Carg05172 (gene) Silver-seed gourd (SMH-JMG-627) v2

Overview
NameCarg05172
Typegene
OrganismCucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
DescriptionUnknown protein
LocationCarg_Chr07: 3308023 .. 3310182 (+)
RNA-Seq ExpressionCarg05172
SyntenyCarg05172
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGCTCCAAATGGCGTTCAGAAAACCCATCATAAACCTCCCTTTCGCCGCCTTATCAGCCGTTTACTGCCGAGTCGGAGCCGGAATATTCGGTTACGGCCCGCTTCAGACGTCCTCTCGCCGGCGAGGAATTGTAAGCTTTCTTGCGAAGGGGATTGTTCTTCTTATTTGCTAATCCACCGAAACACGTGTAAAAAACAGAGAGATTGAGTTGAAGAAATGCCTACACGTGTAAAAAATAATATAATTTTTTAAAATTTTAAATTTTAAAAAATTGAAAAAATTATTTATTAAACAATTTGGAGGATTATTCAACAACTGTCCAAATATTACACTTTTCTATTTATTATTTATTTAATGAATTATTAAAATTAGCACATGGATTGTTCTAATTTGAATACTGAAATAATTTTCTCAAAAAGCGCAAGATGACGTCAGATTGTGAGAAACGTGGCGAATTTTAAGGACTCCACGTTGGCGAACATTAGAAGACCATAACTATGGGTGGGGCCAGCTCGATAACTGTCAAATAACGGTAATAAGGAAGTTATTGCCTCGTAGCAAACGTGTCATTTTCCCTTTTTTTATTTTTTTTTTCTTATTTCTTTCTTAAAATATTTTTAAATAAAAAATTGTAAATTTAATTTTTAAAAATTTAAATGTAAATATTTCTCCTCTAAGATTAATTAAAATTGTCGTATATAAATAATGTTTTTTATTTATAAAATTAAAATTCTCGATGATATCATATTGTGATTTTGACCTAGATAGGAGTGACCATCTTGGTTAAAGGAATTCAAACGATAGCGACGTGACTCCAACAAGTACGTGTAAACCTAAATCTAATGATAATGTCTTTTTCTTGCTACGACATTTAGTGATTCTTCGATGAGTGTTGCAGTTGTTAATGATCGAGTAGTTCAATTTACAAATGATTACAAGTTATCAACGATTAATTCGATGAAACACAAAGTTGTTGTTGTTGACACGAGAACAATAAATGAGTTGCATATAAATCGACGTTGTAGCATAAAGTACAAACGTGATGTCATTTTATATAATAATCAAATAATCTCATTGTTTCGGCGACGTAGTTGGTTTTGTTAGTTTCCATTACATTAATAAAAACAATACAACAATGTTCGAGACTTGATACTTCTACAACTACTGTAGCCCATCGTGCAACGTTTATCCATCGTAGGTGCAACGTTGCTCATGGTCACCTACACCCACATCCTCCACATGTCTCAAGCTATGTTCAACGTGCAATGTCAAATCTCGTAACCCTATATCAACTATAAGTCGTCAAATCTGTCGATTTACTACTAACGAATGTTTGAGCATCGTCAAATTTTGTGTATGACTCACATACCATAAAAACCCTGTTGTGAAACTCCACAAAACCGACCGAATAACGAGTCCCCATACGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAACTAACAAGAGACTTACTCATCGTTCACTTATTTTCAGTTCTTCACCGTCTACACCATGTGAGATAGTTGTACATGACGTGTTCAAAAATGCACTAGAAGTTTATTTTTATCACTTTAATGTAATTTTTCATTATATTCGTAATTATAAGCGTATTTTTTTTTCAATAAACTTTAAATATCATGAATTTTAATATATATATTTTAAAGTTTAAATACATAATTAAGAAAGTTTGGGGATTTTTTTAATTTTTTTTTATAATTTTGGAAATACAGGTGGCAGTTTTGAAGGGGTTTTCCGACGTCGGCGGCGGAGCAAGGCGGTGGGAGGTGGTATAATCTTGTGGAAGTCACCATCACCGGCGTGCAGACAAAATGTTTAAGCTCATTATGTCACCATCATACCAGAAATTAAATAAATAAAAATTATATTTTTCATGAAAATAAAAAGAAAAAGAAAAAGAAAAAGAAAAAGAAAATTACTTTCCAAAGCAAGCACACTGTACTATAATAGGAAGATTAGTTCCCGTTTCCTGTTCTACGTTCTCTTCGTCCCCCTAGGGCTTGCCCATTAATTTCCCCCTTCTCCATTCCTTCAGGGGACATCTTTGTTATGTAATTCTCAATCTTGAACTCAGATTTCAAACGCTGGGAAAGGCTTCAATCCAATCACCGGCGTTTCTCCGATTTCTCCTTGA

mRNA sequence

ATGCTCCAAATGGCGTTCAGAAAACCCATCATAAACCTCCCTTTCGCCGCCTTATCAGCCGTTTACTGCCGAGTCGGAGCCGGAATATTCGGTTACGGCCCGCTTCAGACGTCCTCTCGCCGGCGAGGAATTGTGGCAGTTTTGAAGGGGTTTTCCGACGTCGGCGGCGGAGCAAGGCGGTGGGAGGTGATTTCAAACGCTGGGAAAGGCTTCAATCCAATCACCGGCGTTTCTCCGATTTCTCCTTGA

Coding sequence (CDS)

ATGCTCCAAATGGCGTTCAGAAAACCCATCATAAACCTCCCTTTCGCCGCCTTATCAGCCGTTTACTGCCGAGTCGGAGCCGGAATATTCGGTTACGGCCCGCTTCAGACGTCCTCTCGCCGGCGAGGAATTGTGGCAGTTTTGAAGGGGTTTTCCGACGTCGGCGGCGGAGCAAGGCGGTGGGAGGTGATTTCAAACGCTGGGAAAGGCTTCAATCCAATCACCGGCGTTTCTCCGATTTCTCCTTGA

Protein sequence

MLQMAFRKPIINLPFAALSAVYCRVGAGIFGYGPLQTSSRRRGIVAVLKGFSDVGGGARRWEVISNAGKGFNPITGVSPISP
Homology
[Close]
BLAST of Carg05172 vs. NCBI nr
Match: KAG6604935.1 (hypothetical protein SDJN03_02252, partial [Cucurbita argyrosperma subsp. sororia] >KAG7027013.1 hypothetical protein SDJN02_11021, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 166.4 bits (420), Expect = 1.0e-37
Identity = 82/82 (100.00%), Postives = 82/82 (100.00%), Query Frame = 0 

Query: 1  MLQMAFRKPIINLPFAALSAVYCRVGAGIFGYGPLQTSSRRRGIVAVLKGFSDVGGGARR 60
          MLQMAFRKPIINLPFAALSAVYCRVGAGIFGYGPLQTSSRRRGIVAVLKGFSDVGGGARR
Sbjct: 1  MLQMAFRKPIINLPFAALSAVYCRVGAGIFGYGPLQTSSRRRGIVAVLKGFSDVGGGARR 60

Query: 61 WEVISNAGKGFNPITGVSPISP 83
          WEVISNAGKGFNPITGVSPISP
Sbjct: 61 WEVISNAGKGFNPITGVSPISP 82

The following BLAST results are available for this feature:
BLAST of Carg05172 vs. NCBI nr
Match NameE-valueIdentityDescription
KAG6604935.11.0e-37100.00hypothetical protein SDJN03_02252, partial [Cucurbita argyrosperma subsp. sorori... [more]
BLAST of Carg05172 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of Carg05172 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of Carg05172 vs. NCBI nr
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Carg05172-RACarg05172-RAmRNA