Carg05226 (gene) Silver-seed gourd (SMH-JMG-627) v2

Overview
NameCarg05226
Typegene
OrganismCucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
Descriptionprecursor of CEP5
LocationCarg_Chr07: 3620045 .. 3620356 (+)
RNA-Seq ExpressionCarg05226
SyntenyCarg05226
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGCTACCAACCAACCTAAGCCTTGCCTTTCTTTTCATTGCCCTTCTAATTTTCTCTCATTTTATAGATTCTGCCTCCAGCAGGCCACTCAAAACACACACAAATCACCAACTCTCTGCCAGGTCAGCAAAAGAGGCTCATTTCCAATTCCATGGCCAAAGTGTGGCGGAAGGAAAAGGAACAGATGGCGCTGTTTCTACTCCAAGCCCTCCCACCACAGCGGCGGGTTCGTCTCCGGGCCGGAAGATGGATGACTTCAGGCCAACCACCCCCGGCCATAGCCCAGGCGTTGGCCATTCCATTCAGAACTAA

mRNA sequence

ATGCTACCAACCAACCTAAGCCTTGCCTTTCTTTTCATTGCCCTTCTAATTTTCTCTCATTTTATAGATTCTGCCTCCAGCAGGCCACTCAAAACACACACAAATCACCAACTCTCTGCCAGGTCAGCAAAAGAGGCTCATTTCCAATTCCATGGCCAAAGTGTGGCGGAAGGAAAAGGAACAGATGGCGCTGTTTCTACTCCAAGCCCTCCCACCACAGCGGCGGGTTCGTCTCCGGGCCGGAAGATGGATGACTTCAGGCCAACCACCCCCGGCCATAGCCCAGGCGTTGGCCATTCCATTCAGAACTAA

Coding sequence (CDS)

ATGCTACCAACCAACCTAAGCCTTGCCTTTCTTTTCATTGCCCTTCTAATTTTCTCTCATTTTATAGATTCTGCCTCCAGCAGGCCACTCAAAACACACACAAATCACCAACTCTCTGCCAGGTCAGCAAAAGAGGCTCATTTCCAATTCCATGGCCAAAGTGTGGCGGAAGGAAAAGGAACAGATGGCGCTGTTTCTACTCCAAGCCCTCCCACCACAGCGGCGGGTTCGTCTCCGGGCCGGAAGATGGATGACTTCAGGCCAACCACCCCCGGCCATAGCCCAGGCGTTGGCCATTCCATTCAGAACTAA

Protein sequence

MLPTNLSLAFLFIALLIFSHFIDSASSRPLKTHTNHQLSARSAKEAHFQFHGQSVAEGKGTDGAVSTPSPPTTAAGSSPGRKMDDFRPTTPGHSPGVGHSIQN
Homology
BLAST of Carg05226 vs. NCBI nr
Match: KAG7027066.1 (Precursor of CEP3, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 201.4 bits (511), Expect = 3.7e-48
Identity = 103/103 (100.00%), Postives = 103/103 (100.00%), Query Frame = 0

Query: 1   MLPTNLSLAFLFIALLIFSHFIDSASSRPLKTHTNHQLSARSAKEAHFQFHGQSVAEGKG 60
           MLPTNLSLAFLFIALLIFSHFIDSASSRPLKTHTNHQLSARSAKEAHFQFHGQSVAEGKG
Sbjct: 1   MLPTNLSLAFLFIALLIFSHFIDSASSRPLKTHTNHQLSARSAKEAHFQFHGQSVAEGKG 60

Query: 61  TDGAVSTPSPPTTAAGSSPGRKMDDFRPTTPGHSPGVGHSIQN 104
           TDGAVSTPSPPTTAAGSSPGRKMDDFRPTTPGHSPGVGHSIQN
Sbjct: 61  TDGAVSTPSPPTTAAGSSPGRKMDDFRPTTPGHSPGVGHSIQN 103

BLAST of Carg05226 vs. NCBI nr
Match: KAG6595043.1 (Precursor of CEP3, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 198.7 bits (504), Expect = 2.4e-47
Identity = 102/103 (99.03%), Postives = 102/103 (99.03%), Query Frame = 0

Query: 1   MLPTNLSLAFLFIALLIFSHFIDSASSRPLKTHTNHQLSARSAKEAHFQFHGQSVAEGKG 60
           M PTNLSLAFLFIALLIFSHFIDSASSRPLKTHTNHQLSARSAKEAHFQFHGQSVAEGKG
Sbjct: 1   MPPTNLSLAFLFIALLIFSHFIDSASSRPLKTHTNHQLSARSAKEAHFQFHGQSVAEGKG 60

Query: 61  TDGAVSTPSPPTTAAGSSPGRKMDDFRPTTPGHSPGVGHSIQN 104
           TDGAVSTPSPPTTAAGSSPGRKMDDFRPTTPGHSPGVGHSIQN
Sbjct: 61  TDGAVSTPSPPTTAAGSSPGRKMDDFRPTTPGHSPGVGHSIQN 103

BLAST of Carg05226 vs. NCBI nr
Match: KAG6604187.1 (hypothetical protein SDJN03_04796, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 128.3 bits (321), Expect = 3.9e-26
Identity = 70/104 (67.31%), Postives = 78/104 (75.00%), Query Frame = 0

Query: 1   MLPTNLSLAFLFIALLIFSHFIDSASSRPLKTHTNHQLSARSAKEAHFQFHGQSVAEGKG 60
           M PT LS AFLF AL++  +  +S  SRPLKT TNHQL  R AK+ HFQFHG+SV EG G
Sbjct: 1   MAPTKLSFAFLFTALIVLCYVTESVLSRPLKTDTNHQLFERPAKDGHFQFHGESVEEGNG 60

Query: 61  TDGAVSTPSPPT-TAAGSSPGRKMDDFRPTTPGHSPGVGHSIQN 104
           T    + P+P T  AA SSPGRKMDDFRPTTPGHSPGVGHSIQN
Sbjct: 61  T----TNPNPLTAAAAASSPGRKMDDFRPTTPGHSPGVGHSIQN 100

BLAST of Carg05226 vs. NCBI nr
Match: KGN48516.1 (hypothetical protein Csa_002724 [Cucumis sativus])

HSP 1 Score: 127.9 bits (320), Expect = 5.1e-26
Identity = 72/107 (67.29%), Postives = 81/107 (75.70%), Query Frame = 0

Query: 1   MLPTNLSLAFLFIALLIFSHFIDSASSRPLKTHTNH-QLSARSAKEAHFQFHGQSVAEGK 60
           M PT LS AFLFI+LLI  H +D A SRPL THT H QLS    K  HFQ HGQ++ EGK
Sbjct: 5   MAPTKLSFAFLFISLLILCHLVDPAFSRPLTTHTIHQQLSDTLPKNPHFQLHGQTLHEGK 64

Query: 61  GT-DGAVST--PSPPTTAAGSSPGRKMDDFRPTTPGHSPGVGHSIQN 104
            + D AVST  P+PP+ AA S+PGRKMDDFRPTTPGHSPGVGHSI+N
Sbjct: 65  ASNDDAVSTPNPNPPSAAASSTPGRKMDDFRPTTPGHSPGVGHSIEN 111

BLAST of Carg05226 vs. NCBI nr
Match: TYK12897.1 (hypothetical protein E5676_scaffold255G004910 [Cucumis melo var. makuwa])

HSP 1 Score: 127.9 bits (320), Expect = 5.1e-26
Identity = 73/107 (68.22%), Postives = 81/107 (75.70%), Query Frame = 0

Query: 1   MLPTNLSLAFLFIALLIFSHFIDSASSRPLKTHTNH-QLSARSAKEAHFQFHGQSVAEGK 60
           M  T LS AFLFI+LLI  H ID A SRPL THT+H QLS       HFQFHG +V EGK
Sbjct: 1   MASTKLSFAFLFISLLILCHLIDPAFSRPLTTHTDHQQLSNTLPTNPHFQFHGHTVHEGK 60

Query: 61  GTDG-AVST--PSPPTTAAGSSPGRKMDDFRPTTPGHSPGVGHSIQN 104
            ++  AVST  P+PPT AAGS+PGRKMDDFRPTTPGHSPGVGHSI+N
Sbjct: 61  ASNNDAVSTPNPNPPTAAAGSTPGRKMDDFRPTTPGHSPGVGHSIKN 107

BLAST of Carg05226 vs. ExPASy Swiss-Prot
Match: O80460 (Precursor of CEP3 OS=Arabidopsis thaliana OX=3702 GN=CEP3 PE=1 SV=1)

HSP 1 Score: 50.8 bits (120), Expect = 1.0e-05
Identity = 23/41 (56.10%), Postives = 28/41 (68.29%), Query Frame = 0

Query: 63  GAVSTPSPPTTAAGSSPGRKMDDFRPTTPGHSPGVGHSIQN 104
           G+V + SPPT    S P   +D FRPT PGHSPG+GHS+ N
Sbjct: 42  GSVLSSSPPTEPLESPPSHGVDTFRPTEPGHSPGIGHSVHN 82

BLAST of Carg05226 vs. ExPASy Swiss-Prot
Match: Q058G9 (Precursor of CEP5 OS=Arabidopsis thaliana OX=3702 GN=CEP5 PE=1 SV=1)

HSP 1 Score: 48.1 bits (113), Expect = 6.8e-05
Identity = 20/37 (54.05%), Postives = 26/37 (70.27%), Query Frame = 0

Query: 67  TPSPPTTAAGSSPGRKMDDFRPTTPGHSPGVGHSIQN 104
           +P PP      S G+  +DFRPTTPGHSPG+GHS+ +
Sbjct: 68  SPPPPPPPPSQSGGKDAEDFRPTTPGHSPGIGHSLSH 104

BLAST of Carg05226 vs. ExPASy Swiss-Prot
Match: A0A1I9LMX5 (Precursor of CEP9 OS=Arabidopsis thaliana OX=3702 GN=CEP9 PE=1 SV=1)

HSP 1 Score: 48.1 bits (113), Expect = 6.8e-05
Identity = 24/41 (58.54%), Postives = 30/41 (73.17%), Query Frame = 0

Query: 66  STPSPPTTAAGSSPG---RKMDDFRPTTPGHSPGVGHSIQN 104
           ST     T  G+SPG   +K DDF+PTTPGHSPGVGH+++N
Sbjct: 198 STDDFAPTTPGNSPGMGHKKGDDFKPTTPGHSPGVGHAVKN 238

BLAST of Carg05226 vs. ExPASy TrEMBL
Match: A0A5D3CLS2 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold255G004910 PE=3 SV=1)

HSP 1 Score: 127.9 bits (320), Expect = 2.5e-26
Identity = 73/107 (68.22%), Postives = 81/107 (75.70%), Query Frame = 0

Query: 1   MLPTNLSLAFLFIALLIFSHFIDSASSRPLKTHTNH-QLSARSAKEAHFQFHGQSVAEGK 60
           M  T LS AFLFI+LLI  H ID A SRPL THT+H QLS       HFQFHG +V EGK
Sbjct: 1   MASTKLSFAFLFISLLILCHLIDPAFSRPLTTHTDHQQLSNTLPTNPHFQFHGHTVHEGK 60

Query: 61  GTDG-AVST--PSPPTTAAGSSPGRKMDDFRPTTPGHSPGVGHSIQN 104
            ++  AVST  P+PPT AAGS+PGRKMDDFRPTTPGHSPGVGHSI+N
Sbjct: 61  ASNNDAVSTPNPNPPTAAAGSTPGRKMDDFRPTTPGHSPGVGHSIKN 107

BLAST of Carg05226 vs. ExPASy TrEMBL
Match: A0A0A0KLC0 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G490800 PE=3 SV=1)

HSP 1 Score: 127.9 bits (320), Expect = 2.5e-26
Identity = 72/107 (67.29%), Postives = 81/107 (75.70%), Query Frame = 0

Query: 1   MLPTNLSLAFLFIALLIFSHFIDSASSRPLKTHTNH-QLSARSAKEAHFQFHGQSVAEGK 60
           M PT LS AFLFI+LLI  H +D A SRPL THT H QLS    K  HFQ HGQ++ EGK
Sbjct: 5   MAPTKLSFAFLFISLLILCHLVDPAFSRPLTTHTIHQQLSDTLPKNPHFQLHGQTLHEGK 64

Query: 61  GT-DGAVST--PSPPTTAAGSSPGRKMDDFRPTTPGHSPGVGHSIQN 104
            + D AVST  P+PP+ AA S+PGRKMDDFRPTTPGHSPGVGHSI+N
Sbjct: 65  ASNDDAVSTPNPNPPSAAASSTPGRKMDDFRPTTPGHSPGVGHSIEN 111

BLAST of Carg05226 vs. ExPASy TrEMBL
Match: A0A5N5M0E1 (Uncharacterized protein OS=Salix brachista OX=2182728 GN=DKX38_011197 PE=3 SV=1)

HSP 1 Score: 66.6 bits (161), Expect = 6.8e-08
Identity = 45/109 (41.28%), Postives = 58/109 (53.21%), Query Frame = 0

Query: 1   MLPTNLSLAFLFIALLIFSHFIDSASSRPLKTHTNHQL---SARSAKEAHFQFHGQSVAE 60
           M  +NL   F+F  L+IFSH       R LK  T+++      R   E + + H     +
Sbjct: 1   MAQSNLLKTFVFFVLIIFSHEFLFIEGRHLKLKTSNRFLENETRKLAENNSRSHVNDSLD 60

Query: 61  GKGTDGAVSTPSPPTTAAGS---SPGRKMDDFRPTTPGHSPGVGHSIQN 104
                  VS P+PPT  AG    SP  ++DDFRPT PGHSPGVGHS+QN
Sbjct: 61  KPVDATKVSPPAPPTPVAGDPQPSPRGRVDDFRPTAPGHSPGVGHSLQN 109

BLAST of Carg05226 vs. ExPASy TrEMBL
Match: A0A059AMU0 (Uncharacterized protein OS=Eucalyptus grandis OX=71139 GN=EUGRSUZ_I00950 PE=3 SV=1)

HSP 1 Score: 62.8 bits (151), Expect = 9.8e-07
Identity = 49/125 (39.20%), Postives = 63/125 (50.40%), Query Frame = 0

Query: 1   MLPTNLSLAFLFIALLIFSHFIDSASSRPLK-------------THTNHQLSARSAK--- 60
           M    + +AFLF+ L+ F   + S  +R LK              H N  L     K   
Sbjct: 1   MAQNRVLVAFLFL-LVAFCLKLRSTQARQLKLTSQEQNPFPNELRHVNKLLGKEPRKTIA 60

Query: 61  EAHFQFHGQSVAEGKGTDGAVS-TPSPPTTAAGS-----SPGRKMDDFRPTTPGHSPGVG 104
           E    + G+++ E   TD + S  PSPPT   G+     SPGR +DDFRPT PGHSPGVG
Sbjct: 61  EQSKNWRGETLNEATNTDASSSPPPSPPTAMVGATTPPPSPGRSLDDFRPTAPGHSPGVG 120

BLAST of Carg05226 vs. ExPASy TrEMBL
Match: A0A4D6LRW0 (Uncharacterized protein OS=Vigna unguiculata OX=3917 GN=DEO72_LG4g2282 PE=3 SV=1)

HSP 1 Score: 61.6 bits (148), Expect = 2.2e-06
Identity = 42/105 (40.00%), Postives = 56/105 (53.33%), Query Frame = 0

Query: 1   MLPTNLSLAFLFIALLIFSHFIDSASSRPLKTH--TNHQLSARSAKEAHFQFHGQSVAEG 60
           M    L++  + +AL+I    ++S   R LK    T HQ+  R        F        
Sbjct: 1   MAQKKLTVCLMLVALVILLQGLESIEGRLLKLDETTEHQMQERIPTTNVAAF-------- 60

Query: 61  KGTDGAVSTPSPPTTAAGSSPGRKMDDFRPTTPGHSPGVGHSIQN 104
             TD +VS P+PP+ AA   PGR +D+FRPT PGHSPGVGHS+ N
Sbjct: 61  -DTDVSVSPPTPPSAAA---PGRDVDNFRPTAPGHSPGVGHSVHN 93

BLAST of Carg05226 vs. TAIR 10
Match: AT2G23440.1 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: root; Has 25 Blast hits to 25 proteins in 6 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 25; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 50.8 bits (120), Expect = 7.4e-07
Identity = 23/41 (56.10%), Postives = 28/41 (68.29%), Query Frame = 0

Query: 63  GAVSTPSPPTTAAGSSPGRKMDDFRPTTPGHSPGVGHSIQN 104
           G+V + SPPT    S P   +D FRPT PGHSPG+GHS+ N
Sbjct: 42  GSVLSSSPPTEPLESPPSHGVDTFRPTEPGHSPGIGHSVHN 82

BLAST of Carg05226 vs. TAIR 10
Match: AT3G50610.1 (unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G66816.1); Has 125 Blast hits to 60 proteins in 16 species: Archae - 0; Bacteria - 2; Metazoa - 10; Fungi - 4; Plants - 97; Viruses - 0; Other Eukaryotes - 12 (source: NCBI BLink). )

HSP 1 Score: 48.1 bits (113), Expect = 4.8e-06
Identity = 24/41 (58.54%), Postives = 30/41 (73.17%), Query Frame = 0

Query: 66  STPSPPTTAAGSSPG---RKMDDFRPTTPGHSPGVGHSIQN 104
           ST     T  G+SPG   +K DDF+PTTPGHSPGVGH+++N
Sbjct: 184 STDDFAPTTPGNSPGMGHKKGDDFKPTTPGHSPGVGHAVKN 224

BLAST of Carg05226 vs. TAIR 10
Match: AT5G66815.1 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: root; Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). )

HSP 1 Score: 48.1 bits (113), Expect = 4.8e-06
Identity = 20/37 (54.05%), Postives = 26/37 (70.27%), Query Frame = 0

Query: 67  TPSPPTTAAGSSPGRKMDDFRPTTPGHSPGVGHSIQN 104
           +P PP      S G+  +DFRPTTPGHSPG+GHS+ +
Sbjct: 68  SPPPPPPPPSQSGGKDAEDFRPTTPGHSPGIGHSLSH 104

BLAST of Carg05226 vs. TAIR 10
Match: AT5G66816.1 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G50610.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). )

HSP 1 Score: 42.7 bits (99), Expect = 2.0e-04
Identity = 23/44 (52.27%), Postives = 28/44 (63.64%), Query Frame = 0

Query: 73  TAAGSSP--GRKM-----------DDFRPTTPGHSPGVGHSIQN 104
           T+ G+SP  G KM           DDF PTTPGHSPGVGH+++N
Sbjct: 53  TSPGNSPGIGHKMKENEENAGGYKDDFEPTTPGHSPGVGHAVKN 96

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
KAG7027066.13.7e-48100.00Precursor of CEP3, partial [Cucurbita argyrosperma subsp. argyrosperma][more]
KAG6595043.12.4e-4799.03Precursor of CEP3, partial [Cucurbita argyrosperma subsp. sororia][more]
KAG6604187.13.9e-2667.31hypothetical protein SDJN03_04796, partial [Cucurbita argyrosperma subsp. sorori... [more]
KGN48516.15.1e-2667.29hypothetical protein Csa_002724 [Cucumis sativus][more]
TYK12897.15.1e-2668.22hypothetical protein E5676_scaffold255G004910 [Cucumis melo var. makuwa][more]
Match NameE-valueIdentityDescription
O804601.0e-0556.10Precursor of CEP3 OS=Arabidopsis thaliana OX=3702 GN=CEP3 PE=1 SV=1[more]
Q058G96.8e-0554.05Precursor of CEP5 OS=Arabidopsis thaliana OX=3702 GN=CEP5 PE=1 SV=1[more]
A0A1I9LMX56.8e-0558.54Precursor of CEP9 OS=Arabidopsis thaliana OX=3702 GN=CEP9 PE=1 SV=1[more]
Match NameE-valueIdentityDescription
A0A5D3CLS22.5e-2668.22Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... [more]
A0A0A0KLC02.5e-2667.29Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G490800 PE=3 SV=1[more]
A0A5N5M0E16.8e-0841.28Uncharacterized protein OS=Salix brachista OX=2182728 GN=DKX38_011197 PE=3 SV=1[more]
A0A059AMU09.8e-0739.20Uncharacterized protein OS=Eucalyptus grandis OX=71139 GN=EUGRSUZ_I00950 PE=3 SV... [more]
A0A4D6LRW02.2e-0640.00Uncharacterized protein OS=Vigna unguiculata OX=3917 GN=DEO72_LG4g2282 PE=3 SV=1[more]
Match NameE-valueIdentityDescription
AT2G23440.17.4e-0756.10unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biologic... [more]
AT3G50610.14.8e-0658.54unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TA... [more]
AT5G66815.14.8e-0654.05unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biologic... [more]
AT5G66816.12.0e-0452.27unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biologic... [more]
InterPro
Analysis Name: InterPro Annotations of Silver-seed gourd (SMH-JMG-627) v2
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 54..103
NoneNo IPR availablePANTHERPTHR33348:SF28PRECURSOR OF CEP7coord: 4..103
IPR033250C-terminally encoded peptidePANTHERPTHR33348PRECURSOR OF CEP5coord: 4..103

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Carg05226-RACarg05226-RAmRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:1902025 nitrate import
biological_process GO:1901371 regulation of leaf morphogenesis
biological_process GO:2000280 regulation of root development
biological_process GO:0048364 root development
cellular_component GO:0005576 extracellular region
molecular_function GO:0005179 hormone activity