Carg05226 (gene) Silver-seed gourd (SMH-JMG-627) v2
Overview
Sequences
The following sequences are available for this feature:
Legend: exonCDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.ATGCTACCAACCAACCTAAGCCTTGCCTTTCTTTTCATTGCCCTTCTAATTTTCTCTCATTTTATAGATTCTGCCTCCAGCAGGCCACTCAAAACACACACAAATCACCAACTCTCTGCCAGGTCAGCAAAAGAGGCTCATTTCCAATTCCATGGCCAAAGTGTGGCGGAAGGAAAAGGAACAGATGGCGCTGTTTCTACTCCAAGCCCTCCCACCACAGCGGCGGGTTCGTCTCCGGGCCGGAAGATGGATGACTTCAGGCCAACCACCCCCGGCCATAGCCCAGGCGTTGGCCATTCCATTCAGAACTAA ATGCTACCAACCAACCTAAGCCTTGCCTTTCTTTTCATTGCCCTTCTAATTTTCTCTCATTTTATAGATTCTGCCTCCAGCAGGCCACTCAAAACACACACAAATCACCAACTCTCTGCCAGGTCAGCAAAAGAGGCTCATTTCCAATTCCATGGCCAAAGTGTGGCGGAAGGAAAAGGAACAGATGGCGCTGTTTCTACTCCAAGCCCTCCCACCACAGCGGCGGGTTCGTCTCCGGGCCGGAAGATGGATGACTTCAGGCCAACCACCCCCGGCCATAGCCCAGGCGTTGGCCATTCCATTCAGAACTAA ATGCTACCAACCAACCTAAGCCTTGCCTTTCTTTTCATTGCCCTTCTAATTTTCTCTCATTTTATAGATTCTGCCTCCAGCAGGCCACTCAAAACACACACAAATCACCAACTCTCTGCCAGGTCAGCAAAAGAGGCTCATTTCCAATTCCATGGCCAAAGTGTGGCGGAAGGAAAAGGAACAGATGGCGCTGTTTCTACTCCAAGCCCTCCCACCACAGCGGCGGGTTCGTCTCCGGGCCGGAAGATGGATGACTTCAGGCCAACCACCCCCGGCCATAGCCCAGGCGTTGGCCATTCCATTCAGAACTAA MLPTNLSLAFLFIALLIFSHFIDSASSRPLKTHTNHQLSARSAKEAHFQFHGQSVAEGKGTDGAVSTPSPPTTAAGSSPGRKMDDFRPTTPGHSPGVGHSIQN Homology
BLAST of Carg05226 vs. NCBI nr
Match: KAG7027066.1 (Precursor of CEP3, partial [Cucurbita argyrosperma subsp. argyrosperma]) HSP 1 Score: 201.4 bits (511), Expect = 3.7e-48 Identity = 103/103 (100.00%), Postives = 103/103 (100.00%), Query Frame = 0
BLAST of Carg05226 vs. NCBI nr
Match: KAG6595043.1 (Precursor of CEP3, partial [Cucurbita argyrosperma subsp. sororia]) HSP 1 Score: 198.7 bits (504), Expect = 2.4e-47 Identity = 102/103 (99.03%), Postives = 102/103 (99.03%), Query Frame = 0
BLAST of Carg05226 vs. NCBI nr
Match: KAG6604187.1 (hypothetical protein SDJN03_04796, partial [Cucurbita argyrosperma subsp. sororia]) HSP 1 Score: 128.3 bits (321), Expect = 3.9e-26 Identity = 70/104 (67.31%), Postives = 78/104 (75.00%), Query Frame = 0
BLAST of Carg05226 vs. NCBI nr
Match: KGN48516.1 (hypothetical protein Csa_002724 [Cucumis sativus]) HSP 1 Score: 127.9 bits (320), Expect = 5.1e-26 Identity = 72/107 (67.29%), Postives = 81/107 (75.70%), Query Frame = 0
BLAST of Carg05226 vs. NCBI nr
Match: TYK12897.1 (hypothetical protein E5676_scaffold255G004910 [Cucumis melo var. makuwa]) HSP 1 Score: 127.9 bits (320), Expect = 5.1e-26 Identity = 73/107 (68.22%), Postives = 81/107 (75.70%), Query Frame = 0
BLAST of Carg05226 vs. ExPASy Swiss-Prot
Match: O80460 (Precursor of CEP3 OS=Arabidopsis thaliana OX=3702 GN=CEP3 PE=1 SV=1) HSP 1 Score: 50.8 bits (120), Expect = 1.0e-05 Identity = 23/41 (56.10%), Postives = 28/41 (68.29%), Query Frame = 0
BLAST of Carg05226 vs. ExPASy Swiss-Prot
Match: Q058G9 (Precursor of CEP5 OS=Arabidopsis thaliana OX=3702 GN=CEP5 PE=1 SV=1) HSP 1 Score: 48.1 bits (113), Expect = 6.8e-05 Identity = 20/37 (54.05%), Postives = 26/37 (70.27%), Query Frame = 0
BLAST of Carg05226 vs. ExPASy Swiss-Prot
Match: A0A1I9LMX5 (Precursor of CEP9 OS=Arabidopsis thaliana OX=3702 GN=CEP9 PE=1 SV=1) HSP 1 Score: 48.1 bits (113), Expect = 6.8e-05 Identity = 24/41 (58.54%), Postives = 30/41 (73.17%), Query Frame = 0
BLAST of Carg05226 vs. ExPASy TrEMBL
Match: A0A5D3CLS2 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold255G004910 PE=3 SV=1) HSP 1 Score: 127.9 bits (320), Expect = 2.5e-26 Identity = 73/107 (68.22%), Postives = 81/107 (75.70%), Query Frame = 0
BLAST of Carg05226 vs. ExPASy TrEMBL
Match: A0A0A0KLC0 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G490800 PE=3 SV=1) HSP 1 Score: 127.9 bits (320), Expect = 2.5e-26 Identity = 72/107 (67.29%), Postives = 81/107 (75.70%), Query Frame = 0
BLAST of Carg05226 vs. ExPASy TrEMBL
Match: A0A5N5M0E1 (Uncharacterized protein OS=Salix brachista OX=2182728 GN=DKX38_011197 PE=3 SV=1) HSP 1 Score: 66.6 bits (161), Expect = 6.8e-08 Identity = 45/109 (41.28%), Postives = 58/109 (53.21%), Query Frame = 0
BLAST of Carg05226 vs. ExPASy TrEMBL
Match: A0A059AMU0 (Uncharacterized protein OS=Eucalyptus grandis OX=71139 GN=EUGRSUZ_I00950 PE=3 SV=1) HSP 1 Score: 62.8 bits (151), Expect = 9.8e-07 Identity = 49/125 (39.20%), Postives = 63/125 (50.40%), Query Frame = 0
BLAST of Carg05226 vs. ExPASy TrEMBL
Match: A0A4D6LRW0 (Uncharacterized protein OS=Vigna unguiculata OX=3917 GN=DEO72_LG4g2282 PE=3 SV=1) HSP 1 Score: 61.6 bits (148), Expect = 2.2e-06 Identity = 42/105 (40.00%), Postives = 56/105 (53.33%), Query Frame = 0
BLAST of Carg05226 vs. TAIR 10
Match: AT2G23440.1 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: root; Has 25 Blast hits to 25 proteins in 6 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 25; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). ) HSP 1 Score: 50.8 bits (120), Expect = 7.4e-07 Identity = 23/41 (56.10%), Postives = 28/41 (68.29%), Query Frame = 0
BLAST of Carg05226 vs. TAIR 10
Match: AT3G50610.1 (unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G66816.1); Has 125 Blast hits to 60 proteins in 16 species: Archae - 0; Bacteria - 2; Metazoa - 10; Fungi - 4; Plants - 97; Viruses - 0; Other Eukaryotes - 12 (source: NCBI BLink). ) HSP 1 Score: 48.1 bits (113), Expect = 4.8e-06 Identity = 24/41 (58.54%), Postives = 30/41 (73.17%), Query Frame = 0
BLAST of Carg05226 vs. TAIR 10
Match: AT5G66815.1 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: root; Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). ) HSP 1 Score: 48.1 bits (113), Expect = 4.8e-06 Identity = 20/37 (54.05%), Postives = 26/37 (70.27%), Query Frame = 0
BLAST of Carg05226 vs. TAIR 10
Match: AT5G66816.1 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G50610.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). ) HSP 1 Score: 42.7 bits (99), Expect = 2.0e-04 Identity = 23/44 (52.27%), Postives = 28/44 (63.64%), Query Frame = 0
The following BLAST results are available for this feature:
InterPro
Analysis Name: InterPro Annotations of Silver-seed gourd (SMH-JMG-627) v2
Date Performed: 2021-10-25
Relationships
The following mRNA feature(s) are a part of this gene:
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
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