Carg05258 (gene) Silver-seed gourd (SMH-JMG-627) v2

Overview


Name	Carg05258
Type	gene
Organism	Cucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
Description	50S ribosomal protein L13
Location	Carg_Chr07: 3798921 .. 3803933 (+)
RNA-Seq Expression	Carg05258
Synteny	Carg05258

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTGTTAAGCTACAGAAACGAATCAAGTTTGTTTCTGGGATCGTCGTATTTCACAGGTTTGCTTTCTATAGTCTTTATTCCGGATTCTAGTGAATTATTTCGTTTGTTAATTGTTAAGAATTGAGTGAACTGATAAATTTCTTCGTGGAGAACAGTGAAGAAGCTAGGAATTTGAGAAATGGCAAGCCAAGTAGCTAGTACTTTCAATGGCAACATGAAGGCAATACTCCTTTACTTTTACTCTTGTGCTTATTAATCATTGGAATGATTGTGTGATGCATATTGTAGTTCCTTACATATTAGAAATTGGCTTCTTGTTTGCTGCCAAGTGTATGTAGAATTTATTTGTGGATTTTCTTTTCGTTTCTGTTGCAATCTATTGATGAGTTTGTGAAATTTGTTTGTTTTTGTCGTTTGGAGTGTCATTAAGTTGTGGTTGTGATTATGTGTGTTATCGTATAGTTGGTTTTGAAAATGATACAGTGTCTAGTAGCTCTTGTTACATAATCTCATGCCATTGTTAGAGGAAATGTTTATTTGGAAACTCAGGTGCACCTGTCTGTCTTCTTTAATTGATAAGAGGCGTTGAATTAAGAAATTATGGACATTCACAAGTCTTGTAGGCAAGCTTTGAAATTTAAGGTTAATATGGTCAACATTTTGTTTTGTGTTTGATGTGTTATGTGTTGTGTTTAATTGACAAGTTATTTTATCTTGGCCAAGTGGGAATTTGGCATAGGCAACATCAGAAAAAGGAGTAGGACACCCCTCCGAGTGGGCTAAAGATTCTATAGTGGACTATTTGGTATTCCATATTTAAGGACAATTATGGGTCTTCGATTTAGATGATTCATGAAGGAAAGTTTATATAGTAGCTGAAGAAGCCTTTGGGTTCAATTACGTGCTTAAAAGATACAAACTATAAAAGGGAGCGAAAAAAAGGAAATAAAAATTACAATGGATGATGCAAAACCAAATGAAGCATAAAATCTTGAAAAGAATATCCATCCAGTAGATCGGGAAGAGCACACTAAGTAGAGGCGAAATAATGAATCGAGCCAAACCAAACTATAAGCAGAAATTGAGCCAGAAATCACGAACAACAAAAGAGCATTGAAAGGATTGATGATTGCCAAAATGCTAAGAGGACTAGGAAGAATAAACCAACAACAATGACAGGCCGAGTTCCCTTCTACTTCAATAGAAGAATGCTAAAACAAGGGACATTCCAAAATAAAATCTCCGACCAATGAATGCAAAGCAACAAAAGAATCCACCTATTGCCAAATAAAAAAGATGATCAAGAATTGTGCGAAATTGACTTGAAACCCTGGAATAACCAAAGAAAATTCCCATTCCTTGGTAACTAAAATCTTGCCAATAGCATCAACAAGAAAACCAGCCAACCACTTTCAAAGTCCATAAGAACTTAATAAATGTAGCATCAAGATCAAATCTTAACCTGAGGAGACAAAGGATGAATTTCTTTCATCTACAATCCGATGCCTTTATTGAAGATGAAAACGGAACTGAACTGGTCCTTGCAACTGGTGTTAAAGATTGTTTACAGAATGTTCTTGGCTCTACACTGCTCAAACTGATTTCAGATTCATCTTCAGAATCAACATCATTCATACAAGAATGGAGGACAATATCCTTTGGACGAGATTCACCTTTAATTAAGTTATCATTGGACCCTGGAGGGGAAATTATTGATTGGCTTAATGAATTAGAAGAACAAGGCATCTGTTGGTTCAGCTGTTTATCATGAGAATAATTCCTGATTAGTAGGAATGAGCAGCCTTACACAAGATTCTTCAAAAATATTAGCATTAAGATTTGAATGTTCTTTAGTGAGAGAAAGGGCCTTCATCCGAGAATAATAAAGTGGAAATGAGTCTTTAAAAATAGGAAGCTTGTGAGATTCCTTAGAAGCTCGAGAGAGAACTTAGGGGTTACCTTATTAACACCTTAAAGATAGAGAGTTGACTGATCCGACACTTCATTAGTTAGGACAAACCATCATTAATGGGATGATGGTCGGTCGTACTATTAATTTTTGCAACACTCTAATTTTCTGGTTGGGCAATAGAATCAGTTGACTTACTAAATGCTAGTGATTCATGAAATGGGGCCTCTGAAATGCAATTTTCGTTTAATCAACCTCCTCAACATGCAGTCAAGGAGTATTACGTATTAAATACAATCTCTCTTGAGTTATTAATAGTGTTCCAACCCAGAACCAAAGATGTCTCTTTAACACCTGATATTTCTGGAATAGATTCCAAAACGTAAGATTCTACTTCCAAACCACGCCAATAAGGCATATTAATAGCTACATCCTTTTAAATGCTTCTTCACTTGAACTGGTAATTGGATTCACACCCTTATCAAATGCTCATTAGGTAATACTTGAACCTCATCTTCTGGTGAAGCGCATTGCCAAAGCAACTTTTCATCTTCTATTACTGATTGAACTTGGAAAAAGTGAAATGGATTCCTATAGTCACAAAGATCTAAACTTCTTTAAAATGGAATCGAAATTGAGGGTGAATCAATAGCCACAATGTCCCCAAAATTAAGAGAAGTGTTGCCGCTTAATTGAGGGTGAATCAATAGCCACAATGTCCCCAAAATTAAGAGAAGTGTTGCCGCTTACCTTGCCTTGAATTTTGATCATCACTGGAACGAAGCCACATGAATTTTTCTTTACTTCAATATATGCCGCTTCATAATCAATCAAATTAGGAGTTTTGGATAGATTCCAATCAGTCCACCAAAAAACACCCCAATTGCTTCAAAGGTGTCTTTGTTCCAGTATTGCAAGGGTAGTTCAATATCTTTCCTCTGTAACCCCACCCTAAATTTTAGCTTTTTGAAAGACCAATATTCAAACTTATTTTCAAGTGGATATATATTTATCTATTTACCTTCTGTCCCAAGATCACCTAAAAGTCTGTCATCCTACATTTGCAAAAGAGCCTTATCAGCCATGAACGGATTTATCACAACCTTTTCCATATCTTCCATCCACCATGGGATTCAAACGTGAAGTCGTCAACAAAAGCATTCAAATCAAGACTTGCCACGTTTTCTTCTTTCACCCCAAAACTCATTTCTACTAAGAGGTGATGATCTTGTAGAAACGTGTAACCTCTTAGAGACTGCTTCCTCTATTCTCTGCTTTCCATCCGTGATCTTACTCACAACATTTGCGTAAGTGAAGTTCAATTTATGATCATCATTCATGATGGCATAAATACTGCATACAAAATTCAACGGACTTGTTAATTTGAGTTGTTGCTATATGCATACATTGTGTAAAAGGAGAAGTGAAGACTTAAAATTATATATTGTGTTCATGTACTTCTAAACACTTTCCAATGATCGAAGGATCATGTTTGCATGATTGACAAAGTTGTTTTGGGATATGGGGGGGTTTATTTTGGCACTTTTGCTTCCTGATGTTATGTGGTATATTTGATTGGAAAGAAAGAAACTTTTTATTTGGTCAAAAGTTCATCACCCAGGAAATAATTTTTTTTTATAATAGCCTCTGCTCGGTGTTCTTTGGATAAATACTTCTGTTACTTATGGGTACACAAGCATTAATATTGTTATGCCCTAATAATGTTCCAGAGAGCACTTGCTGGAATAAAACGCATCAATTTGGAAGGTCTGAGGTGGAGAGTGTTTGACGCCAAAGGCCAGGTTAGAATGCAATGTTGATCACTTCACGTTTGGTTTTGCAGATTATGAGATAGTATGTCCAATGGTAGTGATATTTGTCATAAACAGAAACAGCTATTCTAATTCTTTCTACTAGGTTCTTGGAAGATTGGCATCTCAAATATCTACCGTGATTCAAGGCAAGGATAAGCCAACATACGCACCAAATCGGGATGATGGGGATATGTGCATTGTGCTTAATGCTAAGGATATCTATGTCTCAGGAAGAAAGCCCAGTGATAAAATTTATTACTGGCATACTGGGTAAGTACTCTATTATGTTGGTCATGGACATGAAATCATGAGTTTGTTTGTTAGTTCTTTATCTTCATAAAGATTAGAACAACATTTGTTTTGGTGAATTTGAGCTGCCGGTTGAATCTAAATGGCTCAATTTCTAGCTGCCAAAAAGTAGAGGAAGGGGATCATTTTAATGTTGATTTGGTAATAATTTGTTATGCACTGTGTTTCGTGTTTTGTTTTGAACTATGCGTGGCTTGTAGGTATGTCGGCCATGTCAAGGAAAGAAGTTTGAAAGATCAGATGGCCAAAGACCCTACCGAAGTCATACGTAAAGCTGTATTGCGCATGCTGCCACGAAATAAACTGCGTGATGTCGGTTCTTAAATTCATTTAGTGTTTCACAATTTCTGATACCTAATGAATTAACTTCAGTTCTTGATAAAATCTGCATTCCATTAGTTCGTCATTGTTCAGGTATCTTATATTTGAAGCTTTATTTATTCTATTACATTACATGGATGTAGGATAGAGATCGAAAACTGAGAATTTTTGCTGGAGATGAACACCCATTTGGCGACCGACCACTCGAGCCATATATCATGCCACCTCGTAATGTAAGAGAGATGCGTCCACGTGCAAGACGAGCCATGATTCGAGCACAAAAAAAGGCAGAACAACAACAAAATAACGACAATCATTCAAAGAAAAATCGAAAGAAGGAAGAAAAGGTAGAAGAAGTGATTGCATAAACAGGACCTGATTTCTTCCATCCCAGTGGAGTTTGTTTGGATCATATAATCAGCCATGGCATAGCTGAAGTAGTCTGGAACTCATTTAGTTGCCTCAAAGCTGGCTTTAAATTTGGTTGTAGCTTGGATTTGATATCATTTGTAAAGTTATGATGTCATGTTTTCTTCAATGCCTGAATTTCCATGGGAGATTGTTTTATTTTCATTGAGATTCATAGCTTTTGCTTGAATGCAATGGATCAGTTATCTATTATCGTTATAAATTAATAATCACTCCAAATTAGGGTTTCT

mRNA sequence

ATGTCTACAGAAACGAATCAAGTTTGTTTCTGGGATCGTCGTATTTCACAGAGAGCACTTGCTGGAATAAAACGCATCAATTTGGAAGGTCTGAGGTGGAGAGTGTTTGACGCCAAAGGCCAGGTTCTTGGAAGATTGGCATCTCAAATATCTACCGTGATTCAAGGCAAGGATAAGCCAACATACGCACCAAATCGGGATGATGGGGATATGTGCATTGTGCTTAATGCTAAGGATATCTATGTCTCAGGAAGAAAGCCCAGTGATAAAATTTATTACTGGCATACTGGGTATGTCGGCCATGTCAAGGAAAGAAGTTTGAAAGATCAGATGGCCAAAGACCCTACCGAAGTCATACGTAAAGCTGTATTGCGCATGCTGCCACGAAATAAACTGCGTGATGATAGAGATCGAAAACTGAGAATTTTTGCTGGAGATGAACACCCATTTGGCGACCGACCACTCGAGCCATATATCATGCCACCTCGTAATGTAAGAGAGATGCGTCCACGTGCAAGACGAGCCATGATTCGAGCACAAAAAAAGGCAGAACAACAACAAAATAACGACAATCATTCAAAGAAAAATCGAAAGAAGGAAGAAAAGGTAGAAGAAGTGATTGCATAAACAGGACCTGATTTCTTCCATCCCAGTGGAGTTTGTTTGGATCATATAATCAGCCATGGCATAGCTGAAGTAGTCTGGAACTCATTTAGTTGCCTCAAAGCTGGCTTTAAATTTGGTTGTAGCTTGGATTTGATATCATTTGTAAAGTTATGATGTCATGTTTTCTTCAATGCCTGAATTTCCATGGGAGATTGTTTTATTTTCATTGAGATTCATAGCTTTTGCTTGAATGCAATGGATCAGTTATCTATTATCGTTATAAATTAATAATCACTCCAAATTAGGGTTTCT

Coding sequence (CDS)

ATGTCTACAGAAACGAATCAAGTTTGTTTCTGGGATCGTCGTATTTCACAGAGAGCACTTGCTGGAATAAAACGCATCAATTTGGAAGGTCTGAGGTGGAGAGTGTTTGACGCCAAAGGCCAGGTTCTTGGAAGATTGGCATCTCAAATATCTACCGTGATTCAAGGCAAGGATAAGCCAACATACGCACCAAATCGGGATGATGGGGATATGTGCATTGTGCTTAATGCTAAGGATATCTATGTCTCAGGAAGAAAGCCCAGTGATAAAATTTATTACTGGCATACTGGGTATGTCGGCCATGTCAAGGAAAGAAGTTTGAAAGATCAGATGGCCAAAGACCCTACCGAAGTCATACGTAAAGCTGTATTGCGCATGCTGCCACGAAATAAACTGCGTGATGATAGAGATCGAAAACTGAGAATTTTTGCTGGAGATGAACACCCATTTGGCGACCGACCACTCGAGCCATATATCATGCCACCTCGTAATGTAAGAGAGATGCGTCCACGTGCAAGACGAGCCATGATTCGAGCACAAAAAAAGGCAGAACAACAACAAAATAACGACAATCATTCAAAGAAAAATCGAAAGAAGGAAGAAAAGGTAGAAGAAGTGATTGCATAA

Protein sequence

MSTETNQVCFWDRRISQRALAGIKRINLEGLRWRVFDAKGQVLGRLASQISTVIQGKDKPTYAPNRDDGDMCIVLNAKDIYVSGRKPSDKIYYWHTGYVGHVKERSLKDQMAKDPTEVIRKAVLRMLPRNKLRDDRDRKLRIFAGDEHPFGDRPLEPYIMPPRNVREMRPRARRAMIRAQKKAEQQQNNDNHSKKNRKKEEKVEEVIA

Homology

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BLAST of Carg05258 vs. NCBI nr
Match: XP_022963327.1 (uncharacterized protein LOC111463568 [Cucurbita moschata])

HSP 1 Score: 379.4 bits (973), Expect = 2.0e-101
Identity = 191/192 (99.48%), Postives = 192/192 (100.00%), Query Frame = 0


Query: 17  QRALAGIKRINLEGLRWRVFDAKGQVLGRLASQISTVIQGKDKPTYAPNRDDGDMCIVLN 76
           +RALAGIKRINLEGLRWRVFDAKGQVLGRLASQISTVIQGKDKPTYAPNRDDGDMCIVLN
Sbjct: 14  KRALAGIKRINLEGLRWRVFDAKGQVLGRLASQISTVIQGKDKPTYAPNRDDGDMCIVLN 73

Query: 77  AKDIYVSGRKPSDKIYYWHTGYVGHVKERSLKDQMAKDPTEVIRKAVLRMLPRNKLRDDR 136
           AKDIYVSGRKPSDKIYYWHTGYVGHVKERSLKDQMAKDPTEVIRKAVLRMLPRNKLRDDR
Sbjct: 74  AKDIYVSGRKPSDKIYYWHTGYVGHVKERSLKDQMAKDPTEVIRKAVLRMLPRNKLRDDR 133

Query: 137 DRKLRIFAGDEHPFGDRPLEPYIMPPRNVREMRPRARRAMIRAQKKAEQQQNNDNHSKKN 196
           DRKLRIFAGDEHPFGDRPLEPYIMPPRNVREMRPRARRAMIRAQKKAEQQQNNDNHSKKN
Sbjct: 134 DRKLRIFAGDEHPFGDRPLEPYIMPPRNVREMRPRARRAMIRAQKKAEQQQNNDNHSKKN 193

Query: 197 RKKEEKVEEVIA 209
           RKKEEKVEEVIA
Sbjct: 194 RKKEEKVEEVIA 205

[Close]

BLAST of Carg05258 vs. NCBI nr
Match: KAG6595080.1 (hypothetical protein SDJN03_11633, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 378.3 bits (970), Expect = 4.4e-101
Identity = 190/192 (98.96%), Postives = 192/192 (100.00%), Query Frame = 0


Query: 17  QRALAGIKRINLEGLRWRVFDAKGQVLGRLASQISTVIQGKDKPTYAPNRDDGDMCIVLN 76
           +RALAGIKRINLEGLRWRVFDAKGQVLGRLASQISTVIQGKDKPTYAPNRDDGDMCIVLN
Sbjct: 2   KRALAGIKRINLEGLRWRVFDAKGQVLGRLASQISTVIQGKDKPTYAPNRDDGDMCIVLN 61

Query: 77  AKDIYVSGRKPSDKIYYWHTGYVGHVKERSLKDQMAKDPTEVIRKAVLRMLPRNKLRDDR 136
           AKDIYVSGRKP+DKIYYWHTGYVGHVKERSLKDQMAKDPTEVIRKAVLRMLPRNKLRDDR
Sbjct: 62  AKDIYVSGRKPNDKIYYWHTGYVGHVKERSLKDQMAKDPTEVIRKAVLRMLPRNKLRDDR 121

Query: 137 DRKLRIFAGDEHPFGDRPLEPYIMPPRNVREMRPRARRAMIRAQKKAEQQQNNDNHSKKN 196
           DRKLRIFAGDEHPFGDRPLEPYIMPPRNVREMRPRARRAMIRAQKKAEQQQNNDNHSKKN
Sbjct: 122 DRKLRIFAGDEHPFGDRPLEPYIMPPRNVREMRPRARRAMIRAQKKAEQQQNNDNHSKKN 181

Query: 197 RKKEEKVEEVIA 209
           RKKEEKVEEVIA
Sbjct: 182 RKKEEKVEEVIA 193

[Close]

BLAST of Carg05258 vs. NCBI nr
Match: XP_023518866.1 (uncharacterized protein LOC111782260 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 375.9 bits (964), Expect = 2.2e-100
Identity = 189/192 (98.44%), Postives = 191/192 (99.48%), Query Frame = 0


Query: 17  QRALAGIKRINLEGLRWRVFDAKGQVLGRLASQISTVIQGKDKPTYAPNRDDGDMCIVLN 76
           +RALAGIKRINLEGLRWRVFDAKGQVLGRLASQISTVIQGKDKPTYAPNRDDGDMCIVLN
Sbjct: 14  KRALAGIKRINLEGLRWRVFDAKGQVLGRLASQISTVIQGKDKPTYAPNRDDGDMCIVLN 73

Query: 77  AKDIYVSGRKPSDKIYYWHTGYVGHVKERSLKDQMAKDPTEVIRKAVLRMLPRNKLRDDR 136
           AKDIYVSGRKP+DKIYYWHTGYVGHVKERSLKDQMAKDPTEVIRKAVLRMLPRNKLRDDR
Sbjct: 74  AKDIYVSGRKPTDKIYYWHTGYVGHVKERSLKDQMAKDPTEVIRKAVLRMLPRNKLRDDR 133

Query: 137 DRKLRIFAGDEHPFGDRPLEPYIMPPRNVREMRPRARRAMIRAQKKAEQQQNNDNHSKKN 196
           DRKLRIFAGDEHPFGDRPLEPYIMPPRNVREMRPRARRAMIRAQKKAEQQQN DNHSKKN
Sbjct: 134 DRKLRIFAGDEHPFGDRPLEPYIMPPRNVREMRPRARRAMIRAQKKAEQQQNGDNHSKKN 193

Query: 197 RKKEEKVEEVIA 209
           RKKEEKVEEVIA
Sbjct: 194 RKKEEKVEEVIA 205

[Close]

BLAST of Carg05258 vs. NCBI nr
Match: XP_023003668.1 (uncharacterized protein LOC111497191 [Cucurbita maxima])

HSP 1 Score: 365.5 bits (937), Expect = 3.0e-97
Identity = 183/190 (96.32%), Postives = 189/190 (99.47%), Query Frame = 0


Query: 17  QRALAGIKRINLEGLRWRVFDAKGQVLGRLASQISTVIQGKDKPTYAPNRDDGDMCIVLN 76
           +RALAGIKRINLEGLRWRVFDAKGQVLGRLASQISTVIQGKDKPTYAPNRDDGDMCIVLN
Sbjct: 14  KRALAGIKRINLEGLRWRVFDAKGQVLGRLASQISTVIQGKDKPTYAPNRDDGDMCIVLN 73

Query: 77  AKDIYVSGRKPSDKIYYWHTGYVGHVKERSLKDQMAKDPTEVIRKAVLRMLPRNKLRDDR 136
           AKDIYVSGRKP+DKIYYWHTGYVG++KERSLKDQMAKDPTEVIRKAVLRMLPRNKLRDDR
Sbjct: 74  AKDIYVSGRKPTDKIYYWHTGYVGNLKERSLKDQMAKDPTEVIRKAVLRMLPRNKLRDDR 133

Query: 137 DRKLRIFAGDEHPFGDRPLEPYIMPPRNVREMRPRARRAMIRAQKKAEQQQNNDNHSKKN 196
           DRKLRIFAGDEHPFGDRPLEPYIMPPRNVREMRPRARRAMIRAQKKAEQQQN+DNHSKKN
Sbjct: 134 DRKLRIFAGDEHPFGDRPLEPYIMPPRNVREMRPRARRAMIRAQKKAEQQQNDDNHSKKN 193

Query: 197 RKKEEKVEEV 207
           RKKEEKVE +
Sbjct: 194 RKKEEKVEVI 203

[Close]

BLAST of Carg05258 vs. NCBI nr
Match: XP_038883187.1 (50S ribosomal protein L13 isoform X2 [Benincasa hispida])

HSP 1 Score: 335.1 bits (858), Expect = 4.3e-88
Identity = 167/191 (87.43%), Postives = 182/191 (95.29%), Query Frame = 0


Query: 16  SQRALAGIKRINLEGLRWRVFDAKGQVLGRLASQISTVIQGKDKPTYAPNRDDGDMCIVL 75
           +Q+ALAG++RINLEGLRWRVFDAKGQVLGRLASQISTVIQGKDKPTY PNRDDGDMCIVL
Sbjct: 33  TQKALAGLRRINLEGLRWRVFDAKGQVLGRLASQISTVIQGKDKPTYTPNRDDGDMCIVL 92

Query: 76  NAKDIYVSGRKPSDKIYYWHTGYVGHVKERSLKDQMAKDPTEVIRKAVLRMLPRNKLRDD 135
           NAKDI V+GRK +DK+YYWHTGYVG++KER+LKDQMAKDPTEVIRKAVLRMLP+NKLRDD
Sbjct: 93  NAKDIAVTGRKLTDKVYYWHTGYVGNLKERNLKDQMAKDPTEVIRKAVLRMLPKNKLRDD 152

Query: 136 RDRKLRIFAGDEHPFGDRPLEPYIMPPRNVREMRPRARRAMIRAQKKAEQQQNNDNHSKK 195
           RDRKLRIFAGDEHPFGDRPLEPYIMPPR VREMRP+ RRAMIRAQKKAEQQQN+ N  KK
Sbjct: 153 RDRKLRIFAGDEHPFGDRPLEPYIMPPRKVREMRPQVRRAMIRAQKKAEQQQNSANVVKK 212

Query: 196 NRKKEEKVEEV 207
           +RKKEEKVE +
Sbjct: 213 SRKKEEKVEVI 223

[Close]

BLAST of Carg05258 vs. ExPASy Swiss-Prot
Match: A9WH96 (50S ribosomal protein L13 OS=Chloroflexus aurantiacus (strain ATCC 29366 / DSM 635 / J-10-fl) OX=324602 GN=rplM PE=3 SV=1)

HSP 1 Score: 136.7 bits (343), Expect = 2.9e-31
Identity = 66/127 (51.97%), Postives = 87/127 (68.50%), Query Frame = 0


Query: 33  WRVFDAKGQVLGRLASQISTVIQGKDKPTYAPNRDDGDMCIVLNAKDIYVSGRKPSDKIY 92
           W V DA G+VLGRLA+QIST+++GK KPT+ P+ D GD  IV+NA+ I ++GRKP  KIY
Sbjct: 15  WYVIDASGKVLGRLATQISTLLRGKHKPTFTPSIDGGDFVIVVNAEKIVLTGRKPDQKIY 74

Query: 93  YWHTGYVGHVKERSLKDQMAKDPTEVIRKAVLRMLPRNKLRDDRDRKLRIFAGDEHPFGD 152
           Y HTGY G +K    K  +AK P  ++R AV RMLP+N++      KLRI+AG  HP   
Sbjct: 75  YRHTGYPGGIKATPYKMMLAKHPDRILRLAVKRMLPKNRMGRRLLSKLRIYAGPNHPHAA 134

Query: 153 RPLEPYI 160
           +  +PYI
Sbjct: 135 QQPKPYI 141

[Close]

BLAST of Carg05258 vs. ExPASy Swiss-Prot
Match: B9LJG2 (50S ribosomal protein L13 OS=Chloroflexus aurantiacus (strain ATCC 29364 / DSM 637 / Y-400-fl) OX=480224 GN=rplM PE=3 SV=1)

HSP 1 Score: 136.7 bits (343), Expect = 2.9e-31
Identity = 66/127 (51.97%), Postives = 87/127 (68.50%), Query Frame = 0


Query: 33  WRVFDAKGQVLGRLASQISTVIQGKDKPTYAPNRDDGDMCIVLNAKDIYVSGRKPSDKIY 92
           W V DA G+VLGRLA+QIST+++GK KPT+ P+ D GD  IV+NA+ I ++GRKP  KIY
Sbjct: 15  WYVIDASGKVLGRLATQISTLLRGKHKPTFTPSIDGGDFVIVVNAEKIVLTGRKPDQKIY 74

Query: 93  YWHTGYVGHVKERSLKDQMAKDPTEVIRKAVLRMLPRNKLRDDRDRKLRIFAGDEHPFGD 152
           Y HTGY G +K    K  +AK P  ++R AV RMLP+N++      KLRI+AG  HP   
Sbjct: 75  YRHTGYPGGIKATPYKMMLAKHPDRILRLAVKRMLPKNRMGRRLLSKLRIYAGPNHPHAA 134

Query: 153 RPLEPYI 160
           +  +PYI
Sbjct: 135 QQPKPYI 141

[Close]

BLAST of Carg05258 vs. ExPASy Swiss-Prot
Match: B8G6P5 (50S ribosomal protein L13 OS=Chloroflexus aggregans (strain MD-66 / DSM 9485) OX=326427 GN=rplM PE=3 SV=1)

HSP 1 Score: 136.0 bits (341), Expect = 5.0e-31
Identity = 66/127 (51.97%), Postives = 88/127 (69.29%), Query Frame = 0


Query: 33  WRVFDAKGQVLGRLASQISTVIQGKDKPTYAPNRDDGDMCIVLNAKDIYVSGRKPSDKIY 92
           W V DA G+VLGRLA+QIST+++GK KPT+ P+ D GD  IV+NA+ I ++GRKP  KIY
Sbjct: 15  WYVIDASGKVLGRLATQISTLLRGKHKPTFTPSIDGGDFVIVVNAEKIVLTGRKPEQKIY 74

Query: 93  YWHTGYVGHVKERSLKDQMAKDPTEVIRKAVLRMLPRNKLRDDRDRKLRIFAGDEHPFGD 152
           Y H+GY G +KE   K  +AK P  ++R AV RMLP+N++      KLRI+AG  HP   
Sbjct: 75  YRHSGYPGGLKEIPYKMMLAKHPERILRLAVKRMLPKNRMGRRLLSKLRIYAGPNHPHAA 134

Query: 153 RPLEPYI 160
           +  +PYI
Sbjct: 135 QQPKPYI 141

[Close]

BLAST of Carg05258 vs. ExPASy Swiss-Prot
Match: Q1AU63 (50S ribosomal protein L13 OS=Rubrobacter xylanophilus (strain DSM 9941 / NBRC 16129 / PRD-1) OX=266117 GN=rplM PE=3 SV=2)

HSP 1 Score: 134.8 bits (338), Expect = 1.1e-30
Identity = 60/127 (47.24%), Postives = 89/127 (70.08%), Query Frame = 0


Query: 32  RWRVFDAKGQVLGRLASQISTVIQGKDKPTYAPNRDDGDMCIVLNAKDIYVSGRKPSDKI 91
           +W V DA+G+ LGRLA++IS +++GK+KP Y P+ D GD  +V+NA  + V+GRK   K+
Sbjct: 14  KWYVIDAEGKTLGRLAAEISRLLRGKNKPQYTPHVDVGDFVVVVNADKVEVTGRKAEQKV 73

Query: 92  YYWHTGYVGHVKERSLKDQMAKDPTEVIRKAVLRMLPRNKLRDDRDRKLRIFAGDEHPFG 151
           Y WHTGY G ++ERS +  + K P E++R+AV  M+P+ +L   + +KLRI+AG EHP  
Sbjct: 74  YRWHTGYPGGLRERSYRQMLRKRPEEILRQAVRGMMPKTRLARRQLKKLRIYAGPEHPHA 133

Query: 152 DRPLEPY 159
            +  EPY
Sbjct: 134 GQTPEPY 140

[Close]

BLAST of Carg05258 vs. ExPASy Swiss-Prot
Match: Q18CJ1 (50S ribosomal protein L13 OS=Clostridioides difficile (strain 630) OX=272563 GN=rplM PE=3 SV=1)

HSP 1 Score: 130.2 bits (326), Expect = 2.7e-29
Identity = 62/117 (52.99%), Postives = 84/117 (71.79%), Query Frame = 0


Query: 32  RWRVFDAKGQVLGRLASQISTVIQGKDKPTYAPNRDDGDMCIVLNAKDIYVSGRKPSDKI 91
           +W + DA+G+ LGRLA++I+TV++GK KPT+ P+ D GD  +V+NA+ I +SG+K   K 
Sbjct: 14  KWYLVDAEGKTLGRLATEIATVLRGKHKPTFTPHVDGGDFVVVVNAEKIVLSGKKLDQKY 73

Query: 92  YYWHTGYVGHVKERSLKDQMAKDPTEVIRKAVLRMLPRNKLRDDRDRKLRIFAGDEH 149
           Y +HTGYVG +KE S +D M K P EVI  AV  MLP+NKLR     +LR+FAG EH
Sbjct: 74  YRYHTGYVGGLKEISYRDMMDKKPEEVISHAVSGMLPKNKLRSRMMTRLRVFAGAEH 130

[Close]

BLAST of Carg05258 vs. ExPASy TrEMBL
Match: A0A6J1HEZ9 (uncharacterized protein LOC111463568 OS=Cucurbita moschata OX=3662 GN=LOC111463568 PE=3 SV=1)

HSP 1 Score: 379.4 bits (973), Expect = 9.6e-102
Identity = 191/192 (99.48%), Postives = 192/192 (100.00%), Query Frame = 0


Query: 17  QRALAGIKRINLEGLRWRVFDAKGQVLGRLASQISTVIQGKDKPTYAPNRDDGDMCIVLN 76
           +RALAGIKRINLEGLRWRVFDAKGQVLGRLASQISTVIQGKDKPTYAPNRDDGDMCIVLN
Sbjct: 14  KRALAGIKRINLEGLRWRVFDAKGQVLGRLASQISTVIQGKDKPTYAPNRDDGDMCIVLN 73

Query: 77  AKDIYVSGRKPSDKIYYWHTGYVGHVKERSLKDQMAKDPTEVIRKAVLRMLPRNKLRDDR 136
           AKDIYVSGRKPSDKIYYWHTGYVGHVKERSLKDQMAKDPTEVIRKAVLRMLPRNKLRDDR
Sbjct: 74  AKDIYVSGRKPSDKIYYWHTGYVGHVKERSLKDQMAKDPTEVIRKAVLRMLPRNKLRDDR 133

Query: 137 DRKLRIFAGDEHPFGDRPLEPYIMPPRNVREMRPRARRAMIRAQKKAEQQQNNDNHSKKN 196
           DRKLRIFAGDEHPFGDRPLEPYIMPPRNVREMRPRARRAMIRAQKKAEQQQNNDNHSKKN
Sbjct: 134 DRKLRIFAGDEHPFGDRPLEPYIMPPRNVREMRPRARRAMIRAQKKAEQQQNNDNHSKKN 193

Query: 197 RKKEEKVEEVIA 209
           RKKEEKVEEVIA
Sbjct: 194 RKKEEKVEEVIA 205

[Close]

BLAST of Carg05258 vs. ExPASy TrEMBL
Match: A0A6J1KX97 (uncharacterized protein LOC111497191 OS=Cucurbita maxima OX=3661 GN=LOC111497191 PE=3 SV=1)

HSP 1 Score: 365.5 bits (937), Expect = 1.4e-97
Identity = 183/190 (96.32%), Postives = 189/190 (99.47%), Query Frame = 0


Query: 17  QRALAGIKRINLEGLRWRVFDAKGQVLGRLASQISTVIQGKDKPTYAPNRDDGDMCIVLN 76
           +RALAGIKRINLEGLRWRVFDAKGQVLGRLASQISTVIQGKDKPTYAPNRDDGDMCIVLN
Sbjct: 14  KRALAGIKRINLEGLRWRVFDAKGQVLGRLASQISTVIQGKDKPTYAPNRDDGDMCIVLN 73

Query: 77  AKDIYVSGRKPSDKIYYWHTGYVGHVKERSLKDQMAKDPTEVIRKAVLRMLPRNKLRDDR 136
           AKDIYVSGRKP+DKIYYWHTGYVG++KERSLKDQMAKDPTEVIRKAVLRMLPRNKLRDDR
Sbjct: 74  AKDIYVSGRKPTDKIYYWHTGYVGNLKERSLKDQMAKDPTEVIRKAVLRMLPRNKLRDDR 133

Query: 137 DRKLRIFAGDEHPFGDRPLEPYIMPPRNVREMRPRARRAMIRAQKKAEQQQNNDNHSKKN 196
           DRKLRIFAGDEHPFGDRPLEPYIMPPRNVREMRPRARRAMIRAQKKAEQQQN+DNHSKKN
Sbjct: 134 DRKLRIFAGDEHPFGDRPLEPYIMPPRNVREMRPRARRAMIRAQKKAEQQQNDDNHSKKN 193

Query: 197 RKKEEKVEEV 207
           RKKEEKVE +
Sbjct: 194 RKKEEKVEVI 203

[Close]

BLAST of Carg05258 vs. ExPASy TrEMBL
Match: A0A6J1CC45 (uncharacterized protein LOC111010318 OS=Momordica charantia OX=3673 GN=LOC111010318 PE=3 SV=1)

HSP 1 Score: 334.0 bits (855), Expect = 4.6e-88
Identity = 165/190 (86.84%), Postives = 182/190 (95.79%), Query Frame = 0


Query: 17  QRALAGIKRINLEGLRWRVFDAKGQVLGRLASQISTVIQGKDKPTYAPNRDDGDMCIVLN 76
           ++ALAG++RINLEGLRWRVFDAKGQVLGRLASQISTV+QGKDKPTYAPNRDDGDMCIVLN
Sbjct: 14  KKALAGLRRINLEGLRWRVFDAKGQVLGRLASQISTVVQGKDKPTYAPNRDDGDMCIVLN 73

Query: 77  AKDIYVSGRKPSDKIYYWHTGYVGHVKERSLKDQMAKDPTEVIRKAVLRMLPRNKLRDDR 136
           AKDI V+GRK +DK Y+WHTGYVG++KERSLKDQ+AKDPTEVIRKAVLRMLPRN+LRDDR
Sbjct: 74  AKDICVTGRKLTDKFYHWHTGYVGNLKERSLKDQLAKDPTEVIRKAVLRMLPRNELRDDR 133

Query: 137 DRKLRIFAGDEHPFGDRPLEPYIMPPRNVREMRPRARRAMIRAQKKAEQQQNNDNHSKKN 196
           DRKLRIFAGDEHPFGDRPLEPYIMPPRNVRE+RPR RRAMIRAQKKAEQQ N +N S+K+
Sbjct: 134 DRKLRIFAGDEHPFGDRPLEPYIMPPRNVRELRPRVRRAMIRAQKKAEQQTNGNNESRKS 193

Query: 197 RKKEEKVEEV 207
           RKKEEKVE +
Sbjct: 194 RKKEEKVEVI 203

[Close]

BLAST of Carg05258 vs. ExPASy TrEMBL
Match: A0A6J1BUX0 (uncharacterized protein LOC111005959 OS=Momordica charantia OX=3673 GN=LOC111005959 PE=3 SV=1)

HSP 1 Score: 333.6 bits (854), Expect = 6.0e-88
Identity = 165/190 (86.84%), Postives = 180/190 (94.74%), Query Frame = 0


Query: 17  QRALAGIKRINLEGLRWRVFDAKGQVLGRLASQISTVIQGKDKPTYAPNRDDGDMCIVLN 76
           ++ALAG++RINLEGLRWRVFDAKGQVLGRLASQISTV+QGKDKPTY PNRDDGDMCIVLN
Sbjct: 14  KKALAGLRRINLEGLRWRVFDAKGQVLGRLASQISTVVQGKDKPTYTPNRDDGDMCIVLN 73

Query: 77  AKDIYVSGRKPSDKIYYWHTGYVGHVKERSLKDQMAKDPTEVIRKAVLRMLPRNKLRDDR 136
           AKDI V+GRK +DK Y+WHTGYVG++KERSLKDQ+AKDPTEVIRKAVLRMLPRNKLRDDR
Sbjct: 74  AKDICVTGRKLTDKFYHWHTGYVGNLKERSLKDQLAKDPTEVIRKAVLRMLPRNKLRDDR 133

Query: 137 DRKLRIFAGDEHPFGDRPLEPYIMPPRNVREMRPRARRAMIRAQKKAEQQQNNDNHSKKN 196
           DRKLRIFAGDEHPFGDRPLEPYIMPPRNVRE+RPR RRAMIRAQKKAEQQ N  N S+K+
Sbjct: 134 DRKLRIFAGDEHPFGDRPLEPYIMPPRNVRELRPRVRRAMIRAQKKAEQQTNGSNESRKS 193

Query: 197 RKKEEKVEEV 207
           RKKEEKVE +
Sbjct: 194 RKKEEKVEVI 203

[Close]

BLAST of Carg05258 vs. ExPASy TrEMBL
Match: A0A0A0KL19 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G487720 PE=3 SV=1)

HSP 1 Score: 330.1 bits (845), Expect = 6.7e-87
Identity = 163/188 (86.70%), Postives = 179/188 (95.21%), Query Frame = 0


Query: 17  QRALAGIKRINLEGLRWRVFDAKGQVLGRLASQISTVIQGKDKPTYAPNRDDGDMCIVLN 76
           ++ALAG+KRINLEGLRWRVFDAKGQVLGRLASQISTVIQGKDKPTYAPNRDDGDMCIVLN
Sbjct: 14  KKALAGLKRINLEGLRWRVFDAKGQVLGRLASQISTVIQGKDKPTYAPNRDDGDMCIVLN 73

Query: 77  AKDIYVSGRKPSDKIYYWHTGYVGHVKERSLKDQMAKDPTEVIRKAVLRMLPRNKLRDDR 136
           AKDI V+GRK + K+YYWHTGYVG++KER+L++QM +DPTEVIRKAVLRMLP+NKLRDDR
Sbjct: 74  AKDIAVTGRKLTKKVYYWHTGYVGNLKERTLREQMTRDPTEVIRKAVLRMLPKNKLRDDR 133

Query: 137 DRKLRIFAGDEHPFGDRPLEPYIMPPRNVREMRPRARRAMIRAQKKAEQQQNNDNHSKKN 196
           DRKLRIFAGDEHPFGDRPLEPYIMPPRNVREMRP+ RRAMIRAQK AEQQQNN N  K++
Sbjct: 134 DRKLRIFAGDEHPFGDRPLEPYIMPPRNVREMRPQVRRAMIRAQKMAEQQQNNKNEGKES 193

Query: 197 RKKEEKVE 205
           RKKEEKVE
Sbjct: 194 RKKEEKVE 201

[Close]

BLAST of Carg05258 vs. TAIR 10
Match: AT3G01790.1 (Ribosomal protein L13 family protein )

HSP 1 Score: 297.4 bits (760), Expect = 9.2e-81
Identity = 145/183 (79.23%), Postives = 163/183 (89.07%), Query Frame = 0


Query: 17  QRALAGIKRINLEGLRWRVFDAKGQVLGRLASQISTVIQGKDKPTYAPNRDDGDMCIVLN 76
           ++A+AGIKRINL+GLRWRVFDA+GQVLGRLASQISTV+Q KDKPTY PNRDDGD+CIVLN
Sbjct: 16  KKAVAGIKRINLDGLRWRVFDARGQVLGRLASQISTVLQAKDKPTYCPNRDDGDICIVLN 75

Query: 77  AKDIYVSGRKPSDKIYYWHTGYVGHVKERSLKDQMAKDPTEVIRKAVLRMLPRNKLRDDR 136
           AK+I  +GRK +DK Y WHTGY+GH+KERSLKDQMAKDPTEVIRKAV RMLP N LRDDR
Sbjct: 76  AKEIGFTGRKLTDKFYRWHTGYIGHLKERSLKDQMAKDPTEVIRKAVWRMLPSNNLRDDR 135

Query: 137 DRKLRIFAGDEHPFGDRPLEPYIMPPRNVREMRPRARRAMIRAQKKAEQQQNNDNHSKKN 196
           DRKLRIF G EHPFGD+PLEP++MPPR VREMRPRARRAMIRAQKKAEQ +N     KK 
Sbjct: 136 DRKLRIFEGGEHPFGDKPLEPFVMPPRRVREMRPRARRAMIRAQKKAEQAENEGTEVKKG 195

Query: 197 RKK 200
           +K+
Sbjct: 196 KKR 198

[Close]

BLAST of Carg05258 vs. TAIR 10
Match: AT3G01790.2 (Ribosomal protein L13 family protein )

HSP 1 Score: 297.4 bits (760), Expect = 9.2e-81
Identity = 145/183 (79.23%), Postives = 163/183 (89.07%), Query Frame = 0


Query: 17  QRALAGIKRINLEGLRWRVFDAKGQVLGRLASQISTVIQGKDKPTYAPNRDDGDMCIVLN 76
           ++A+AGIKRINL+GLRWRVFDA+GQVLGRLASQISTV+Q KDKPTY PNRDDGD+CIVLN
Sbjct: 16  KKAVAGIKRINLDGLRWRVFDARGQVLGRLASQISTVLQAKDKPTYCPNRDDGDICIVLN 75

Query: 77  AKDIYVSGRKPSDKIYYWHTGYVGHVKERSLKDQMAKDPTEVIRKAVLRMLPRNKLRDDR 136
           AK+I  +GRK +DK Y WHTGY+GH+KERSLKDQMAKDPTEVIRKAV RMLP N LRDDR
Sbjct: 76  AKEIGFTGRKLTDKFYRWHTGYIGHLKERSLKDQMAKDPTEVIRKAVWRMLPSNNLRDDR 135

Query: 137 DRKLRIFAGDEHPFGDRPLEPYIMPPRNVREMRPRARRAMIRAQKKAEQQQNNDNHSKKN 196
           DRKLRIF G EHPFGD+PLEP++MPPR VREMRPRARRAMIRAQKKAEQ +N     KK 
Sbjct: 136 DRKLRIFEGGEHPFGDKPLEPFVMPPRRVREMRPRARRAMIRAQKKAEQAENEGTEVKKG 195

Query: 197 RKK 200
           +K+
Sbjct: 196 KKR 198

[Close]

BLAST of Carg05258 vs. TAIR 10
Match: AT1G78630.1 (Ribosomal protein L13 family protein )

HSP 1 Score: 84.0 bits (206), Expect = 1.6e-16
Identity = 47/135 (34.81%), Postives = 76/135 (56.30%), Query Frame = 0


Query: 33  WRVFDAKGQVLGRLASQISTVIQGKDKPTYAPNRDDGDMCIVLNAKDIYVSGRKPSDKIY 92
           W V DA  ++LGRLAS I+  I+GK+  +Y P+ D G   IV+NA+ + VSG+K + K+Y
Sbjct: 105 WFVVDATDKILGRLASTIANHIRGKNLASYTPSVDMGAFVIVVNAEKVAVSGKKRNQKLY 164

Query: 93  YWHTGYVGHVKERSLKDQMAKDPTEVIRKAVLRMLPRNKLRDDRDRKLRIFAGDEHPF-G 152
             H+G  G +   +      + P  ++  AV  MLP+ +L       L+++ G +HP   
Sbjct: 165 RRHSGRPGGMTVETFDQLQQRIPERIVEHAVRGMLPKGRLGRALFNHLKVYKGPDHPHEA 224

Query: 153 DRPLEPYIMPPRNVR 167
            +PL+   +P R+ R
Sbjct: 225 QKPLD---LPIRDKR 236

The following BLAST results are available for this feature:

BLAST of Carg05258 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022963327.1	2.0e-101	99.48	uncharacterized protein LOC111463568 [Cucurbita moschata]	[more]
KAG6595080.1	4.4e-101	98.96	hypothetical protein SDJN03_11633, partial [Cucurbita argyrosperma subsp. sorori...	[more]
XP_023518866.1	2.2e-100	98.44	uncharacterized protein LOC111782260 [Cucurbita pepo subsp. pepo]	[more]
XP_023003668.1	3.0e-97	96.32	uncharacterized protein LOC111497191 [Cucurbita maxima]	[more]
XP_038883187.1	4.3e-88	87.43	50S ribosomal protein L13 isoform X2 [Benincasa hispida]	[more]

BLAST of Carg05258 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
A9WH96	2.9e-31	51.97	50S ribosomal protein L13 OS=Chloroflexus aurantiacus (strain ATCC 29366 / DSM 6...	[more]
B9LJG2	2.9e-31	51.97	50S ribosomal protein L13 OS=Chloroflexus aurantiacus (strain ATCC 29364 / DSM 6...	[more]
B8G6P5	5.0e-31	51.97	50S ribosomal protein L13 OS=Chloroflexus aggregans (strain MD-66 / DSM 9485) OX...	[more]
Q1AU63	1.1e-30	47.24	50S ribosomal protein L13 OS=Rubrobacter xylanophilus (strain DSM 9941 / NBRC 16...	[more]
Q18CJ1	2.7e-29	52.99	50S ribosomal protein L13 OS=Clostridioides difficile (strain 630) OX=272563 GN=...	[more]

BLAST of Carg05258 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1HEZ9	9.6e-102	99.48	uncharacterized protein LOC111463568 OS=Cucurbita moschata OX=3662 GN=LOC1114635...	[more]
A0A6J1KX97	1.4e-97	96.32	uncharacterized protein LOC111497191 OS=Cucurbita maxima OX=3661 GN=LOC111497191...	[more]
A0A6J1CC45	4.6e-88	86.84	uncharacterized protein LOC111010318 OS=Momordica charantia OX=3673 GN=LOC111010...	[more]
A0A6J1BUX0	6.0e-88	86.84	uncharacterized protein LOC111005959 OS=Momordica charantia OX=3673 GN=LOC111005...	[more]
A0A0A0KL19	6.7e-87	86.70	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G487720 PE=3 SV=1	[more]

BLAST of Carg05258 vs. TAIR 10


Match Name	E-value	Identity	Description
AT3G01790.1	9.2e-81	79.23	Ribosomal protein L13 family protein	[more]
AT3G01790.2	9.2e-81	79.23	Ribosomal protein L13 family protein	[more]
AT1G78630.1	1.6e-16	34.81	Ribosomal protein L13 family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Silver-seed gourd (SMH-JMG-627) v2
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 182..202
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 174..208
None	No IPR available	PANTHER	PTHR11545:SF2	39S RIBOSOMAL PROTEIN L13, MITOCHONDRIAL	coord: 10..188
IPR005822	Ribosomal protein L13	PIRSF	PIRSF002181	RPL13p_RPL13Aa_RPL16e_RPL13o	coord: 17..203 e-value: 4.8E-50 score: 167.5
IPR005822	Ribosomal protein L13	PFAM	PF00572	Ribosomal_L13	coord: 32..149 e-value: 5.0E-43 score: 146.0
IPR005822	Ribosomal protein L13	PANTHER	PTHR11545	RIBOSOMAL PROTEIN L13	coord: 10..188
IPR005822	Ribosomal protein L13	HAMAP	MF_01366	Ribosomal_L13	coord: 33..156 score: 25.520824
IPR005822	Ribosomal protein L13	CDD	cd00392	Ribosomal_L13	coord: 33..146 e-value: 6.23284E-52 score: 161.133
IPR036899	Ribosomal protein L13 superfamily	GENE3D	3.90.1180.10	Ribosomal protein L13	coord: 29..167 e-value: 1.5E-57 score: 195.6
IPR036899	Ribosomal protein L13 superfamily	SUPERFAMILY	52161	Ribosomal protein L13	coord: 32..154
IPR005823	Ribosomal protein L13, bacterial-type	TIGRFAM	TIGR01066	TIGR01066	coord: 32..150 e-value: 1.8E-43 score: 145.7

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Carg05258-RA	Carg05258-RA	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0017148	negative regulation of translation
biological_process	GO:0006355	regulation of transcription, DNA-templated
biological_process	GO:0009725	response to hormone
biological_process	GO:0007062	sister chromatid cohesion
biological_process	GO:0006412	translation
cellular_component	GO:0008278	cohesin complex
cellular_component	GO:0016021	integral component of membrane
cellular_component	GO:0005762	mitochondrial large ribosomal subunit
cellular_component	GO:0005634	nucleus
cellular_component	GO:0005840	ribosome
molecular_function	GO:0003677	DNA binding
molecular_function	GO:0003729	mRNA binding
molecular_function	GO:0003735	structural constituent of ribosome