Carg05298 (gene) Silver-seed gourd (SMH-JMG-627) v2

Overview
NameCarg05298
Typegene
OrganismCucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
DescriptionUnknown protein
LocationCarg_Chr07: 4066264 .. 4068225 (+)
RNA-Seq ExpressionCarg05298
SyntenyCarg05298
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAAAAAAGTTGAGTTTATTGTAAATGAAACGGGAAATCTTCATGGGAAATTGGGGATTTTGGGATTTTGGGATTTGGGGTTCTTCTTCTGTTGGATGAGCGGCGGGTACGGATCATCGTGAGTGCCACTACCATTTGGAAGCTTCGTGAAAAAGACCCATTTCATCTTATCTTACTGCTCCTTACTCAAATATTTTAGTCTCTATTTCTGGCGCTCTCTCTCTTTAGCCAAATGGACGCGCTACACTCTGCTTGGGTTCTTCTAATATCTTCTCTGTATGAATCAAGAGCCGTGTGAAGTTCATACAGGAAGATGAGAGCGCTGAGGATATGGTGATGCTTCCATCTTCTTATTCTTCTTCTTCTTCTTTACTCTTTCTCTCTGTGTTGCTTTATTTTGTTTGGATCTGTTGTCCCGTGAGTTTCTTCTTATGAATCTGATTCGTATTCGCAATTTCTGATCGAAAAGAAACCGACCCATTTGGAGGACTTGCGGCATTTCTGGAAAGAACTATCTAGTTTTCATTATTGTCTCTGTTTGGTAGAACAGGGTAAGATAGATCGGTTTTGAAGAAATCTGGTACTAATTTGAGGTATGTATCATAGAAATGGGAAATGGGAGAGACCCTTTTCGACCCTTTTCGATTGATGTTTAGATACTATAAGGATGCAAGTCAAATACATGAACCCATAAGAGAAAACCCAGAATCCAGTGTTCTTATAATCTCTGCCAACAAGAGCCCCAAAAGAAACCCAGAAACCAGAATGAGAGTGTGTAGCTTGCCTAGCCCATTGCATCTATTATTTATTATGTGGAATTGAACAAAACATTTAGCTGGTGTAGCCTGCTGCACGAACCCCGATGAGTTTATATCAGAGATGATAAAAGAATGGCAGCTGAGAGATACATATAGAAAGGCGAATTGATTGAGGGGCGTTGTGGAGTTAAAAGAGAAAGAACAAGTCCCGAGTGTTTGGTTTAGGTAAGTTAGGTCGGAGCTTTTCAAATTATGGGGTTTTCTTGTTAGTTAAGAGGATGATTTTGCCATAAACGAGTGTTTTGTGTTTGGTTTAGGGCGATTTGTGGCTGTAGCAGAGGAGGGGGGGCTTTCTCAGACCGCCTGTCTGCTTCTTTTTCACCGTTTCCTCTTTATATTGCTGTGATTTGTCTATTAAATGCTTCTTTTCGAAGCACTCAAAAAGGCTATTATATATTGTTGCTGAGCTGAACCCAACTGTTCTTCTTTTCATCTTTTGATAATTTTTAATCGCTTAAATCTCTCTTTACTCAACTGGGTTTGGGGATTTAGCTTTATTTGAGCGTTTTGTTGCACTTTTCCCATTTGGTTTGGCTGAAATGTGGACGAGTTAGGCCTTTTCCATTGAATTTACTCCACCAAATAAGCATCATTCTGAGAAACCCCACGATCCTTGTTGTGTATAATGCTCGAGCGTCTAATGGGTTTGTTTAACAAGATGTAATTAGAATGAATTTATATCTAATACCCATTTTTATTGGTTGCTCACATAGATTGGTGCGCTTTGCAGATAAGTAGGCGAACACAGAGTGGCTGCAGAAGCACAACAACAGCCACAGGCTCCTGTTTATCGAACCGCGCCGCTCTTGTTTGTCGCTCGTGCGTTTACAATTTCAAACACAGATCTCGAGACCCTTTTCCTCTTAGCTACAACAGCTGACATCTGTTTAGCTTTTGCACCAATTTTTCCGGCCTTCCCCTCCCGTTCTCTCTTATTTATGTAGACCCCGATCTTCCTCCTCCTCCTCCTCCTCCTCCATTGGTTTTGAACTCGATTCAAAGTACTTGGACGAGTTTTTCGTGGCTTTGTTTTATACTTTCCTCAAAGGCGTGGGGTTTGACTCTATGAGAAGAAGCTGTATTAGCCACAATCTCAGCCGGGTCGGTGACATAGTGTTGAATTTTGCTGTTGCTTTACGGTGA

mRNA sequence

ATGAAAAAAGTTGAGTTTATTGTAAATGAAACGGGAAATCTTCATGGGAAATTGGGGATTTTGGGATTTTGGGATTTGGGGTTCTTCTTCTGTTGGATGAGCGGCGGGTACGGATCATCGGCGATTTGTGGCTGTAGCAGAGGAGGGGGGGCTTTCTCAGACCGCCTGTCTGCTTCTTTTTCACCGTTTCCTCTTTATATTGCTATAAGTAGGCGAACACAGAGTGGCTGCAGAAGCACAACAACAGCCACAGGCTCCTGTTTATCGAACCGCGCCGCTCTTGTTTGTCGCTCACCCCGATCTTCCTCCTCCTCCTCCTCCTCCTCCATTGGTTTTGAACTCGATTCAAAGTACTTGGACGAGTTTTTCGTGGCTTTGTTTTATACTTTCCTCAAAGGCGTGGGGTTTGACTCTATGAGAAGAAGCTGTATTAGCCACAATCTCAGCCGGGTCGGTGACATAGTGTTGAATTTTGCTGTTGCTTTACGGTGA

Coding sequence (CDS)

ATGAAAAAAGTTGAGTTTATTGTAAATGAAACGGGAAATCTTCATGGGAAATTGGGGATTTTGGGATTTTGGGATTTGGGGTTCTTCTTCTGTTGGATGAGCGGCGGGTACGGATCATCGGCGATTTGTGGCTGTAGCAGAGGAGGGGGGGCTTTCTCAGACCGCCTGTCTGCTTCTTTTTCACCGTTTCCTCTTTATATTGCTATAAGTAGGCGAACACAGAGTGGCTGCAGAAGCACAACAACAGCCACAGGCTCCTGTTTATCGAACCGCGCCGCTCTTGTTTGTCGCTCACCCCGATCTTCCTCCTCCTCCTCCTCCTCCTCCATTGGTTTTGAACTCGATTCAAAGTACTTGGACGAGTTTTTCGTGGCTTTGTTTTATACTTTCCTCAAAGGCGTGGGGTTTGACTCTATGAGAAGAAGCTGTATTAGCCACAATCTCAGCCGGGTCGGTGACATAGTGTTGAATTTTGCTGTTGCTTTACGGTGA

Protein sequence

MKKVEFIVNETGNLHGKLGILGFWDLGFFFCWMSGGYGSSAICGCSRGGGAFSDRLSASFSPFPLYIAISRRTQSGCRSTTTATGSCLSNRAALVCRSPRSSSSSSSSSIGFELDSKYLDEFFVALFYTFLKGVGFDSMRRSCISHNLSRVGDIVLNFAVALR
Homology
[Close]
BLAST of Carg05298 vs. NCBI nr
Match: KAG7027135.1 (hypothetical protein SDJN02_11146, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 322.4 bits (825), Expect = 2.3e-84
Identity = 163/163 (100.00%), Postives = 163/163 (100.00%), Query Frame = 0 

Query: 1   MKKVEFIVNETGNLHGKLGILGFWDLGFFFCWMSGGYGSSAICGCSRGGGAFSDRLSASF 60
           MKKVEFIVNETGNLHGKLGILGFWDLGFFFCWMSGGYGSSAICGCSRGGGAFSDRLSASF
Sbjct: 1   MKKVEFIVNETGNLHGKLGILGFWDLGFFFCWMSGGYGSSAICGCSRGGGAFSDRLSASF 60

Query: 61  SPFPLYIAISRRTQSGCRSTTTATGSCLSNRAALVCRSPRSSSSSSSSSIGFELDSKYLD 120
           SPFPLYIAISRRTQSGCRSTTTATGSCLSNRAALVCRSPRSSSSSSSSSIGFELDSKYLD
Sbjct: 61  SPFPLYIAISRRTQSGCRSTTTATGSCLSNRAALVCRSPRSSSSSSSSSIGFELDSKYLD 120

Query: 121 EFFVALFYTFLKGVGFDSMRRSCISHNLSRVGDIVLNFAVALR 164
           EFFVALFYTFLKGVGFDSMRRSCISHNLSRVGDIVLNFAVALR
Sbjct: 121 EFFVALFYTFLKGVGFDSMRRSCISHNLSRVGDIVLNFAVALR 163

[Close]
BLAST of Carg05298 vs. NCBI nr
Match: KAG7034433.1 (hypothetical protein SDJN02_04162, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 77.0 bits (188), Expect = 1.6e-10
Identity = 41/49 (83.67%), Postives = 42/49 (85.71%), Query Frame = 0 

Query: 50 GAFSDRLSASFSPFPLYIAISRRTQSGCRSTTTATGSCLSNRAALVCRS 99
          GAFSD LSAS   FPLYIAISRR QSGCRSTTTA G CLS+RAALVCRS
Sbjct: 9  GAFSDTLSASLFAFPLYIAISRRAQSGCRSTTTARGFCLSDRAALVCRS 57

The following BLAST results are available for this feature:
BLAST of Carg05298 vs. NCBI nr
Match NameE-valueIdentityDescription
KAG7027135.12.3e-84100.00hypothetical protein SDJN02_11146, partial [Cucurbita argyrosperma subsp. argyro... [more]
KAG7034433.11.6e-1083.67hypothetical protein SDJN02_04162, partial [Cucurbita argyrosperma subsp. argyro... [more]
BLAST of Carg05298 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of Carg05298 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of Carg05298 vs. NCBI nr
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Carg05298-RACarg05298-RAmRNA