Carg05174 (gene) Silver-seed gourd (SMH-JMG-627) v2

Overview
NameCarg05174
Typegene
OrganismCucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
DescriptionUnknown protein
LocationCarg_Chr07: 3324369 .. 3325140 (+)
RNA-Seq ExpressionCarg05174
SyntenyCarg05174
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
TCTGCAAATGGACAAACTAAGACGGATTCTTGTCTGCATAAGGAGTATCAGTTATTTTTGTTGTGTTCTTGCTTTCGGCTGACTTACTCTGTCCCTGTGAACAGCAATACTGATAAAGTGACCACCAATGCACACTCGCAGGGGAAAAGATTCCTTGCTGAGAAGGTTAGAGATCACAATCTCTACGTGCATGCTCTGAAAAATTCATGAAACTTATCTCGACATTTTTTCCAATTACAGGGAAATTGAGTAATAAAAGAGTAAATAATGAATCAGCCAAACAAAGTCAGGGGAGTATCAGTTCAGGGAAGACGTCAATTTTGTAAGATTCTATCCAGCACTTTGTTGTTTTCTGTTGCCATCTTTCTACGCCATTACAGATCTGTAAGTTATCTTTCAGGAAATCATCTACCATGAAACTGGATCCGGAAGGTTAAAATCAACAACCAGATCCCAGAAGAAAAAATTGACCAGGAATAATGATCAAGCTGGGCTATGTTAGTTCAGATGATGATATCGACATTATACCCACCCGATAACTCAACGTTTGAGCTTTAATTCTTACAAGTGCAAATTCCCATCAATTCTTGATGCTTATGCCTACAACCCTATGATACAAGATGATGGAATTGGTTTAAAAGAAGAATACAAGCAAGGCTCTAGAAGTATGGAGACTAATTAATACTCATGGCTCACTGTGATTTCAGAAATCAAAGCAAGAGAAGCGAGAACAGACGTGGAATTGATTCCTGGACTACTGGAGCAACAATAG

mRNA sequence

TCTGCAAATGGACAAACTAAGACGGATTCTTGTCTGCATAAGGAGTATCAGTTATTTTTGTTGTGTTCTTGCTTTCGGCTGACTTACTCTGTCCCTGTGAACAGCAATACTGATAAAGTGACCACCAATGCACACTCGCAGGGGAAAAGATTCCTTGCTGAGAAGATCTGTAAGTTATCTTTCAGGAAATCATCTACCATGAAACTGGATCCGGAAGAAATCAAAGCAAGAGAAGCGAGAACAGACGTGGAATTGATTCCTGGACTACTGGAGCAACAATAG

Coding sequence (CDS)

TCTGCAAATGGACAAACTAAGACGGATTCTTGTCTGCATAAGGAGTATCAGTTATTTTTGTTGTGTTCTTGCTTTCGGCTGACTTACTCTGTCCCTGTGAACAGCAATACTGATAAAGTGACCACCAATGCACACTCGCAGGGGAAAAGATTCCTTGCTGAGAAGATCTGTAAGTTATCTTTCAGGAAATCATCTACCATGAAACTGGATCCGGAAGAAATCAAAGCAAGAGAAGCGAGAACAGACGTGGAATTGATTCCTGGACTACTGGAGCAACAATAG

Protein sequence

SANGQTKTDSCLHKEYQLFLLCSCFRLTYSVPVNSNTDKVTTNAHSQGKRFLAEKICKLSFRKSSTMKLDPEEIKAREARTDVELIPGLLEQQ
Homology
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BLAST of Carg05174 vs. NCBI nr
Match: KAG7027015.1 (hypothetical protein SDJN02_11023, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 188.7 bits (478), Expect = 2.2e-44
Identity = 93/93 (100.00%), Postives = 93/93 (100.00%), Query Frame = 0 

Query: 1  SANGQTKTDSCLHKEYQLFLLCSCFRLTYSVPVNSNTDKVTTNAHSQGKRFLAEKICKLS 60
          SANGQTKTDSCLHKEYQLFLLCSCFRLTYSVPVNSNTDKVTTNAHSQGKRFLAEKICKLS
Sbjct: 1  SANGQTKTDSCLHKEYQLFLLCSCFRLTYSVPVNSNTDKVTTNAHSQGKRFLAEKICKLS 60

Query: 61 FRKSSTMKLDPEEIKAREARTDVELIPGLLEQQ 94
          FRKSSTMKLDPEEIKAREARTDVELIPGLLEQQ
Sbjct: 61 FRKSSTMKLDPEEIKAREARTDVELIPGLLEQQ 93

The following BLAST results are available for this feature:
BLAST of Carg05174 vs. NCBI nr
Match NameE-valueIdentityDescription
KAG7027015.12.2e-44100.00hypothetical protein SDJN02_11023, partial [Cucurbita argyrosperma subsp. argyro... [more]
BLAST of Carg05174 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of Carg05174 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of Carg05174 vs. NCBI nr
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Carg05174-RACarg05174-RAmRNA