Carg05289 (gene) Silver-seed gourd (SMH-JMG-627) v2

Overview


Name	Carg05289
Type	gene
Organism	Cucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
Description	TFIIS N-terminal domain-containing protein
Location	Carg_Chr07: 3998196 .. 4000142 (+)
RNA-Seq Expression	Carg05289
Synteny	Carg05289

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGTTCGATTGGATTTGGATGATTTCCGGACCATACTTGATACAGCCGGCGTCGATGTTTGGACCTTCATCGATACAGCTATGGAGGTCGCTTCAATGGATTACGGCAATCAATTGAAAAATCGAAGAGATGGAATCGTCGAGAGGCTCTATACGTTGACCTCGCATCCGTCGCGATGTCGGAACTGCGATACGGATCGCCACCCCGACGGCCGCTCTAATGGCTGTGAAATCAAACAGAGCTCCGCCGAGGCGAAGGATGGTTCCCCTTCGACGCCGCAGTTCGTCGGAGTTGAAGGGGACGACGATAGAGTAGACCCATATGGCGGTTCGTTTGATGATGAACAGAAGACGGTTTTAGAAATTAAGGAGCAGCTCGAAATTCCTCACCAGGTCTTCTTCCTCTCTGATTGTTTGGCCTTTGGGGATTCTTTTCTGAACTTACCAATTTGGTGATTGTTTGTCTTGTTTAAGCCTGAAGATGCTTTGGTTGATCTGCTTCAAAACTTGGCAGACATGGATATCACATTCCAAGCTCTTAAGGTTTCTGTTGCTGTAATTCTTTTGAATTTGTGGGTTCTGTTGCTTTCTTCTTCTCTGTTTCTTACCTGTTCTTGTTCTTGTTCTTGTTTTTGTATAGGAAACTGATATTGGAAGGCATGTGAATCGGTTAAGGAAGCATTCATCTAATGATGTTCGTAGATTGGTGAAACATCTTGTCAGGTTCATAACAATTTATATATGAATTCATGACCGATGCTTGGTGAATTTCTGCTCATTTGTGTGTTTTTCATAGGAAATGGAAGGATATTGTGGATGAATGGGTCAGGTTGAATCAGCCAGGGGAGCAGCCAGCTTCATTAATAGGTATCAAATAAGAACATCATGCTTAACTTCATGATTCAATTCCTTCCGACATGATTTAGAACTCAAAAATTTAGCTAAGAAAGGTTTCTACTGCCATTCACAGCTGATGGCGACTCACCTCAACAAAAACTTCCTCAAAATGGTTACCATCTGGTGAATTGAAATCATTGATCTTATGATTCTAATGTTTGTGTTCTTTGTAGAAAAAGCTTGAAATCTTTCTTCTTTTTTATAGGTTCCTGATTTCGCATACTCTCCGAATCCTCACAGTGAGTATCAAATTCGAATCATACGCGAACTTCTTGTTTCATTTGCCATCGTTTACTTACTATGGATTTCATTGTGTTCTTAGATGGAAGTTCTGGGTCGGATCGAAATAACTCAGAGCCAGAACCGAAAGGAAAGCCTATGCCAAGACGAGACGCTCCGCCTAAACCAGCACAACCAGCTTCAACGTCGTCTTTAACTCCTCAAAACGTATGGTAACCAAATTAGAGTCGTTTAACTCTACGTTTGGTTGCCAAAAATGGAGGATGAAAATTGAACTTTCGAATCTTATGCTTCCGAAAACATAACAAACTTAACTCAAACTGCATCAATTGTGTTGAAATTTGACAAATTTGAGTGGTATGTCTGAATTTTCTCGGGTCCTAGATGATATGATATGATATGATATGATATGCACGGTCTTACTTACATTACAGTCTGCCAGTTCTTATTTTCATTAAGAAGGTGTTCTTATTATATGTTATTTGCAGAAACATAAAGAACAACAGAAGGAAGCAAATTTTGATTCACAAAAGCTTGCTTCAGCTAGAAAAAGGCTTCAAGAGAATTACAAAGAAGCTGAAAATGGTTTGGCTACACCTTTCTTTTTCTTCCCTTTTACTTCATTTTCTGATTCCTTAGGAACAAATCAATACTAATTACTGTTTGTCTGTTGCTCTTATTGAAGCTAAGAGGCAAAGAACAATCCAAGTCATGGACATCCATGACTTACCAAAGCCAAAGAATACCTTCTTCTCAAAGAATAAAGGCGGCGGCGGTGGCGGCGGCGGCTCTCAAGGCAGGCACTGGTGA

mRNA sequence

ATGGTTCGATTGGATTTGGATGATTTCCGGACCATACTTGATACAGCCGGCGTCGATGTTTGGACCTTCATCGATACAGCTATGGAGGTCGCTTCAATGGATTACGGCAATCAATTGAAAAATCGAAGAGATGGAATCGTCGAGAGGCTCTATACGTTGACCTCGCATCCGTCGCGATGTCGGAACTGCGATACGGATCGCCACCCCGACGGCCGCTCTAATGGCTGTGAAATCAAACAGAGCTCCGCCGAGGCGAAGGATGGTTCCCCTTCGACGCCGCAGTTCGTCGGAGTTGAAGGGGACGACGATAGAGTAGACCCATATGGCGGTTCGTTTGATGATGAACAGAAGACGGTTTTAGAAATTAAGGAGCAGCTCGAAATTCCTCACCAGCCTGAAGATGCTTTGGTTGATCTGCTTCAAAACTTGGCAGACATGGATATCACATTCCAAGCTCTTAAGGAAACTGATATTGGAAGGCATGTGAATCGGTTAAGGAAGCATTCATCTAATGATGTTCGTAGATTGGTGAAACATCTTGTCAGGAAATGGAAGGATATTGTGGATGAATGGGTCAGGTTGAATCAGCCAGGGGAGCAGCCAGCTTCATTAATAGCTGATGGCGACTCACCTCAACAAAAACTTCCTCAAAATGGTTACCATCTGGTTCCTGATTTCGCATACTCTCCGAATCCTCACAATGGAAGTTCTGGGTCGGATCGAAATAACTCAGAGCCAGAACCGAAAGGAAAGCCTATGCCAAGACGAGACGCTCCGCCTAAACCAGCACAACCAGCTTCAACGTCGTCTTTAACTCCTCAAAACAAACATAAAGAACAACAGAAGGAAGCAAATTTTGATTCACAAAAGCTTGCTTCAGCTAGAAAAAGGCTTCAAGAGAATTACAAAGAAGCTGAAAATGCTAAGAGGCAAAGAACAATCCAAGTCATGGACATCCATGACTTACCAAAGCCAAAGAATACCTTCTTCTCAAAGAATAAAGGCGGCGGCGGTGGCGGCGGCGGCTCTCAAGGCAGGCACTGGTGA

Coding sequence (CDS)

ATGGTTCGATTGGATTTGGATGATTTCCGGACCATACTTGATACAGCCGGCGTCGATGTTTGGACCTTCATCGATACAGCTATGGAGGTCGCTTCAATGGATTACGGCAATCAATTGAAAAATCGAAGAGATGGAATCGTCGAGAGGCTCTATACGTTGACCTCGCATCCGTCGCGATGTCGGAACTGCGATACGGATCGCCACCCCGACGGCCGCTCTAATGGCTGTGAAATCAAACAGAGCTCCGCCGAGGCGAAGGATGGTTCCCCTTCGACGCCGCAGTTCGTCGGAGTTGAAGGGGACGACGATAGAGTAGACCCATATGGCGGTTCGTTTGATGATGAACAGAAGACGGTTTTAGAAATTAAGGAGCAGCTCGAAATTCCTCACCAGCCTGAAGATGCTTTGGTTGATCTGCTTCAAAACTTGGCAGACATGGATATCACATTCCAAGCTCTTAAGGAAACTGATATTGGAAGGCATGTGAATCGGTTAAGGAAGCATTCATCTAATGATGTTCGTAGATTGGTGAAACATCTTGTCAGGAAATGGAAGGATATTGTGGATGAATGGGTCAGGTTGAATCAGCCAGGGGAGCAGCCAGCTTCATTAATAGCTGATGGCGACTCACCTCAACAAAAACTTCCTCAAAATGGTTACCATCTGGTTCCTGATTTCGCATACTCTCCGAATCCTCACAATGGAAGTTCTGGGTCGGATCGAAATAACTCAGAGCCAGAACCGAAAGGAAAGCCTATGCCAAGACGAGACGCTCCGCCTAAACCAGCACAACCAGCTTCAACGTCGTCTTTAACTCCTCAAAACAAACATAAAGAACAACAGAAGGAAGCAAATTTTGATTCACAAAAGCTTGCTTCAGCTAGAAAAAGGCTTCAAGAGAATTACAAAGAAGCTGAAAATGCTAAGAGGCAAAGAACAATCCAAGTCATGGACATCCATGACTTACCAAAGCCAAAGAATACCTTCTTCTCAAAGAATAAAGGCGGCGGCGGTGGCGGCGGCGGCTCTCAAGGCAGGCACTGGTGA

Protein sequence

MVRLDLDDFRTILDTAGVDVWTFIDTAMEVASMDYGNQLKNRRDGIVERLYTLTSHPSRCRNCDTDRHPDGRSNGCEIKQSSAEAKDGSPSTPQFVGVEGDDDRVDPYGGSFDDEQKTVLEIKEQLEIPHQPEDALVDLLQNLADMDITFQALKETDIGRHVNRLRKHSSNDVRRLVKHLVRKWKDIVDEWVRLNQPGEQPASLIADGDSPQQKLPQNGYHLVPDFAYSPNPHNGSSGSDRNNSEPEPKGKPMPRRDAPPKPAQPASTSSLTPQNKHKEQQKEANFDSQKLASARKRLQENYKEAENAKRQRTIQVMDIHDLPKPKNTFFSKNKGGGGGGGGSQGRHW

Homology

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BLAST of Carg05289 vs. NCBI nr
Match: KAG7027126.1 (putative mediator of RNA polymerase II transcription subunit 26c, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 691.8 bits (1784), Expect = 3.0e-195
Identity = 348/348 (100.00%), Postives = 348/348 (100.00%), Query Frame = 0


Query: 1   MVRLDLDDFRTILDTAGVDVWTFIDTAMEVASMDYGNQLKNRRDGIVERLYTLTSHPSRC 60
           MVRLDLDDFRTILDTAGVDVWTFIDTAMEVASMDYGNQLKNRRDGIVERLYTLTSHPSRC
Sbjct: 1   MVRLDLDDFRTILDTAGVDVWTFIDTAMEVASMDYGNQLKNRRDGIVERLYTLTSHPSRC 60

Query: 61  RNCDTDRHPDGRSNGCEIKQSSAEAKDGSPSTPQFVGVEGDDDRVDPYGGSFDDEQKTVL 120
           RNCDTDRHPDGRSNGCEIKQSSAEAKDGSPSTPQFVGVEGDDDRVDPYGGSFDDEQKTVL
Sbjct: 61  RNCDTDRHPDGRSNGCEIKQSSAEAKDGSPSTPQFVGVEGDDDRVDPYGGSFDDEQKTVL 120

Query: 121 EIKEQLEIPHQPEDALVDLLQNLADMDITFQALKETDIGRHVNRLRKHSSNDVRRLVKHL 180
           EIKEQLEIPHQPEDALVDLLQNLADMDITFQALKETDIGRHVNRLRKHSSNDVRRLVKHL
Sbjct: 121 EIKEQLEIPHQPEDALVDLLQNLADMDITFQALKETDIGRHVNRLRKHSSNDVRRLVKHL 180

Query: 181 VRKWKDIVDEWVRLNQPGEQPASLIADGDSPQQKLPQNGYHLVPDFAYSPNPHNGSSGSD 240
           VRKWKDIVDEWVRLNQPGEQPASLIADGDSPQQKLPQNGYHLVPDFAYSPNPHNGSSGSD
Sbjct: 181 VRKWKDIVDEWVRLNQPGEQPASLIADGDSPQQKLPQNGYHLVPDFAYSPNPHNGSSGSD 240

Query: 241 RNNSEPEPKGKPMPRRDAPPKPAQPASTSSLTPQNKHKEQQKEANFDSQKLASARKRLQE 300
           RNNSEPEPKGKPMPRRDAPPKPAQPASTSSLTPQNKHKEQQKEANFDSQKLASARKRLQE
Sbjct: 241 RNNSEPEPKGKPMPRRDAPPKPAQPASTSSLTPQNKHKEQQKEANFDSQKLASARKRLQE 300

Query: 301 NYKEAENAKRQRTIQVMDIHDLPKPKNTFFSKNKGGGGGGGGSQGRHW 349
           NYKEAENAKRQRTIQVMDIHDLPKPKNTFFSKNKGGGGGGGGSQGRHW
Sbjct: 301 NYKEAENAKRQRTIQVMDIHDLPKPKNTFFSKNKGGGGGGGGSQGRHW 348

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BLAST of Carg05289 vs. NCBI nr
Match: KAG6595110.1 (putative mediator of RNA polymerase II transcription subunit 26c, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 689.5 bits (1778), Expect = 1.5e-194
Identity = 347/348 (99.71%), Postives = 347/348 (99.71%), Query Frame = 0


Query: 1   MVRLDLDDFRTILDTAGVDVWTFIDTAMEVASMDYGNQLKNRRDGIVERLYTLTSHPSRC 60
           MVRLDLDDFRTILDTAGVDVWTFIDTAMEVASMDYGNQLKNRRDGIVERLYTLTSHPSRC
Sbjct: 1   MVRLDLDDFRTILDTAGVDVWTFIDTAMEVASMDYGNQLKNRRDGIVERLYTLTSHPSRC 60

Query: 61  RNCDTDRHPDGRSNGCEIKQSSAEAKDGSPSTPQFVGVEGDDDRVDPYGGSFDDEQKTVL 120
           RNCDTDRHPDGRSNGCEIKQSSAEAKDGSPSTPQFVGVEGDDDRVDPYGGSFDDEQK VL
Sbjct: 61  RNCDTDRHPDGRSNGCEIKQSSAEAKDGSPSTPQFVGVEGDDDRVDPYGGSFDDEQKKVL 120

Query: 121 EIKEQLEIPHQPEDALVDLLQNLADMDITFQALKETDIGRHVNRLRKHSSNDVRRLVKHL 180
           EIKEQLEIPHQPEDALVDLLQNLADMDITFQALKETDIGRHVNRLRKHSSNDVRRLVKHL
Sbjct: 121 EIKEQLEIPHQPEDALVDLLQNLADMDITFQALKETDIGRHVNRLRKHSSNDVRRLVKHL 180

Query: 181 VRKWKDIVDEWVRLNQPGEQPASLIADGDSPQQKLPQNGYHLVPDFAYSPNPHNGSSGSD 240
           VRKWKDIVDEWVRLNQPGEQPASLIADGDSPQQKLPQNGYHLVPDFAYSPNPHNGSSGSD
Sbjct: 181 VRKWKDIVDEWVRLNQPGEQPASLIADGDSPQQKLPQNGYHLVPDFAYSPNPHNGSSGSD 240

Query: 241 RNNSEPEPKGKPMPRRDAPPKPAQPASTSSLTPQNKHKEQQKEANFDSQKLASARKRLQE 300
           RNNSEPEPKGKPMPRRDAPPKPAQPASTSSLTPQNKHKEQQKEANFDSQKLASARKRLQE
Sbjct: 241 RNNSEPEPKGKPMPRRDAPPKPAQPASTSSLTPQNKHKEQQKEANFDSQKLASARKRLQE 300

Query: 301 NYKEAENAKRQRTIQVMDIHDLPKPKNTFFSKNKGGGGGGGGSQGRHW 349
           NYKEAENAKRQRTIQVMDIHDLPKPKNTFFSKNKGGGGGGGGSQGRHW
Sbjct: 301 NYKEAENAKRQRTIQVMDIHDLPKPKNTFFSKNKGGGGGGGGSQGRHW 348

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BLAST of Carg05289 vs. NCBI nr
Match: XP_022962950.1 (probable mediator of RNA polymerase II transcription subunit 26c [Cucurbita moschata] >XP_022962951.1 probable mediator of RNA polymerase II transcription subunit 26c [Cucurbita moschata])

HSP 1 Score: 676.4 bits (1744), Expect = 1.3e-190
Identity = 342/348 (98.28%), Postives = 343/348 (98.56%), Query Frame = 0


Query: 1   MVRLDLDDFRTILDTAGVDVWTFIDTAMEVASMDYGNQLKNRRDGIVERLYTLTSHPSRC 60
           MVRLDLDDFRTILDTAGVDVWTFIDTAMEVASMDYGNQLKNRRDGIVERLYTLTSHPSRC
Sbjct: 1   MVRLDLDDFRTILDTAGVDVWTFIDTAMEVASMDYGNQLKNRRDGIVERLYTLTSHPSRC 60

Query: 61  RNCDTDRHPDGRSNGCEIKQSSAEAKDGSPSTPQFVGVEGDDDRVDPYGGSFDDEQKTVL 120
           RNCDTDRHPDGRSNGCEIKQS AEAK+GSPSTPQFVGVEGDDDRVDPYGGSFDDEQK VL
Sbjct: 61  RNCDTDRHPDGRSNGCEIKQSFAEAKEGSPSTPQFVGVEGDDDRVDPYGGSFDDEQKKVL 120

Query: 121 EIKEQLEIPHQPEDALVDLLQNLADMDITFQALKETDIGRHVNRLRKHSSNDVRRLVKHL 180
           EIKEQLEIPHQPEDALVDLLQNLADMDITFQALKETDIGRHVNRLRKHSSNDVRRLVKHL
Sbjct: 121 EIKEQLEIPHQPEDALVDLLQNLADMDITFQALKETDIGRHVNRLRKHSSNDVRRLVKHL 180

Query: 181 VRKWKDIVDEWVRLNQPGEQPASLIADGDSPQQKLPQNGYHLVPDFAYSPNPHNGSSGSD 240
           VRKWKDIVDEWVRLNQPGEQ ASLIADGDSPQQKLPQNGYH VPDFAYSPNPHNGSSGSD
Sbjct: 181 VRKWKDIVDEWVRLNQPGEQTASLIADGDSPQQKLPQNGYHQVPDFAYSPNPHNGSSGSD 240

Query: 241 RNNSEPEPKGKPMPRRDAPPKPAQPASTSSLTPQNKHKEQQKEANFDSQKLASARKRLQE 300
           RNNSEPE KGKPMPRRDAPPKPAQPASTSSLTPQNKHKEQQKEANFDSQKLASARKRLQE
Sbjct: 241 RNNSEPELKGKPMPRRDAPPKPAQPASTSSLTPQNKHKEQQKEANFDSQKLASARKRLQE 300

Query: 301 NYKEAENAKRQRTIQVMDIHDLPKPKNTFFSKNKGGGGGGGGSQGRHW 349
           NYKEAENAKRQRTIQVMDIHDLPKPKNTFFSKNKGGGGGGGGSQGRHW
Sbjct: 301 NYKEAENAKRQRTIQVMDIHDLPKPKNTFFSKNKGGGGGGGGSQGRHW 348

[Close]

BLAST of Carg05289 vs. NCBI nr
Match: XP_023518861.1 (probable mediator of RNA polymerase II transcription subunit 26c [Cucurbita pepo subsp. pepo] >XP_023518862.1 probable mediator of RNA polymerase II transcription subunit 26c [Cucurbita pepo subsp. pepo])

HSP 1 Score: 671.4 bits (1731), Expect = 4.2e-189
Identity = 339/348 (97.41%), Postives = 343/348 (98.56%), Query Frame = 0


Query: 1   MVRLDLDDFRTILDTAGVDVWTFIDTAMEVASMDYGNQLKNRRDGIVERLYTLTSHPSRC 60
           MVRLDLDDFRTILDTAGVDVWTFIDTAMEVASMDYGNQLKNRRDGIVERLYTLTSHPSRC
Sbjct: 1   MVRLDLDDFRTILDTAGVDVWTFIDTAMEVASMDYGNQLKNRRDGIVERLYTLTSHPSRC 60

Query: 61  RNCDTDRHPDGRSNGCEIKQSSAEAKDGSPSTPQFVGVEGDDDRVDPYGGSFDDEQKTVL 120
           RNCDTDRH DGRSNGCEIKQSSAEAK+GSPSTPQFVGVEGDDDRVDPYGGSFDDEQK VL
Sbjct: 61  RNCDTDRHLDGRSNGCEIKQSSAEAKEGSPSTPQFVGVEGDDDRVDPYGGSFDDEQKKVL 120

Query: 121 EIKEQLEIPHQPEDALVDLLQNLADMDITFQALKETDIGRHVNRLRKHSSNDVRRLVKHL 180
           +IKEQLEIPHQPEDALVDLLQ+LADMDITFQALKETDIGRHVNRLRKHSSNDVRRLVKHL
Sbjct: 121 DIKEQLEIPHQPEDALVDLLQSLADMDITFQALKETDIGRHVNRLRKHSSNDVRRLVKHL 180

Query: 181 VRKWKDIVDEWVRLNQPGEQPASLIADGDSPQQKLPQNGYHLVPDFAYSPNPHNGSSGSD 240
           VRKWKDIVDEWVRLNQPGEQPASLIADGDSPQQK+PQNGYH VPDFAYSPNPHNGSSGSD
Sbjct: 181 VRKWKDIVDEWVRLNQPGEQPASLIADGDSPQQKVPQNGYHQVPDFAYSPNPHNGSSGSD 240

Query: 241 RNNSEPEPKGKPMPRRDAPPKPAQPASTSSLTPQNKHKEQQKEANFDSQKLASARKRLQE 300
           RNNSEPEPKGKPMPRRDA PKPAQPASTSSLTPQNKHKEQQKEANFDSQKLASARKRLQE
Sbjct: 241 RNNSEPEPKGKPMPRRDALPKPAQPASTSSLTPQNKHKEQQKEANFDSQKLASARKRLQE 300

Query: 301 NYKEAENAKRQRTIQVMDIHDLPKPKNTFFSKNKGGGGGGGGSQGRHW 349
           NYKEAENAKRQRTIQVMDIHDLPKPKNTFFSKNK GGGGGGGSQGRHW
Sbjct: 301 NYKEAENAKRQRTIQVMDIHDLPKPKNTFFSKNKSGGGGGGGSQGRHW 348

[Close]

BLAST of Carg05289 vs. NCBI nr
Match: XP_023003476.1 (probable mediator of RNA polymerase II transcription subunit 26c [Cucurbita maxima] >XP_023003477.1 probable mediator of RNA polymerase II transcription subunit 26c [Cucurbita maxima])

HSP 1 Score: 664.1 bits (1712), Expect = 6.7e-187
Identity = 337/348 (96.84%), Postives = 339/348 (97.41%), Query Frame = 0


Query: 1   MVRLDLDDFRTILDTAGVDVWTFIDTAMEVASMDYGNQLKNRRDGIVERLYTLTSHPSRC 60
           MVRLDLDDFRTILDTAGVDVWTFIDTAMEVASMDYGNQLKNRRDGIVERLYTLTSHPSRC
Sbjct: 1   MVRLDLDDFRTILDTAGVDVWTFIDTAMEVASMDYGNQLKNRRDGIVERLYTLTSHPSRC 60

Query: 61  RNCDTDRHPDGRSNGCEIKQSSAEAKDGSPSTPQFVGVEGDDDRVDPYGGSFDDEQKTVL 120
           RNCDTDRHPDGRSNGCEIKQSS EAK+GSPSTPQFV VEGDDDRVDPYGGSFDDEQK VL
Sbjct: 61  RNCDTDRHPDGRSNGCEIKQSSVEAKEGSPSTPQFVEVEGDDDRVDPYGGSFDDEQKKVL 120

Query: 121 EIKEQLEIPHQPEDALVDLLQNLADMDITFQALKETDIGRHVNRLRKHSSNDVRRLVKHL 180
           EIKEQLEIPHQPEDALVDLLQNLADMDITFQALKETDIGRHVNRLRKHSSNDVRRLVKHL
Sbjct: 121 EIKEQLEIPHQPEDALVDLLQNLADMDITFQALKETDIGRHVNRLRKHSSNDVRRLVKHL 180

Query: 181 VRKWKDIVDEWVRLNQPGEQPASLIADGDSPQQKLPQNGYHLVPDFAYSPNPHNGSSGSD 240
           VRKWKDIVDEWVRLNQPGEQPASLIADGDSPQQK+PQNGYH VPDFAYSPNPHNGSSGSD
Sbjct: 181 VRKWKDIVDEWVRLNQPGEQPASLIADGDSPQQKVPQNGYHQVPDFAYSPNPHNGSSGSD 240

Query: 241 RNNSEPEPKGKPMPRRDAPPKPAQPASTSSLTPQNKHKEQQKEANFDSQKLASARKRLQE 300
           RNNSEPEPKGKPMPRRDAPPKPAQPAST SLTPQNKHKEQQKEANFDS KLASARKRLQE
Sbjct: 241 RNNSEPEPKGKPMPRRDAPPKPAQPASTLSLTPQNKHKEQQKEANFDSLKLASARKRLQE 300

Query: 301 NYKEAENAKRQRTIQVMDIHDLPKPKNTFFSKNKGGGGGGGGSQGRHW 349
           NYKEAENAKRQRTIQVMDIHDLPKPKNTFFSKNK   GGGGGSQGRHW
Sbjct: 301 NYKEAENAKRQRTIQVMDIHDLPKPKNTFFSKNK---GGGGGSQGRHW 345

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BLAST of Carg05289 vs. ExPASy Swiss-Prot
Match: F4KFC7 (Probable mediator of RNA polymerase II transcription subunit 26c OS=Arabidopsis thaliana OX=3702 GN=MED26C PE=1 SV=1)

HSP 1 Score: 337.8 bits (865), Expect = 1.4e-91
Identity = 201/367 (54.77%), Postives = 255/367 (69.48%), Query Frame = 0


Query: 4   LDLDDFRTILDTAGVDVWTFIDTAMEVASMDYGNQLKNRRDGIVERLYTLTSHPSRCRNC 63
           +DLDDFR+++D AGVDVWTFIDTA+ VAS+DYG +LK RRD IVERLY  TS  ++CRNC
Sbjct: 1   MDLDDFRSVMDNAGVDVWTFIDTAILVASLDYGQELKRRRDNIVERLYA-TSMANKCRNC 60

Query: 64  D-------TDRHPDGRSNGCEIKQSSAEAKDGSPSTPQ------FVGVEGDDDRVDPYGG 123
           D       T+      +NG   +++  E ++G  +  +       V VE DDD  DP+ G
Sbjct: 61  DFGGGGNVTEAAIGRVNNGRVHEETEEEDEEGVTAAAEEEVREKSVNVEDDDD-FDPFAG 120

Query: 124 SFDDEQKTVLEIKEQLEIPHQPEDALVDLLQNLADMDITFQALKETDIGRHVNRLRKHSS 183
            FDDEQK+++EIKE+LE P   E++LV+LLQNL DMDITFQAL+ETDIGRHVNR+RKH S
Sbjct: 121 LFDDEQKSIVEIKEKLEDPDLSEESLVELLQNLEDMDITFQALQETDIGRHVNRVRKHPS 180

Query: 184 NDVRRLVKHLVRKWKDIVDEWVRLNQPGE-QPASLIADGDSPQQKLPQNG-YHLVPDFAY 243
           N+VRRL K LV+KWK+ VDEWV+ NQPG+ +P SLIAD DSP QK   NG    VPDF Y
Sbjct: 181 NNVRRLAKQLVKKWKETVDEWVKFNQPGDLEPPSLIADEDSPVQKALHNGSRQQVPDFGY 240

Query: 244 SPNPHNGSSGSDRNNSEPEPKGK-----PMPRRD--APPKPAQPASTSSLTPQNKHKEQQ 303
           SP P NG S S +N++  EP+ K     P PRR+  +P KP++P+ +    P++K   + 
Sbjct: 241 SPVPQNGYSSSSKNSNITEPERKPRPVAPQPRRESPSPAKPSRPSPSQQTIPRDK---EH 300

Query: 304 KEANFDSQKLASARKRLQENYKEAENAKRQRTIQVMDIHDLPKPKNTFFSKNKGGGGGGG 349
           KE +FD     +ARKRLQ+NY++AENAK+QRTIQVMDIHD+PKPK   F   KGG   G 
Sbjct: 301 KEVDFD-----TARKRLQQNYRQAENAKKQRTIQVMDIHDIPKPKKGGFFPRKGGSSQG- 353

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BLAST of Carg05289 vs. ExPASy Swiss-Prot
Match: Q9FHK9 (Probable mediator of RNA polymerase II transcription subunit 26b OS=Arabidopsis thaliana OX=3702 GN=MED26B PE=2 SV=1)

HSP 1 Score: 93.2 bits (230), Expect = 6.2e-18
Identity = 116/414 (28.02%), Postives = 176/414 (42.51%), Query Frame = 0


Query: 6   LDDFRTILDTAG-VDVWTFIDTAMEVASMDYGNQLKNRRDGIVERLYTLTSHPSRCRNCD 65
           LD +R      G  D++  ID A+ VA+ D  N+ K+RRD I E L+  +   +RC  CD
Sbjct: 7   LDSWREYFRRRGDSDIFGIIDHAIMVAATDCPNKFKSRRDKIAELLF--SCRVNRCVGCD 66

Query: 66  -----------TDRHPDGRSNG-------CEIKQSSAEAKDGSP--------STPQFVGV 125
                       +R   G   G        E+   S E+K  S         S   F   
Sbjct: 67  HLELSVPGDDEANRGTTGNGGGGTAVDEDYEVAGGSKESKANSSRGDNNQIVSNYTFDEA 126

Query: 126 EGDDDRVDPYGGSFDDEQKTVLEIKE-QLEIPHQPEDALVDLLQNLADMDITFQALKETD 185
           E   D ++     F    K V  IKE  L    +P   L+D L++L  M +    LK T+
Sbjct: 127 EALSDEIE----EFSVVSKEVARIKEILLNKEDEPNSVLLDSLRHLKLMSLNVDILKSTE 186

Query: 186 IGRHVNRLRKHSSNDVRRLVKHLVRKWKDIVDEWVRLNQ-------PGEQPASLIADGDS 245
           IG+ VN LRKHSS+ +R+L K L+ +WK++VD+WV   +         E     + D + 
Sbjct: 187 IGKAVNGLRKHSSDKIRQLAKTLIAEWKELVDQWVNTTKEITGAEGTPESANPSVLDEEE 246

Query: 246 PQQKLP---------QNGY---HLVPDFAYSPNP-----HNGSSGSDR---NNSEPEPKG 305
               LP          NG+   H      +  NP     HN S   +R   N ++ +P+G
Sbjct: 247 AFPSLPYDVDIFTPEPNGFEISHFFDSLDFDGNPRNSEEHNTSREHERRPQNIAKRKPEG 306

Query: 306 KPMPRRDAPPKPAQPASTSS-----------------------------------LTPQN 325
             M  +DAP +  +P+S +                                    +  + 
Sbjct: 307 TQMRIQDAPFRSIKPSSATDFDGTRRPVKQSTEQRMKNETVSVHKSEKPMIQRKPVVTEQ 366

[Close]

BLAST of Carg05289 vs. ExPASy Swiss-Prot
Match: F4J4Y5 (Probable mediator of RNA polymerase II transcription subunit 26a OS=Arabidopsis thaliana OX=3702 GN=MED26A PE=3 SV=1)

HSP 1 Score: 84.7 bits (208), Expect = 2.2e-15
Identity = 102/390 (26.15%), Postives = 172/390 (44.10%), Query Frame = 0


Query: 4   LDLDDFRTILDTAGVDVWTFIDTAMEVASMDYGNQLKNRRDGIVERLYTLTSHPSRCRNC 63
           + LD +R        D++  ID A+ VA+ D+  + K+R D I E L+  +   SRC  C
Sbjct: 8   VSLDTWREYFRRGDSDIFGIIDHAIMVAAADWPKEFKSRSDRIAELLF--SCKVSRCIGC 67

Query: 64  DTDRHPDGRSNGCEIKQSSAEAKDGSPSTPQFVGVEGDDDRVDPYGGSFDDEQKT----- 123
           D             ++ S A    G  +  + VGV G  DR D    + + E+ +     
Sbjct: 68  D------------HLELSIA----GDEAAVEIVGVGGGGDRGDSGVATGEGEEASVSVDE 127

Query: 124 VLEIKEQLEIPHQPEDA-LVDLLQNLADMDITFQALKETDIGRHVNRLRKHSSNDVRRLV 183
           V+ I++ L      +D+ L++ L+ L  M ++   LK+T+IG+ VN LR+HSS+ + +L 
Sbjct: 128 VMRIRDILSNKDDEKDSVLLESLRKLESMSMSVDILKDTEIGKAVNGLRRHSSDKISKLA 187

Query: 184 KHLVRKWKDIVDEWVRLNQPGEQ------PASLIADGDSPQQKLPQNGYHLVPDFAYSPN 243
           K L  +WK +VD+W  +N P E       P SL       ++  P   + L     Y+P 
Sbjct: 188 KTLFAEWKRLVDQW--MNTPEEMAGTEGTPESLNLSVIDEEEAFPSPPHDL---DIYAPE 247

Query: 244 PHN----------GSSGSDRNNSEPE------------PKG-------------KPMPRR 303
           P+              G+ R++ E +            PKG             +   R 
Sbjct: 248 PNGFELSQILDCLDCDGNPRHSVESKHERKSQSSAGRRPKGTNDANVVGRYCNDQQTRRE 307

Query: 304 DAPPKPAQPASTSSLTPQNKHKEQQKE-----------ANFDSQKLAS------------ 319
           +A  +P + ++T  + P+ + K+ +++                +KLA             
Sbjct: 308 EADVRPMKHSATDVVEPKRQTKQSREQMVSAIQRKPTAVTEQKRKLAGPQQDKLKALDPD 367

[Close]

BLAST of Carg05289 vs. ExPASy Swiss-Prot
Match: Q96MN5 (Transcription elongation factor A N-terminal and central domain-containing protein 2 OS=Homo sapiens OX=9606 GN=TCEANC2 PE=1 SV=1)

HSP 1 Score: 51.2 bits (121), Expect = 2.7e-05
Identity = 32/103 (31.07%), Postives = 53/103 (51.46%), Query Frame = 0


Query: 123 KEQLEIPHQPEDALVDLLQNLADMDITFQALKETDIGRHVNRLRKHSSNDVRRLVKHLVR 182
           K  LE+P Q ++ LV+ LQ L     + + LK T IG  VN++RKHS ++V  L + +  
Sbjct: 46  KTMLELPDQTKENLVEALQELKKKIPSREVLKSTRIGHTVNKMRKHSDSEVASLAREVYT 105

Query: 183 KWKDIVDEWVRLNQPGEQPASLIADGDSPQQKLPQNGYHLVPD 226
           +WK   ++    N+P     S+    D   + L +N   L+ +
Sbjct: 106 EWKTFTEK--HSNRP-----SIEVRSDPKTESLRKNAQKLLSE 141

[Close]

BLAST of Carg05289 vs. ExPASy Swiss-Prot
Match: B0UYI1 (Transcription elongation factor A N-terminal and central domain-containing protein 2 OS=Danio rerio OX=7955 GN=tceanc2 PE=3 SV=1)

HSP 1 Score: 48.5 bits (114), Expect = 1.8e-04
Identity = 24/69 (34.78%), Postives = 42/69 (60.87%), Query Frame = 0


Query: 123 KEQLEIPHQPEDALVDLLQNLADMDITFQALKETDIGRHVNRLRKHSSN-DVRRLVKHLV 182
           K  LE+P QP++ +++ L+ L     + + LK T IG  VN LRKHS + +++ L K + 
Sbjct: 45  KSILELPGQPKENMIEALKELDKKVPSREVLKSTRIGHTVNNLRKHSDDPEIKSLAKEVY 104

Query: 183 RKWKDIVDE 191
           + W+  ++E
Sbjct: 105 KHWRTFIEE 113

[Close]

BLAST of Carg05289 vs. ExPASy TrEMBL
Match: A0A6J1HEQ2 (probable mediator of RNA polymerase II transcription subunit 26c OS=Cucurbita moschata OX=3662 GN=LOC111463303 PE=4 SV=1)

HSP 1 Score: 676.4 bits (1744), Expect = 6.3e-191
Identity = 342/348 (98.28%), Postives = 343/348 (98.56%), Query Frame = 0


Query: 1   MVRLDLDDFRTILDTAGVDVWTFIDTAMEVASMDYGNQLKNRRDGIVERLYTLTSHPSRC 60
           MVRLDLDDFRTILDTAGVDVWTFIDTAMEVASMDYGNQLKNRRDGIVERLYTLTSHPSRC
Sbjct: 1   MVRLDLDDFRTILDTAGVDVWTFIDTAMEVASMDYGNQLKNRRDGIVERLYTLTSHPSRC 60

Query: 61  RNCDTDRHPDGRSNGCEIKQSSAEAKDGSPSTPQFVGVEGDDDRVDPYGGSFDDEQKTVL 120
           RNCDTDRHPDGRSNGCEIKQS AEAK+GSPSTPQFVGVEGDDDRVDPYGGSFDDEQK VL
Sbjct: 61  RNCDTDRHPDGRSNGCEIKQSFAEAKEGSPSTPQFVGVEGDDDRVDPYGGSFDDEQKKVL 120

Query: 121 EIKEQLEIPHQPEDALVDLLQNLADMDITFQALKETDIGRHVNRLRKHSSNDVRRLVKHL 180
           EIKEQLEIPHQPEDALVDLLQNLADMDITFQALKETDIGRHVNRLRKHSSNDVRRLVKHL
Sbjct: 121 EIKEQLEIPHQPEDALVDLLQNLADMDITFQALKETDIGRHVNRLRKHSSNDVRRLVKHL 180

Query: 181 VRKWKDIVDEWVRLNQPGEQPASLIADGDSPQQKLPQNGYHLVPDFAYSPNPHNGSSGSD 240
           VRKWKDIVDEWVRLNQPGEQ ASLIADGDSPQQKLPQNGYH VPDFAYSPNPHNGSSGSD
Sbjct: 181 VRKWKDIVDEWVRLNQPGEQTASLIADGDSPQQKLPQNGYHQVPDFAYSPNPHNGSSGSD 240

Query: 241 RNNSEPEPKGKPMPRRDAPPKPAQPASTSSLTPQNKHKEQQKEANFDSQKLASARKRLQE 300
           RNNSEPE KGKPMPRRDAPPKPAQPASTSSLTPQNKHKEQQKEANFDSQKLASARKRLQE
Sbjct: 241 RNNSEPELKGKPMPRRDAPPKPAQPASTSSLTPQNKHKEQQKEANFDSQKLASARKRLQE 300

Query: 301 NYKEAENAKRQRTIQVMDIHDLPKPKNTFFSKNKGGGGGGGGSQGRHW 349
           NYKEAENAKRQRTIQVMDIHDLPKPKNTFFSKNKGGGGGGGGSQGRHW
Sbjct: 301 NYKEAENAKRQRTIQVMDIHDLPKPKNTFFSKNKGGGGGGGGSQGRHW 348

[Close]

BLAST of Carg05289 vs. ExPASy TrEMBL
Match: A0A6J1KPD0 (probable mediator of RNA polymerase II transcription subunit 26c OS=Cucurbita maxima OX=3661 GN=LOC111497080 PE=4 SV=1)

HSP 1 Score: 664.1 bits (1712), Expect = 3.3e-187
Identity = 337/348 (96.84%), Postives = 339/348 (97.41%), Query Frame = 0


Query: 1   MVRLDLDDFRTILDTAGVDVWTFIDTAMEVASMDYGNQLKNRRDGIVERLYTLTSHPSRC 60
           MVRLDLDDFRTILDTAGVDVWTFIDTAMEVASMDYGNQLKNRRDGIVERLYTLTSHPSRC
Sbjct: 1   MVRLDLDDFRTILDTAGVDVWTFIDTAMEVASMDYGNQLKNRRDGIVERLYTLTSHPSRC 60

Query: 61  RNCDTDRHPDGRSNGCEIKQSSAEAKDGSPSTPQFVGVEGDDDRVDPYGGSFDDEQKTVL 120
           RNCDTDRHPDGRSNGCEIKQSS EAK+GSPSTPQFV VEGDDDRVDPYGGSFDDEQK VL
Sbjct: 61  RNCDTDRHPDGRSNGCEIKQSSVEAKEGSPSTPQFVEVEGDDDRVDPYGGSFDDEQKKVL 120

Query: 121 EIKEQLEIPHQPEDALVDLLQNLADMDITFQALKETDIGRHVNRLRKHSSNDVRRLVKHL 180
           EIKEQLEIPHQPEDALVDLLQNLADMDITFQALKETDIGRHVNRLRKHSSNDVRRLVKHL
Sbjct: 121 EIKEQLEIPHQPEDALVDLLQNLADMDITFQALKETDIGRHVNRLRKHSSNDVRRLVKHL 180

Query: 181 VRKWKDIVDEWVRLNQPGEQPASLIADGDSPQQKLPQNGYHLVPDFAYSPNPHNGSSGSD 240
           VRKWKDIVDEWVRLNQPGEQPASLIADGDSPQQK+PQNGYH VPDFAYSPNPHNGSSGSD
Sbjct: 181 VRKWKDIVDEWVRLNQPGEQPASLIADGDSPQQKVPQNGYHQVPDFAYSPNPHNGSSGSD 240

Query: 241 RNNSEPEPKGKPMPRRDAPPKPAQPASTSSLTPQNKHKEQQKEANFDSQKLASARKRLQE 300
           RNNSEPEPKGKPMPRRDAPPKPAQPAST SLTPQNKHKEQQKEANFDS KLASARKRLQE
Sbjct: 241 RNNSEPEPKGKPMPRRDAPPKPAQPASTLSLTPQNKHKEQQKEANFDSLKLASARKRLQE 300

Query: 301 NYKEAENAKRQRTIQVMDIHDLPKPKNTFFSKNKGGGGGGGGSQGRHW 349
           NYKEAENAKRQRTIQVMDIHDLPKPKNTFFSKNK   GGGGGSQGRHW
Sbjct: 301 NYKEAENAKRQRTIQVMDIHDLPKPKNTFFSKNK---GGGGGSQGRHW 345

[Close]

BLAST of Carg05289 vs. ExPASy TrEMBL
Match: A0A6J1GFA3 (probable mediator of RNA polymerase II transcription subunit 26c OS=Cucurbita moschata OX=3662 GN=LOC111453638 PE=4 SV=1)

HSP 1 Score: 609.4 bits (1570), Expect = 9.5e-171
Identity = 311/348 (89.37%), Postives = 324/348 (93.10%), Query Frame = 0


Query: 1   MVRLDLDDFRTILDTAGVDVWTFIDTAMEVASMDYGNQLKNRRDGIVERLYTLTSHPSRC 60
           MVRLDLDDFRTILDTAGVDVWTFIDTAMEVASMDYGNQLKNRRDGIVERLY LTS P+RC
Sbjct: 1   MVRLDLDDFRTILDTAGVDVWTFIDTAMEVASMDYGNQLKNRRDGIVERLYALTSPPTRC 60

Query: 61  RNCDTDRHPDGRSNGCEIKQSSAEAKDGSPSTPQFVGVEGDDDRVDPYGGSFDDEQKTVL 120
           RNCDTDR+ DGRSNGCEIKQS  EAK+ SPSTPQFV VEGDD+ VDPYGG FDDEQK VL
Sbjct: 61  RNCDTDRYNDGRSNGCEIKQSPVEAKEASPSTPQFVVVEGDDEGVDPYGGLFDDEQKKVL 120

Query: 121 EIKEQLEIPHQPEDALVDLLQNLADMDITFQALKETDIGRHVNRLRKHSSNDVRRLVKHL 180
           EIKEQLEIPHQPEDALV+LLQNLADMDITFQALKETDIGRHVNRLRKHSSNDVRRLVKHL
Sbjct: 121 EIKEQLEIPHQPEDALVELLQNLADMDITFQALKETDIGRHVNRLRKHSSNDVRRLVKHL 180

Query: 181 VRKWKDIVDEWVRLNQPGEQPASLIADGDSPQQKLPQNGYHLVPDFAYSPNPHNGSSGSD 240
           VRKWK+IVDEWVRLNQPGEQ A+LIADGDSPQQK+ QNGYH VPDFAYSPNPHNG SGSD
Sbjct: 181 VRKWKEIVDEWVRLNQPGEQTATLIADGDSPQQKVTQNGYHQVPDFAYSPNPHNGGSGSD 240

Query: 241 RNNSEPEPKGKPMPRRDAPPKPAQPASTSSLTPQNKHKEQQKEANFDSQKLASARKRLQE 300
           RNN EPEPKGK +PRRDAPPKPAQPA  SS TPQN+ KEQQKEANFDSQKLASARKRLQE
Sbjct: 241 RNNVEPEPKGKSVPRRDAPPKPAQPAPMSSYTPQNRQKEQQKEANFDSQKLASARKRLQE 300

Query: 301 NYKEAENAKRQRTIQVMDIHDLPKPKNTFFSKNKGGGGGGGGSQGRHW 349
           NYKEAENAK+QRTIQVMDIH++PKPKNTFFSKNK   G GGGSQGRHW
Sbjct: 301 NYKEAENAKKQRTIQVMDIHEIPKPKNTFFSKNK---GTGGGSQGRHW 345

[Close]

BLAST of Carg05289 vs. ExPASy TrEMBL
Match: A0A5A7SIU9 (Putative mediator of RNA polymerase II transcription subunit 26c OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold255G00130 PE=4 SV=1)

HSP 1 Score: 607.8 bits (1566), Expect = 2.8e-170
Identity = 310/348 (89.08%), Postives = 320/348 (91.95%), Query Frame = 0


Query: 1   MVRLDLDDFRTILDTAGVDVWTFIDTAMEVASMDYGNQLKNRRDGIVERLYTLTSHPSRC 60
           MVRLDLDDFRTILDTAGVDVWTFIDTAMEVAS+DYGNQLKNRRDGIVERLY LTS PSRC
Sbjct: 1   MVRLDLDDFRTILDTAGVDVWTFIDTAMEVASLDYGNQLKNRRDGIVERLYALTSPPSRC 60

Query: 61  RNCDTDRHPDGRSNGCEIKQSSAEAKDGSPSTPQFVGVEGDDDRVDPYGGSFDDEQKTVL 120
           RNCDTDR+ DGRSNGCEIKQ S E K  SPSTPQFV VEGDDD  DPY G FDDEQK VL
Sbjct: 61  RNCDTDRNHDGRSNGCEIKQGSGEVKGASPSTPQFVVVEGDDDGADPYAGLFDDEQKKVL 120

Query: 121 EIKEQLEIPHQPEDALVDLLQNLADMDITFQALKETDIGRHVNRLRKHSSNDVRRLVKHL 180
           EIKEQLEIPHQPEDALV+LLQNLADMDITFQALKETDIGRHVNRLRKHSSNDVRRLVKHL
Sbjct: 121 EIKEQLEIPHQPEDALVELLQNLADMDITFQALKETDIGRHVNRLRKHSSNDVRRLVKHL 180

Query: 181 VRKWKDIVDEWVRLNQPGEQPASLIADGDSPQQKLPQNGYHLVPDFAYSPNPHNGSSGSD 240
           VRKWK+IVDEWVRLNQPGEQ A+L+ADGDSPQQK PQNGYH VPDFAYSPNPHNG SGSD
Sbjct: 181 VRKWKEIVDEWVRLNQPGEQTATLLADGDSPQQKAPQNGYHQVPDFAYSPNPHNGGSGSD 240

Query: 241 RNNSEPEPKGKPMPRRDAPPKPAQPASTSSLTPQNKHKEQQKEANFDSQKLASARKRLQE 300
           RNNSEPEPKGK +PRRDAPPKP Q A TSSLTPQN+ KEQQKEANFDSQKLASARKRLQE
Sbjct: 241 RNNSEPEPKGKSVPRRDAPPKPTQQAPTSSLTPQNRQKEQQKEANFDSQKLASARKRLQE 300

Query: 301 NYKEAENAKRQRTIQVMDIHDLPKPKNTFFSKNKGGGGGGGGSQGRHW 349
           NYKEAENAKRQRTIQVMDIH++PKPKN FFSKNK   G GGGSQGRHW
Sbjct: 301 NYKEAENAKRQRTIQVMDIHEIPKPKNAFFSKNK---GSGGGSQGRHW 345

[Close]

BLAST of Carg05289 vs. ExPASy TrEMBL
Match: A0A1S3B2G2 (probable mediator of RNA polymerase II transcription subunit 26c OS=Cucumis melo OX=3656 GN=LOC103485244 PE=4 SV=1)

HSP 1 Score: 607.8 bits (1566), Expect = 2.8e-170
Identity = 310/348 (89.08%), Postives = 320/348 (91.95%), Query Frame = 0


Query: 1   MVRLDLDDFRTILDTAGVDVWTFIDTAMEVASMDYGNQLKNRRDGIVERLYTLTSHPSRC 60
           MVRLDLDDFRTILDTAGVDVWTFIDTAMEVAS+DYGNQLKNRRDGIVERLY LTS PSRC
Sbjct: 1   MVRLDLDDFRTILDTAGVDVWTFIDTAMEVASLDYGNQLKNRRDGIVERLYALTSPPSRC 60

Query: 61  RNCDTDRHPDGRSNGCEIKQSSAEAKDGSPSTPQFVGVEGDDDRVDPYGGSFDDEQKTVL 120
           RNCDTDR+ DGRSNGCEIKQ S E K  SPSTPQFV VEGDDD  DPY G FDDEQK VL
Sbjct: 61  RNCDTDRNHDGRSNGCEIKQGSGEVKGASPSTPQFVVVEGDDDGADPYAGLFDDEQKKVL 120

Query: 121 EIKEQLEIPHQPEDALVDLLQNLADMDITFQALKETDIGRHVNRLRKHSSNDVRRLVKHL 180
           EIKEQLEIPHQPEDALV+LLQNLADMDITFQALKETDIGRHVNRLRKHSSNDVRRLVKHL
Sbjct: 121 EIKEQLEIPHQPEDALVELLQNLADMDITFQALKETDIGRHVNRLRKHSSNDVRRLVKHL 180

Query: 181 VRKWKDIVDEWVRLNQPGEQPASLIADGDSPQQKLPQNGYHLVPDFAYSPNPHNGSSGSD 240
           VRKWK+IVDEWVRLNQPGEQ A+L+ADGDSPQQK PQNGYH VPDFAYSPNPHNG SGSD
Sbjct: 181 VRKWKEIVDEWVRLNQPGEQTATLLADGDSPQQKAPQNGYHQVPDFAYSPNPHNGGSGSD 240

Query: 241 RNNSEPEPKGKPMPRRDAPPKPAQPASTSSLTPQNKHKEQQKEANFDSQKLASARKRLQE 300
           RNNSEPEPKGK +PRRDAPPKP Q A TSSLTPQN+ KEQQKEANFDSQKLASARKRLQE
Sbjct: 241 RNNSEPEPKGKSVPRRDAPPKPTQQAPTSSLTPQNRQKEQQKEANFDSQKLASARKRLQE 300

Query: 301 NYKEAENAKRQRTIQVMDIHDLPKPKNTFFSKNKGGGGGGGGSQGRHW 349
           NYKEAENAKRQRTIQVMDIH++PKPKN FFSKNK   G GGGSQGRHW
Sbjct: 301 NYKEAENAKRQRTIQVMDIHEIPKPKNAFFSKNK---GSGGGSQGRHW 345

[Close]

BLAST of Carg05289 vs. TAIR 10
Match: AT5G09850.1 (Transcription elongation factor (TFIIS) family protein )

HSP 1 Score: 337.8 bits (865), Expect = 1.0e-92
Identity = 201/367 (54.77%), Postives = 255/367 (69.48%), Query Frame = 0


Query: 4   LDLDDFRTILDTAGVDVWTFIDTAMEVASMDYGNQLKNRRDGIVERLYTLTSHPSRCRNC 63
           +DLDDFR+++D AGVDVWTFIDTA+ VAS+DYG +LK RRD IVERLY  TS  ++CRNC
Sbjct: 1   MDLDDFRSVMDNAGVDVWTFIDTAILVASLDYGQELKRRRDNIVERLYA-TSMANKCRNC 60

Query: 64  D-------TDRHPDGRSNGCEIKQSSAEAKDGSPSTPQ------FVGVEGDDDRVDPYGG 123
           D       T+      +NG   +++  E ++G  +  +       V VE DDD  DP+ G
Sbjct: 61  DFGGGGNVTEAAIGRVNNGRVHEETEEEDEEGVTAAAEEEVREKSVNVEDDDD-FDPFAG 120

Query: 124 SFDDEQKTVLEIKEQLEIPHQPEDALVDLLQNLADMDITFQALKETDIGRHVNRLRKHSS 183
            FDDEQK+++EIKE+LE P   E++LV+LLQNL DMDITFQAL+ETDIGRHVNR+RKH S
Sbjct: 121 LFDDEQKSIVEIKEKLEDPDLSEESLVELLQNLEDMDITFQALQETDIGRHVNRVRKHPS 180

Query: 184 NDVRRLVKHLVRKWKDIVDEWVRLNQPGE-QPASLIADGDSPQQKLPQNG-YHLVPDFAY 243
           N+VRRL K LV+KWK+ VDEWV+ NQPG+ +P SLIAD DSP QK   NG    VPDF Y
Sbjct: 181 NNVRRLAKQLVKKWKETVDEWVKFNQPGDLEPPSLIADEDSPVQKALHNGSRQQVPDFGY 240

Query: 244 SPNPHNGSSGSDRNNSEPEPKGK-----PMPRRD--APPKPAQPASTSSLTPQNKHKEQQ 303
           SP P NG S S +N++  EP+ K     P PRR+  +P KP++P+ +    P++K   + 
Sbjct: 241 SPVPQNGYSSSSKNSNITEPERKPRPVAPQPRRESPSPAKPSRPSPSQQTIPRDK---EH 300

Query: 304 KEANFDSQKLASARKRLQENYKEAENAKRQRTIQVMDIHDLPKPKNTFFSKNKGGGGGGG 349
           KE +FD     +ARKRLQ+NY++AENAK+QRTIQVMDIHD+PKPK   F   KGG   G 
Sbjct: 301 KEVDFD-----TARKRLQQNYRQAENAKKQRTIQVMDIHDIPKPKKGGFFPRKGGSSQG- 353

[Close]

BLAST of Carg05289 vs. TAIR 10
Match: AT5G05140.1 (Transcription elongation factor (TFIIS) family protein )

HSP 1 Score: 93.2 bits (230), Expect = 4.4e-19
Identity = 116/414 (28.02%), Postives = 176/414 (42.51%), Query Frame = 0


Query: 6   LDDFRTILDTAG-VDVWTFIDTAMEVASMDYGNQLKNRRDGIVERLYTLTSHPSRCRNCD 65
           LD +R      G  D++  ID A+ VA+ D  N+ K+RRD I E L+  +   +RC  CD
Sbjct: 7   LDSWREYFRRRGDSDIFGIIDHAIMVAATDCPNKFKSRRDKIAELLF--SCRVNRCVGCD 66

Query: 66  -----------TDRHPDGRSNG-------CEIKQSSAEAKDGSP--------STPQFVGV 125
                       +R   G   G        E+   S E+K  S         S   F   
Sbjct: 67  HLELSVPGDDEANRGTTGNGGGGTAVDEDYEVAGGSKESKANSSRGDNNQIVSNYTFDEA 126

Query: 126 EGDDDRVDPYGGSFDDEQKTVLEIKE-QLEIPHQPEDALVDLLQNLADMDITFQALKETD 185
           E   D ++     F    K V  IKE  L    +P   L+D L++L  M +    LK T+
Sbjct: 127 EALSDEIE----EFSVVSKEVARIKEILLNKEDEPNSVLLDSLRHLKLMSLNVDILKSTE 186

Query: 186 IGRHVNRLRKHSSNDVRRLVKHLVRKWKDIVDEWVRLNQ-------PGEQPASLIADGDS 245
           IG+ VN LRKHSS+ +R+L K L+ +WK++VD+WV   +         E     + D + 
Sbjct: 187 IGKAVNGLRKHSSDKIRQLAKTLIAEWKELVDQWVNTTKEITGAEGTPESANPSVLDEEE 246

Query: 246 PQQKLP---------QNGY---HLVPDFAYSPNP-----HNGSSGSDR---NNSEPEPKG 305
               LP          NG+   H      +  NP     HN S   +R   N ++ +P+G
Sbjct: 247 AFPSLPYDVDIFTPEPNGFEISHFFDSLDFDGNPRNSEEHNTSREHERRPQNIAKRKPEG 306

Query: 306 KPMPRRDAPPKPAQPASTSS-----------------------------------LTPQN 325
             M  +DAP +  +P+S +                                    +  + 
Sbjct: 307 TQMRIQDAPFRSIKPSSATDFDGTRRPVKQSTEQRMKNETVSVHKSEKPMIQRKPVVTEQ 366

[Close]

BLAST of Carg05289 vs. TAIR 10
Match: AT3G10820.2 (Transcription elongation factor (TFIIS) family protein )

HSP 1 Score: 84.7 bits (208), Expect = 1.6e-16
Identity = 102/390 (26.15%), Postives = 172/390 (44.10%), Query Frame = 0


Query: 4   LDLDDFRTILDTAGVDVWTFIDTAMEVASMDYGNQLKNRRDGIVERLYTLTSHPSRCRNC 63
           + LD +R        D++  ID A+ VA+ D+  + K+R D I E L+  +   SRC  C
Sbjct: 8   VSLDTWREYFRRGDSDIFGIIDHAIMVAAADWPKEFKSRSDRIAELLF--SCKVSRCIGC 67

Query: 64  DTDRHPDGRSNGCEIKQSSAEAKDGSPSTPQFVGVEGDDDRVDPYGGSFDDEQKT----- 123
           D             ++ S A    G  +  + VGV G  DR D    + + E+ +     
Sbjct: 68  D------------HLELSIA----GDEAAVEIVGVGGGGDRGDSGVATGEGEEASVSVDE 127

Query: 124 VLEIKEQLEIPHQPEDA-LVDLLQNLADMDITFQALKETDIGRHVNRLRKHSSNDVRRLV 183
           V+ I++ L      +D+ L++ L+ L  M ++   LK+T+IG+ VN LR+HSS+ + +L 
Sbjct: 128 VMRIRDILSNKDDEKDSVLLESLRKLESMSMSVDILKDTEIGKAVNGLRRHSSDKISKLA 187

Query: 184 KHLVRKWKDIVDEWVRLNQPGEQ------PASLIADGDSPQQKLPQNGYHLVPDFAYSPN 243
           K L  +WK +VD+W  +N P E       P SL       ++  P   + L     Y+P 
Sbjct: 188 KTLFAEWKRLVDQW--MNTPEEMAGTEGTPESLNLSVIDEEEAFPSPPHDL---DIYAPE 247

Query: 244 PHN----------GSSGSDRNNSEPE------------PKG-------------KPMPRR 303
           P+              G+ R++ E +            PKG             +   R 
Sbjct: 248 PNGFELSQILDCLDCDGNPRHSVESKHERKSQSSAGRRPKGTNDANVVGRYCNDQQTRRE 307

Query: 304 DAPPKPAQPASTSSLTPQNKHKEQQKE-----------ANFDSQKLAS------------ 319
           +A  +P + ++T  + P+ + K+ +++                +KLA             
Sbjct: 308 EADVRPMKHSATDVVEPKRQTKQSREQMVSAIQRKPTAVTEQKRKLAGPQQDKLKALDPD 367

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BLAST of Carg05289 vs. TAIR 10
Match: AT3G10820.1 (Transcription elongation factor (TFIIS) family protein )

HSP 1 Score: 83.2 bits (204), Expect = 4.6e-16
Identity = 71/242 (29.34%), Postives = 116/242 (47.93%), Query Frame = 0


Query: 4   LDLDDFRTILDTAGVDVWTFIDTAMEVASMDYGNQLKNRRDGIVERLYTLTSHPSRCRNC 63
           + LD +R        D++  ID A+ VA+ D+  + K+R D I E L+  +   SRC  C
Sbjct: 8   VSLDTWREYFRRGDSDIFGIIDHAIMVAAADWPKEFKSRSDRIAELLF--SCKVSRCIGC 67

Query: 64  DTDRHPDGRSNGCEIKQSSAEAKDGSPSTPQFVGVEGDDDRVDPYGGSFDDEQKT----- 123
           D             ++ S A    G  +  + VGV G  DR D    + + E+ +     
Sbjct: 68  D------------HLELSIA----GDEAAVEIVGVGGGGDRGDSGVATGEGEEASVSVDE 127

Query: 124 VLEIKEQLEIPHQPEDA-LVDLLQNLADMDITFQALKETDIGRHVNRLRKHSSNDVRRLV 183
           V+ I++ L      +D+ L++ L+ L  M ++   LK+T+IG+ VN LR+HSS+ + +L 
Sbjct: 128 VMRIRDILSNKDDEKDSVLLESLRKLESMSMSVDILKDTEIGKAVNGLRRHSSDKISKLA 187

Query: 184 KHLVRKWKDIVDEWVRLNQPGEQ------PASLIADGDSPQQKLPQNGYHLVPDFAYSPN 234
           K L  +WK +VD+W  +N P E       P SL       ++  P   + L     Y+P 
Sbjct: 188 KTLFAEWKRLVDQW--MNTPEEMAGTEGTPESLNLSVIDEEEAFPSPPHDL---DIYAPE 226

The following BLAST results are available for this feature:

BLAST of Carg05289 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG7027126.1	3.0e-195	100.00	putative mediator of RNA polymerase II transcription subunit 26c, partial [Cucur...	[more]
KAG6595110.1	1.5e-194	99.71	putative mediator of RNA polymerase II transcription subunit 26c, partial [Cucur...	[more]
XP_022962950.1	1.3e-190	98.28	probable mediator of RNA polymerase II transcription subunit 26c [Cucurbita mosc...	[more]
XP_023518861.1	4.2e-189	97.41	probable mediator of RNA polymerase II transcription subunit 26c [Cucurbita pepo...	[more]
XP_023003476.1	6.7e-187	96.84	probable mediator of RNA polymerase II transcription subunit 26c [Cucurbita maxi...	[more]

BLAST of Carg05289 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
F4KFC7	1.4e-91	54.77	Probable mediator of RNA polymerase II transcription subunit 26c OS=Arabidopsis ...	[more]
Q9FHK9	6.2e-18	28.02	Probable mediator of RNA polymerase II transcription subunit 26b OS=Arabidopsis ...	[more]
F4J4Y5	2.2e-15	26.15	Probable mediator of RNA polymerase II transcription subunit 26a OS=Arabidopsis ...	[more]
Q96MN5	2.7e-05	31.07	Transcription elongation factor A N-terminal and central domain-containing prote...	[more]
B0UYI1	1.8e-04	34.78	Transcription elongation factor A N-terminal and central domain-containing prote...	[more]

BLAST of Carg05289 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1HEQ2	6.3e-191	98.28	probable mediator of RNA polymerase II transcription subunit 26c OS=Cucurbita mo...	[more]
A0A6J1KPD0	3.3e-187	96.84	probable mediator of RNA polymerase II transcription subunit 26c OS=Cucurbita ma...	[more]
A0A6J1GFA3	9.5e-171	89.37	probable mediator of RNA polymerase II transcription subunit 26c OS=Cucurbita mo...	[more]
A0A5A7SIU9	2.8e-170	89.08	Putative mediator of RNA polymerase II transcription subunit 26c OS=Cucumis melo...	[more]
A0A1S3B2G2	2.8e-170	89.08	probable mediator of RNA polymerase II transcription subunit 26c OS=Cucumis melo...	[more]

BLAST of Carg05289 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G09850.1	1.0e-92	54.77	Transcription elongation factor (TFIIS) family protein	[more]
AT5G05140.1	4.4e-19	28.02	Transcription elongation factor (TFIIS) family protein	[more]
AT3G10820.2	1.6e-16	26.15	Transcription elongation factor (TFIIS) family protein	[more]
AT3G10820.1	4.6e-16	29.34	Transcription elongation factor (TFIIS) family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Silver-seed gourd (SMH-JMG-627) v2
Date Performed: 2021-10-25

Position :

Zoom :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 288..315
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 80..101
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 201..348
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 276..319
None	No IPR available	PANTHER	PTHR47210:SF1	MEDIATOR OF RNA POLYMERASE II TRANSCRIPTION SUBUNIT 26C-RELATED	coord: 4..348
None	No IPR available	CDD	cd00183	TFIIS_I	coord: 116..189 e-value: 2.05828E-19 score: 79.2746
IPR003617	Transcription elongation factor, TFIIS/CRSP70, N-terminal, sub-type	SMART	SM00509	TFS2_5	coord: 119..190 e-value: 4.0E-10 score: 49.6
IPR035441	TFIIS/LEDGF domain superfamily	GENE3D	1.20.930.10	Conserved domain common to transcription factors TFIIS, elongin A, CRSP70	coord: 111..202 e-value: 7.9E-24 score: 85.2
IPR035441	TFIIS/LEDGF domain superfamily	SUPERFAMILY	47676	Conserved domain common to transcription factors TFIIS, elongin A, CRSP70	coord: 117..199
IPR017923	Transcription factor IIS, N-terminal	PFAM	PF08711	Med26	coord: 139..188 e-value: 5.3E-13 score: 48.8
IPR017923	Transcription factor IIS, N-terminal	PROSITE	PS51319	TFIIS_N	coord: 117..191 score: 25.220772
IPR044790	Mediator of RNA polymerase II transcription subunit 26c-like	PANTHER	PTHR47210	MEDIATOR OF RNA POLYMERASE II TRANSCRIPTION SUBUNIT 26C-RELATED	coord: 4..348

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Carg05289-RA	Carg05289-RA	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0005634	nucleus