Sbjct: 1   MANRRCLQVLTRHASTIFFTKPYIHPLKIAPSFLSQNFHTHASISNYLSTKIDPSLCTYG 60

Query: 61  SHSQYLSSDSRNGNDDDDTE-EDEDEDEEAYDSSEDDGISGLSRGMQKEYTKEEKEAEAA 120
           SH++YLSSDSRNGN+DD TE EDEDED+EAYDSSEDDGIS  SRGMQKEYTKEEKEAEAA
Sbjct: 61  SHTRYLSSDSRNGNEDDFTEDEDEDEDDEAYDSSEDDGISVSSRGMQKEYTKEEKEAEAA 120

Query: 121 DIGYKVVGPLDRSDGVFKGYEPVFAVVQIGSHQFKVSNGDSIFTERLKFCDVNDKLILNR 180
            IGY VVGPLD+S GVFK YEPVFAVVQIGSHQFKVSNGDSIFTERLKFCDVNDKLILN+
Sbjct: 121 AIGYTVVGPLDQSKGVFKPYEPVFAVVQIGSHQFKVSNGDSIFTERLKFCDVNDKLILNK 180

Query: 181 VLMLGSSSQTIVGRPTIPSAVVQAVVEEHALDAKVIIFKKKRRKNYRRTKGHRQELTKLR 240
           VL+LGSSSQTIVGRPT+PSAVVQAVVEEHALDAKVIIFKKKRRKNYRRTKGHRQELTKLR
Sbjct: 181 VLLLGSSSQTIVGRPTVPSAVVQAVVEEHALDAKVIIFKKKRRKNYRRTKGHRQELTKLR 240

Query: 241 IIDIQGIDKPENIGKPSKTADKKQEKVAVAA 270
           IIDIQG+DKPENIGKPSK A KKQE+VAVAA
Sbjct: 241 IIDIQGVDKPENIGKPSKVAGKKQEQVAVAA 271

[Close]

BLAST of Carg05324 vs. ExPASy Swiss-Prot
Match: Q8L9A0 (50S ribosomal protein L21, mitochondrial OS=Arabidopsis thaliana OX=3702 GN=RPL21M PE=1 SV=1)

HSP 1 Score: 244.6 bits (623), Expect = 1.3e-63
Identity = 150/278 (53.96%), Postives = 193/278 (69.42%), Query Frame = 0


Query: 1   MANRRCVQVLTRHASAIFSGKPYIHSLKITSSFLYHNYH-TRASTSTYL----CTKTDPL 60
           MA+ RC + L+R A+ +FS    I+  +  SSF    +  T  S  T +     T+  P 
Sbjct: 1   MASLRCFRELSRRATTVFS----INQTRSISSFHGIEFSGTSISHGTVIPNRSLTRNLPW 60

Query: 61  CKCWSHSQ--YLSSDSRNGNDDDDTEEDEDEDEEAYDSSEDDGISGLSRGMQKEYTKEEK 120
              W  SQ    SS++++ ++D+++ E ED+DEE  +  ED         +++EY+  EK
Sbjct: 61  YSHWYRSQDRCFSSNTKDTDEDEESSEGEDDDEEEGEDFEDSA----DMEVEREYSPAEK 120

Query: 121 EAEAADIGYKVVGPLDRSDGVFKGYEPVFAVVQIGSHQFKVSNGDSIFTERLKFCDVNDK 180
             EA +IGYKV+GPL  S+ +FK YEPVFA+VQIGSHQFKVSNGDSIFTE+LKFCD+NDK
Sbjct: 121 VEEAEEIGYKVMGPLKPSERLFKPYEPVFAIVQIGSHQFKVSNGDSIFTEKLKFCDINDK 180

Query: 181 LILNRVLMLGSSSQTIVGRPTIPSAVVQAVVEEHALDAKVIIFKKKRRKNYRRTKGHRQE 240
           L L +VL+LGS+SQTI+GRP +P A V AVVEEHALD KV+IFKKKRRKNYRRT+GHRQE
Sbjct: 181 LELTKVLLLGSASQTIIGRPILPDATVHAVVEEHALDEKVLIFKKKRRKNYRRTRGHRQE 240

Query: 241 LTKLRIIDIQGIDKPEN--IGKPSKTADKKQEKVAVAA 270
           LTKLRI DIQGI+KPE   + KPSK A  +Q K  + A
Sbjct: 241 LTKLRITDIQGIEKPEPKIVHKPSKEAVTEQTKAELVA 270

[Close]

BLAST of Carg05324 vs. ExPASy Swiss-Prot
Match: P24613 (50S ribosomal protein L21, chloroplastic OS=Spinacia oleracea OX=3562 GN=RPL21 PE=1 SV=1)

HSP 1 Score: 112.1 bits (279), Expect = 1.0e-23
Identity = 62/131 (47.33%), Postives = 87/131 (66.41%), Query Frame = 0


Query: 139 EPVFAVVQIGSHQFKVSNGDSIFTERLKFCDVNDKLILNRVLMLGSSSQTIVGRPTIPSA 198
           E +FAVV IGS Q+ V  G  I+T+RLK   VNDK++LN+VL++G+ + T +G P + +A
Sbjct: 121 EEIFAVVVIGSRQYIVIPGRWIYTQRLKGATVNDKIVLNKVLLVGTKASTYIGTPIVTNA 180

Query: 199 VVQAVVEEHALDAKVIIFKKKRRKNYRRTKGHRQELTKLRIIDIQGI-DKPENIGKPSKT 258
            V AVVEE  LD KVI+FK K++KNYRR  GHRQ +T+++I  I G  D P +  +    
Sbjct: 181 AVHAVVEEQLLDDKVIVFKYKKKKNYRRNIGHRQPITRIKITGITGYEDYPASTLEAEVE 240

Query: 259 ADKKQEKVAVA 269
           A ++ E  A A
Sbjct: 241 AKEEAEAEAEA 251

[Close]

BLAST of Carg05324 vs. ExPASy Swiss-Prot
Match: P51412 (50S ribosomal protein L21, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=RPL21 PE=2 SV=1)

HSP 1 Score: 105.5 bits (262), Expect = 9.4e-22
Identity = 54/136 (39.71%), Postives = 84/136 (61.76%), Query Frame = 0


Query: 112 EKEAEAADIGYKVVGPLDRSDGVFKGYEPVFAVVQIGSHQFKVSNGDSIFTERLKFCDVN 171
           E E E  DI   VV  +          E +FAV+ +G  Q+ V  G  ++T+RLK  +V+
Sbjct: 71  EAEPETTDIEAVVVSDVSEVTEEKAKREEIFAVIMVGGRQYIVFPGRYLYTQRLKDANVD 130

Query: 172 DKLILNRVLMLGSSSQTIVGRPTIPSAVVQAVVEEHALDAKVIIFKKKRRKNYRRTKGHR 231
           D+++LN+VL++G+ + T +G+P + +A V AVVE   L+ KV++FK K +K YRR  GHR
Sbjct: 131 DQIVLNKVLLVGTKTHTYIGKPVVTNATVHAVVESQGLNDKVVVFKYKPKKKYRRNIGHR 190

Query: 232 QELTKLRIIDIQGIDK 248
           Q  T++RI  I G ++
Sbjct: 191 QPNTRIRITGITGYEE 206

[Close]

BLAST of Carg05324 vs. ExPASy Swiss-Prot
Match: A8GYB4 (50S ribosomal protein L21 OS=Rickettsia bellii (strain OSU 85-389) OX=391896 GN=rplU PE=3 SV=1)

HSP 1 Score: 90.9 bits (224), Expect = 2.4e-17
Identity = 48/103 (46.60%), Postives = 69/103 (66.99%), Query Frame = 0


Query: 141 VFAVVQIGSHQFKVSNGDSIFTERLKFCDVNDKLILNRVLMLGS-SSQTIVGRPTIPSAV 200
           +FAV++ G  Q+KV     I  E+++  ++  K+ LN+VLM+G  S  + +G P +  AV
Sbjct: 1   MFAVIKAGGKQYKVDQNSVIKVEKIE-GELGSKIQLNQVLMMGEYSKPSFIGTPLVKGAV 60

Query: 201 VQAVVEEHALDAKVIIFKKKRRKNYRRTKGHRQELTKLRIIDI 243
           V A +     D K+I+FKKKRRKNYRR  GHRQELT+L+I+DI
Sbjct: 61  VTAEITNQLRDNKIIVFKKKRRKNYRRKAGHRQELTELKILDI 102

[Close]

BLAST of Carg05324 vs. ExPASy Swiss-Prot
Match: Q1RGM7 (50S ribosomal protein L21 OS=Rickettsia bellii (strain RML369-C) OX=336407 GN=rplU PE=3 SV=1)

HSP 1 Score: 90.9 bits (224), Expect = 2.4e-17
Identity = 48/103 (46.60%), Postives = 69/103 (66.99%), Query Frame = 0


Query: 141 VFAVVQIGSHQFKVSNGDSIFTERLKFCDVNDKLILNRVLMLGS-SSQTIVGRPTIPSAV 200
           +FAV++ G  Q+KV     I  E+++  ++  K+ LN+VLM+G  S  + +G P +  AV
Sbjct: 1   MFAVIKAGGKQYKVDQNSVIKVEKIE-GELGSKIQLNQVLMMGEYSKPSFIGTPLVKGAV 60

Query: 201 VQAVVEEHALDAKVIIFKKKRRKNYRRTKGHRQELTKLRIIDI 243
           V A +     D K+I+FKKKRRKNYRR  GHRQELT+L+I+DI
Sbjct: 61  VTAEITNQLRDNKIIVFKKKRRKNYRRKAGHRQELTELKILDI 102

[Close]

BLAST of Carg05324 vs. ExPASy TrEMBL
Match: A0A6J1HFL5 (50S ribosomal protein L21, mitochondrial-like OS=Cucurbita moschata OX=3662 GN=LOC111463511 PE=3 SV=1)

HSP 1 Score: 506.1 bits (1302), Expect = 8.8e-140
Identity = 265/273 (97.07%), Postives = 266/273 (97.44%), Query Frame = 0


Query: 1   MANRRCVQVLTRHASAIFSGKPYIHSLKITSSFLYHNYHTRASTSTYLCTKTDPLCKCWS 60
           MANRRCVQVLTRHASAIFSGKPYIHSLKITSSFLY NYHTRASTSTYLCTKTDPLCKCW 
Sbjct: 1   MANRRCVQVLTRHASAIFSGKPYIHSLKITSSFLYQNYHTRASTSTYLCTKTDPLCKCWP 60

Query: 61  HSQYLSSDSRNGNDDDDTE----EDEDEDEEAYDSSEDDGISGLSRGMQKEYTKEEKEAE 120
           HSQYLSSDSRNGNDDDDTE    EDEDEDEEAYDSSEDDGISGLSRGMQKEYTKEEKEAE
Sbjct: 61  HSQYLSSDSRNGNDDDDTEEDEDEDEDEDEEAYDSSEDDGISGLSRGMQKEYTKEEKEAE 120

Query: 121 AADIGYKVVGPLDRSDGVFKGYEPVFAVVQIGSHQFKVSNGDSIFTERLKFCDVNDKLIL 180
           AADIGYKVVGPLDRSDGVFKGYEPVFAVVQIGSHQFKVSNGDSIFTERLKFCDVNDKLIL
Sbjct: 121 AADIGYKVVGPLDRSDGVFKGYEPVFAVVQIGSHQFKVSNGDSIFTERLKFCDVNDKLIL 180

Query: 181 NRVLMLGSSSQTIVGRPTIPSAVVQAVVEEHALDAKVIIFKKKRRKNYRRTKGHRQELTK 240
           NRVLMLGSSSQTIVGRPTIPSAVVQAVVEEHALDAK+IIFKKKRRKNYRRTKGHRQELTK
Sbjct: 181 NRVLMLGSSSQTIVGRPTIPSAVVQAVVEEHALDAKIIIFKKKRRKNYRRTKGHRQELTK 240

Query: 241 LRIIDIQGIDKPENIGKPSKTADKKQEKVAVAA 270
           LRIIDIQGIDKPENIGKPSKTADKKQEK AVAA
Sbjct: 241 LRIIDIQGIDKPENIGKPSKTADKKQEKFAVAA 273

[Close]

BLAST of Carg05324 vs. ExPASy TrEMBL
Match: A0A6J1KVI7 (50S ribosomal protein L21, mitochondrial-like OS=Cucurbita maxima OX=3661 GN=LOC111496817 PE=3 SV=1)

HSP 1 Score: 494.6 bits (1272), Expect = 2.6e-136
Identity = 261/269 (97.03%), Postives = 262/269 (97.40%), Query Frame = 0


Query: 1   MANRRCVQVLTRHASAIFSGKPYIHSLKITSSFLYHNYHTRASTSTYLCTKTDPLCKCWS 60
           MANRRCVQVLTRHASAIF+GKPYIHSLKITSSFLY NYHTRASTSTYL TKTD LCKCWS
Sbjct: 1   MANRRCVQVLTRHASAIFTGKPYIHSLKITSSFLYQNYHTRASTSTYLFTKTDTLCKCWS 60

Query: 61  HSQYLSSDSRNGNDDDDTEEDEDEDEEAYDSSEDDGISGLSRGMQKEYTKEEKEAEAADI 120
           HSQYLSSDSRNGNDDDDTE  EDEDEEAYDSSEDD ISGLSRGMQKEYTKEEKEAEAADI
Sbjct: 61  HSQYLSSDSRNGNDDDDTE--EDEDEEAYDSSEDDVISGLSRGMQKEYTKEEKEAEAADI 120

Query: 121 GYKVVGPLDRSDGVFKGYEPVFAVVQIGSHQFKVSNGDSIFTERLKFCDVNDKLILNRVL 180
           GYKVVGPLDRSDGVFKGYEPVFAVVQIGSHQFKVSNGDSIFTERLKFCDVNDKL LNRVL
Sbjct: 121 GYKVVGPLDRSDGVFKGYEPVFAVVQIGSHQFKVSNGDSIFTERLKFCDVNDKLTLNRVL 180

Query: 181 MLGSSSQTIVGRPTIPSAVVQAVVEEHALDAKVIIFKKKRRKNYRRTKGHRQELTKLRII 240
           MLGSSSQTIVGRPTIPSAVVQAVVEEHALDAKVIIFKKKRRKNYRRTKGHRQELTKLRII
Sbjct: 181 MLGSSSQTIVGRPTIPSAVVQAVVEEHALDAKVIIFKKKRRKNYRRTKGHRQELTKLRII 240

Query: 241 DIQGIDKPENIGKPSKTADKKQEKVAVAA 270
           DIQGIDKPENIGKPSKTADKKQEKVAVAA
Sbjct: 241 DIQGIDKPENIGKPSKTADKKQEKVAVAA 267

[Close]

BLAST of Carg05324 vs. ExPASy TrEMBL
Match: A0A6J1BT96 (50S ribosomal protein L21, mitochondrial OS=Momordica charantia OX=3673 GN=LOC111005353 PE=3 SV=1)

HSP 1 Score: 417.2 bits (1071), Expect = 5.4e-113
Identity = 226/269 (84.01%), Postives = 241/269 (89.59%), Query Frame = 0


Query: 1   MANRRCVQVLTRHASAIFSGKPYIHSLKITSSFLYHNYHTRASTSTYLCTKTDP-LCKCW 60
           MANRRC+QVLTRHASAI S KP++HSLKI+ S L  N+ T AS STYL TK DP LC  W
Sbjct: 1   MANRRCLQVLTRHASAIISTKPFVHSLKISPSILSQNFRTHASISTYLFTKLDPSLCFHW 60

Query: 61  SHSQYLSSDSRNGNDDDDTEEDEDEDEEAYDSSEDDGISGLSRGMQKEYTKEEKEAEAAD 120
           SH + LSSDSR+GN+DDDTE  EDEDEEAYDS EDD IS  SRG+QKEY+KEEKEAEAA 
Sbjct: 61  SHPRNLSSDSRDGNEDDDTE--EDEDEEAYDSGEDDDISVSSRGVQKEYSKEEKEAEAAA 120

Query: 121 IGYKVVGPLDRSDGVFKGYEPVFAVVQIGSHQFKVSNGDSIFTERLKFCDVNDKLILNRV 180
           IGYKV+GPLD+SDGVFK YEPVFAVVQIGSHQFKVSNGDSIFTERLKFCDVNDKLILN+V
Sbjct: 121 IGYKVIGPLDQSDGVFKPYEPVFAVVQIGSHQFKVSNGDSIFTERLKFCDVNDKLILNKV 180

Query: 181 LMLGSSSQTIVGRPTIPSAVVQAVVEEHALDAKVIIFKKKRRKNYRRTKGHRQELTKLRI 240
           L+LGSSSQTIVGRPTI  AVVQAV+EEHALDAKVIIFKKKRRKNYRRTKGHRQELTKLRI
Sbjct: 181 LLLGSSSQTIVGRPTISDAVVQAVIEEHALDAKVIIFKKKRRKNYRRTKGHRQELTKLRI 240

Query: 241 IDIQGIDKPENIGKPSKTADKKQEKVAVA 269
           IDIQGIDKPENIGKPSK A KKQEKVAVA
Sbjct: 241 IDIQGIDKPENIGKPSKAAVKKQEKVAVA 267

[Close]

BLAST of Carg05324 vs. ExPASy TrEMBL
Match: A0A5A7T510 (50S ribosomal protein L21 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold119G00170 PE=3 SV=1)

HSP 1 Score: 415.6 bits (1067), Expect = 1.6e-112
Identity = 224/271 (82.66%), Postives = 243/271 (89.67%), Query Frame = 0


Query: 1   MANRRCVQVLTRHASAIFSGKPYIHSLKITSSFLYHNYHTRASTSTYLCTKTDP-LCKCW 60
           MANRRC+QVLTRHASAI S KPYIH+LKI  S L+ N+HT AS S  L  KTDP LC  W
Sbjct: 48  MANRRCLQVLTRHASAILSTKPYIHTLKIAPSLLFENFHTHASLSNCLSAKTDPSLCTYW 107

Query: 61  SHSQYLSSDSRNGNDDDDTE-EDEDEDEEAYDSSEDDGISGLSRGMQKEYTKEEKEAEAA 120
           SH++YLSSDSRNGN+DD TE EDEDED+EAYD SEDDGIS  SR M+KEYTKEE EAEAA
Sbjct: 108 SHTRYLSSDSRNGNEDDFTEDEDEDEDDEAYD-SEDDGISTSSRVMKKEYTKEEMEAEAA 167

Query: 121 DIGYKVVGPLDRSDGVFKGYEPVFAVVQIGSHQFKVSNGDSIFTERLKFCDVNDKLILNR 180
            IGYKV+GPLD+S+GVFK YEP FAVVQIGSHQFKVSNGDSIFTERLKFCDVNDKLILN+
Sbjct: 168 AIGYKVLGPLDQSEGVFKPYEPAFAVVQIGSHQFKVSNGDSIFTERLKFCDVNDKLILNK 227

Query: 181 VLMLGSSSQTIVGRPTIPSAVVQAVVEEHALDAKVIIFKKKRRKNYRRTKGHRQELTKLR 240
           VL++GSSSQTIVGRPT+PSA VQAVVEEHALDAKVIIFKKKRRKNYRRTKGHRQELTKLR
Sbjct: 228 VLLVGSSSQTIVGRPTVPSAFVQAVVEEHALDAKVIIFKKKRRKNYRRTKGHRQELTKLR 287

Query: 241 IIDIQGIDKPENIGKPSKTADKKQEKVAVAA 270
           I+DIQGI+KPENIGKPSK  DKKQE+VAVAA
Sbjct: 288 IVDIQGIEKPENIGKPSKVTDKKQEQVAVAA 317

[Close]

BLAST of Carg05324 vs. ExPASy TrEMBL
Match: A0A1S3CMX4 (50S ribosomal protein L21, mitochondrial OS=Cucumis melo OX=3656 GN=LOC103502620 PE=3 SV=1)

HSP 1 Score: 415.2 bits (1066), Expect = 2.0e-112
Identity = 223/271 (82.29%), Postives = 243/271 (89.67%), Query Frame = 0


Query: 1   MANRRCVQVLTRHASAIFSGKPYIHSLKITSSFLYHNYHTRASTSTYLCTKTDP-LCKCW 60
           MANRRC+QVLTRHASAI S KPYIH+LKI  S L+ N+HT AS S  L  KTDP LC  W
Sbjct: 10  MANRRCLQVLTRHASAILSTKPYIHTLKIAPSLLFENFHTHASLSNCLSAKTDPSLCTYW 69

Query: 61  SHSQYLSSDSRNGNDDDDTE-EDEDEDEEAYDSSEDDGISGLSRGMQKEYTKEEKEAEAA 120
           SH++YLSSDSRNGN+DD TE EDEDED+EAYD SEDDGIS  SR M+KEYTKEE EAEAA
Sbjct: 70  SHTRYLSSDSRNGNEDDFTEDEDEDEDDEAYD-SEDDGISTSSRVMKKEYTKEEMEAEAA 129

Query: 121 DIGYKVVGPLDRSDGVFKGYEPVFAVVQIGSHQFKVSNGDSIFTERLKFCDVNDKLILNR 180
            IGYKV+GPLD+S+G+FK YEP FAVVQIGSHQFKVSNGDSIFTERLKFCDVNDKLILN+
Sbjct: 130 AIGYKVLGPLDQSEGIFKPYEPAFAVVQIGSHQFKVSNGDSIFTERLKFCDVNDKLILNK 189

Query: 181 VLMLGSSSQTIVGRPTIPSAVVQAVVEEHALDAKVIIFKKKRRKNYRRTKGHRQELTKLR 240
           VL++GSSSQTIVGRPT+PSA VQAVVEEHALDAKVIIFKKKRRKNYRRTKGHRQELTKLR
Sbjct: 190 VLLVGSSSQTIVGRPTVPSAFVQAVVEEHALDAKVIIFKKKRRKNYRRTKGHRQELTKLR 249

Query: 241 IIDIQGIDKPENIGKPSKTADKKQEKVAVAA 270
           I+DIQGI+KPENIGKPSK  DKKQE+VAVAA
Sbjct: 250 IVDIQGIEKPENIGKPSKVTDKKQEQVAVAA 279

[Close]

BLAST of Carg05324 vs. TAIR 10
Match: AT4G30930.1 (Ribosomal protein L21 )

HSP 1 Score: 244.6 bits (623), Expect = 9.2e-65
Identity = 150/278 (53.96%), Postives = 193/278 (69.42%), Query Frame = 0


Query: 1   MANRRCVQVLTRHASAIFSGKPYIHSLKITSSFLYHNYH-TRASTSTYL----CTKTDPL 60
           MA+ RC + L+R A+ +FS    I+  +  SSF    +  T  S  T +     T+  P 
Sbjct: 1   MASLRCFRELSRRATTVFS----INQTRSISSFHGIEFSGTSISHGTVIPNRSLTRNLPW 60

Query: 61  CKCWSHSQ--YLSSDSRNGNDDDDTEEDEDEDEEAYDSSEDDGISGLSRGMQKEYTKEEK 120
              W  SQ    SS++++ ++D+++ E ED+DEE  +  ED         +++EY+  EK
Sbjct: 61  YSHWYRSQDRCFSSNTKDTDEDEESSEGEDDDEEEGEDFEDSA----DMEVEREYSPAEK 120

Query: 121 EAEAADIGYKVVGPLDRSDGVFKGYEPVFAVVQIGSHQFKVSNGDSIFTERLKFCDVNDK 180
             EA +IGYKV+GPL  S+ +FK YEPVFA+VQIGSHQFKVSNGDSIFTE+LKFCD+NDK
Sbjct: 121 VEEAEEIGYKVMGPLKPSERLFKPYEPVFAIVQIGSHQFKVSNGDSIFTEKLKFCDINDK 180

Query: 181 LILNRVLMLGSSSQTIVGRPTIPSAVVQAVVEEHALDAKVIIFKKKRRKNYRRTKGHRQE 240
           L L +VL+LGS+SQTI+GRP +P A V AVVEEHALD KV+IFKKKRRKNYRRT+GHRQE
Sbjct: 181 LELTKVLLLGSASQTIIGRPILPDATVHAVVEEHALDEKVLIFKKKRRKNYRRTRGHRQE 240

Query: 241 LTKLRIIDIQGIDKPEN--IGKPSKTADKKQEKVAVAA 270
           LTKLRI DIQGI+KPE   + KPSK A  +Q K  + A
Sbjct: 241 LTKLRITDIQGIEKPEPKIVHKPSKEAVTEQTKAELVA 270

[Close]

BLAST of Carg05324 vs. TAIR 10
Match: AT1G35680.1 (Ribosomal protein L21 )

HSP 1 Score: 105.5 bits (262), Expect = 6.6e-23
Identity = 54/136 (39.71%), Postives = 84/136 (61.76%), Query Frame = 0


Query: 112 EKEAEAADIGYKVVGPLDRSDGVFKGYEPVFAVVQIGSHQFKVSNGDSIFTERLKFCDVN 171
           E E E  DI   VV  +          E +FAV+ +G  Q+ V  G  ++T+RLK  +V+
Sbjct: 71  EAEPETTDIEAVVVSDVSEVTEEKAKREEIFAVIMVGGRQYIVFPGRYLYTQRLKDANVD 130

Query: 172 DKLILNRVLMLGSSSQTIVGRPTIPSAVVQAVVEEHALDAKVIIFKKKRRKNYRRTKGHR 231
           D+++LN+VL++G+ + T +G+P + +A V AVVE   L+ KV++FK K +K YRR  GHR
Sbjct: 131 DQIVLNKVLLVGTKTHTYIGKPVVTNATVHAVVESQGLNDKVVVFKYKPKKKYRRNIGHR 190

Query: 232 QELTKLRIIDIQGIDK 248
           Q  T++RI  I G ++
Sbjct: 191 QPNTRIRITGITGYEE 206

The following BLAST results are available for this feature:

BLAST of Carg05324 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG7027159.1	2.1e-143	100.00	50S ribosomal protein L21, mitochondrial [Cucurbita argyrosperma subsp. argyrosp...	[more]
XP_022963236.1	1.8e-139	97.07	50S ribosomal protein L21, mitochondrial-like [Cucurbita moschata] >XP_022963238...	[more]
XP_023518436.1	3.8e-137	97.08	50S ribosomal protein L21, mitochondrial-like [Cucurbita pepo subsp. pepo] >XP_0...	[more]
XP_023003105.1	5.5e-136	97.03	50S ribosomal protein L21, mitochondrial-like [Cucurbita maxima] >XP_023003106.1...	[more]
XP_038886741.1	8.2e-116	85.61	50S ribosomal protein L21, mitochondrial [Benincasa hispida]	[more]

BLAST of Carg05324 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q8L9A0	1.3e-63	53.96	50S ribosomal protein L21, mitochondrial OS=Arabidopsis thaliana OX=3702 GN=RPL2...	[more]
P24613	1.0e-23	47.33	50S ribosomal protein L21, chloroplastic OS=Spinacia oleracea OX=3562 GN=RPL21 P...	[more]
P51412	9.4e-22	39.71	50S ribosomal protein L21, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=RPL2...	[more]
A8GYB4	2.4e-17	46.60	50S ribosomal protein L21 OS=Rickettsia bellii (strain OSU 85-389) OX=391896 GN=...	[more]
Q1RGM7	2.4e-17	46.60	50S ribosomal protein L21 OS=Rickettsia bellii (strain RML369-C) OX=336407 GN=rp...	[more]

BLAST of Carg05324 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1HFL5	8.8e-140	97.07	50S ribosomal protein L21, mitochondrial-like OS=Cucurbita moschata OX=3662 GN=L...	[more]
A0A6J1KVI7	2.6e-136	97.03	50S ribosomal protein L21, mitochondrial-like OS=Cucurbita maxima OX=3661 GN=LOC...	[more]
A0A6J1BT96	5.4e-113	84.01	50S ribosomal protein L21, mitochondrial OS=Momordica charantia OX=3673 GN=LOC11...	[more]
A0A5A7T510	1.6e-112	82.66	50S ribosomal protein L21 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffo...	[more]
A0A1S3CMX4	2.0e-112	82.29	50S ribosomal protein L21, mitochondrial OS=Cucumis melo OX=3656 GN=LOC103502620...	[more]

BLAST of Carg05324 vs. TAIR 10


Match Name	E-value	Identity	Description
AT4G30930.1	9.2e-65	53.96	Ribosomal protein L21	[more]
AT1G35680.1	6.6e-23	39.71	Ribosomal protein L21	[more]

InterPro

Analysis Name: InterPro Annotations of Silver-seed gourd (SMH-JMG-627) v2
Date Performed: 2021-10-25

Position :

Zoom :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001787	Ribosomal protein L21	TIGRFAM	TIGR00061	TIGR00061	coord: 142..242 e-value: 8.6E-26 score: 88.3
IPR001787	Ribosomal protein L21	HAMAP	MF_01363	Ribosomal_L21	coord: 141..244 score: 21.990366
IPR028909	Ribosomal protein L21-like	PFAM	PF00829	Ribosomal_L21p	coord: 142..242 e-value: 3.1E-31 score: 107.6
IPR028909	Ribosomal protein L21-like	PANTHER	PTHR21349	50S RIBOSOMAL PROTEIN L21	coord: 1..266
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 248..269
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 65..112
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 73..93
None	No IPR available	PANTHER	PTHR21349:SF5	BNAA08G12830D PROTEIN	coord: 1..266
IPR018258	Ribosomal protein L21, conserved site	PROSITE	PS01169	RIBOSOMAL_L21	coord: 213..235
IPR036164	L21-like superfamily	SUPERFAMILY	141091	L21p-like	coord: 142..242

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Carg05324-RA	Carg05324-RA	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006412	translation
cellular_component	GO:0005737	cytoplasm
cellular_component	GO:0005840	ribosome
molecular_function	GO:0003723	RNA binding
molecular_function	GO:0003735	structural constituent of ribosome