Carg05168 (gene) Silver-seed gourd (SMH-JMG-627) v2

Overview


Name	Carg05168
Type	gene
Organism	Cucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
Description	Poly(A)-specific ribonuclease
Location	Carg_Chr07: 3285590 .. 3286639 (-)
RNA-Seq Expression	Carg05168
Synteny	Carg05168

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGATAGAATTGTTCGAGGCCCGAGAGGAGACAACCCTTTGATTAGAGAGGTATGGGCTTACAATCTTGATCATGAAATCATTCGGCTCGACCGTTGTTTGGTATCCTACTCAGTTATGTCGATCGATACGGAATTTCCTGGGTGTATTAAGAGAACTCCTTGGGGCACGATTGATGAAGAACTCTACGCAGACTTTCGATTCAATGTCAACCAAACCAAGGTGATTCAACTAGGTGTGACAGTTTCTGATGAATTAGGGAACATCGGCGGTACATGGGAGTTTAATTTCTCTGACTTCGATCCTGAAATCGACGCTCATAACCCTGCGTCGATTTGTTTTCTGAAACAGAACGGCTTGGATTTTGGAAAACTTAAAAAAGATGGAATTAAGGTTAGAAAATTCGCAATAAGATTCTTATATACGTTGCGAAAGCATGCGATATACCGGTGGATTACATTTCACGGATTATACGATATTGGATATCTGATGTTGGCGATGGGCGTGGTTAAAAGCTTGCCGGAAACATTGGGAGAATTCGAATGGATCGTGGCGAGGAGAGTGGGGACCGTGAGGGATTTAAAGCATATGGCGCGATTCTGCGAAGGGCTCGAAGGGGGCAATTTAGGACTCGAGAAATTAGGGCAGTTGCTGGACCAAAAACGCTTTGGATTGAAGCATCACGCTGGTTCTGATAGTTTAATGACTGCGCTGCTTCATGAGAAGATGTTGCAACGGTATGATTTCCATGCGGAAATTTGCGATGGGTTTTTGTATGGGCTATCGAAGAAATTCGAGGAGCTCGTGGGCTTGCAAACACATCGCATATATGTTCAAATTCAGTGTGCGAGAGTGAAAGCTATGGTGATTCATAAGAAGATGTTACAACTGTTTGAGGTGGAAAGTTGCAATGAATATGAGCTGTCGAAGAAATTAAAGGAGTTCGAGGTCTTGATATCACACTTCAGATTTGTTGAACACGAGTATGAGACGGCGCAATTTTGTTATTACAAGGCTTGCAACATTATGTACCAAGGATTTCATCTTTGA

mRNA sequence

ATGGATAGAATTGTTCGAGGCCCGAGAGGAGACAACCCTTTGATTAGAGAGGTATGGGCTTACAATCTTGATCATGAAATCATTCGGCTCGACCGTTGTTTGGTATCCTACTCAGTTATGTCGATCGATACGGAATTTCCTGGGTGTATTAAGAGAACTCCTTGGGGCACGATTGATGAAGAACTCTACGCAGACTTTCGATTCAATGTCAACCAAACCAAGGTGATTCAACTAGGTGTGACAGTTTCTGATGAATTAGGGAACATCGGCGGTACATGGGAGTTTAATTTCTCTGACTTCGATCCTGAAATCGACGCTCATAACCCTGCGTCGATTTGTTTTCTGAAACAGAACGGCTTGGATTTTGGAAAACTTAAAAAAGATGGAATTAAGGTTAGAAAATTCGCAATAAGATTCTTATATACGTTGCGAAAGCATGCGATATACCGGTGGATTACATTTCACGGATTATACGATATTGGATATCTGATGTTGGCGATGGGCGTGGTTAAAAGCTTGCCGGAAACATTGGGAGAATTCGAATGGATCGTGGCGAGGAGAGTGGGGACCGTGAGGGATTTAAAGCATATGGCGCGATTCTGCGAAGGGCTCGAAGGGGGCAATTTAGGACTCGAGAAATTAGGGCAGTTGCTGGACCAAAAACGCTTTGGATTGAAGCATCACGCTGGTTCTGATAGTTTAATGACTGCGCTGCTTCATGAGAAGATGTTGCAACGGTATGATTTCCATGCGGAAATTTGCGATGGGTTTTTGTATGGGCTATCGAAGAAATTCGAGGAGCTCGTGGGCTTGCAAACACATCGCATATATGTTCAAATTCAGTGTGCGAGAGTGAAAGCTATGGTGATTCATAAGAAGATGTTACAACTGTTTGAGGTGGAAAGTTGCAATGAATATGAGCTGTCGAAGAAATTAAAGGAGTTCGAGGTCTTGATATCACACTTCAGATTTGTTGAACACGAGTATGAGACGGCGCAATTTTGTTATTACAAGGCTTGCAACATTATGTACCAAGGATTTCATCTTTGA

Coding sequence (CDS)

ATGGATAGAATTGTTCGAGGCCCGAGAGGAGACAACCCTTTGATTAGAGAGGTATGGGCTTACAATCTTGATCATGAAATCATTCGGCTCGACCGTTGTTTGGTATCCTACTCAGTTATGTCGATCGATACGGAATTTCCTGGGTGTATTAAGAGAACTCCTTGGGGCACGATTGATGAAGAACTCTACGCAGACTTTCGATTCAATGTCAACCAAACCAAGGTGATTCAACTAGGTGTGACAGTTTCTGATGAATTAGGGAACATCGGCGGTACATGGGAGTTTAATTTCTCTGACTTCGATCCTGAAATCGACGCTCATAACCCTGCGTCGATTTGTTTTCTGAAACAGAACGGCTTGGATTTTGGAAAACTTAAAAAAGATGGAATTAAGGTTAGAAAATTCGCAATAAGATTCTTATATACGTTGCGAAAGCATGCGATATACCGGTGGATTACATTTCACGGATTATACGATATTGGATATCTGATGTTGGCGATGGGCGTGGTTAAAAGCTTGCCGGAAACATTGGGAGAATTCGAATGGATCGTGGCGAGGAGAGTGGGGACCGTGAGGGATTTAAAGCATATGGCGCGATTCTGCGAAGGGCTCGAAGGGGGCAATTTAGGACTCGAGAAATTAGGGCAGTTGCTGGACCAAAAACGCTTTGGATTGAAGCATCACGCTGGTTCTGATAGTTTAATGACTGCGCTGCTTCATGAGAAGATGTTGCAACGGTATGATTTCCATGCGGAAATTTGCGATGGGTTTTTGTATGGGCTATCGAAGAAATTCGAGGAGCTCGTGGGCTTGCAAACACATCGCATATATGTTCAAATTCAGTGTGCGAGAGTGAAAGCTATGGTGATTCATAAGAAGATGTTACAACTGTTTGAGGTGGAAAGTTGCAATGAATATGAGCTGTCGAAGAAATTAAAGGAGTTCGAGGTCTTGATATCACACTTCAGATTTGTTGAACACGAGTATGAGACGGCGCAATTTTGTTATTACAAGGCTTGCAACATTATGTACCAAGGATTTCATCTTTGA

Protein sequence

MDRIVRGPRGDNPLIREVWAYNLDHEIIRLDRCLVSYSVMSIDTEFPGCIKRTPWGTIDEELYADFRFNVNQTKVIQLGVTVSDELGNIGGTWEFNFSDFDPEIDAHNPASICFLKQNGLDFGKLKKDGIKVRKFAIRFLYTLRKHAIYRWITFHGLYDIGYLMLAMGVVKSLPETLGEFEWIVARRVGTVRDLKHMARFCEGLEGGNLGLEKLGQLLDQKRFGLKHHAGSDSLMTALLHEKMLQRYDFHAEICDGFLYGLSKKFEELVGLQTHRIYVQIQCARVKAMVIHKKMLQLFEVESCNEYELSKKLKEFEVLISHFRFVEHEYETAQFCYYKACNIMYQGFHL

Homology

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BLAST of Carg05168 vs. NCBI nr
Match: KAG7027009.1 (putative CCR4-associated factor 1-like 1, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 726.5 bits (1874), Expect = 1.1e-205
Identity = 349/349 (100.00%), Postives = 349/349 (100.00%), Query Frame = 0


Query: 1   MDRIVRGPRGDNPLIREVWAYNLDHEIIRLDRCLVSYSVMSIDTEFPGCIKRTPWGTIDE 60
           MDRIVRGPRGDNPLIREVWAYNLDHEIIRLDRCLVSYSVMSIDTEFPGCIKRTPWGTIDE
Sbjct: 1   MDRIVRGPRGDNPLIREVWAYNLDHEIIRLDRCLVSYSVMSIDTEFPGCIKRTPWGTIDE 60

Query: 61  ELYADFRFNVNQTKVIQLGVTVSDELGNIGGTWEFNFSDFDPEIDAHNPASICFLKQNGL 120
           ELYADFRFNVNQTKVIQLGVTVSDELGNIGGTWEFNFSDFDPEIDAHNPASICFLKQNGL
Sbjct: 61  ELYADFRFNVNQTKVIQLGVTVSDELGNIGGTWEFNFSDFDPEIDAHNPASICFLKQNGL 120

Query: 121 DFGKLKKDGIKVRKFAIRFLYTLRKHAIYRWITFHGLYDIGYLMLAMGVVKSLPETLGEF 180
           DFGKLKKDGIKVRKFAIRFLYTLRKHAIYRWITFHGLYDIGYLMLAMGVVKSLPETLGEF
Sbjct: 121 DFGKLKKDGIKVRKFAIRFLYTLRKHAIYRWITFHGLYDIGYLMLAMGVVKSLPETLGEF 180

Query: 181 EWIVARRVGTVRDLKHMARFCEGLEGGNLGLEKLGQLLDQKRFGLKHHAGSDSLMTALLH 240
           EWIVARRVGTVRDLKHMARFCEGLEGGNLGLEKLGQLLDQKRFGLKHHAGSDSLMTALLH
Sbjct: 181 EWIVARRVGTVRDLKHMARFCEGLEGGNLGLEKLGQLLDQKRFGLKHHAGSDSLMTALLH 240

Query: 241 EKMLQRYDFHAEICDGFLYGLSKKFEELVGLQTHRIYVQIQCARVKAMVIHKKMLQLFEV 300
           EKMLQRYDFHAEICDGFLYGLSKKFEELVGLQTHRIYVQIQCARVKAMVIHKKMLQLFEV
Sbjct: 241 EKMLQRYDFHAEICDGFLYGLSKKFEELVGLQTHRIYVQIQCARVKAMVIHKKMLQLFEV 300

Query: 301 ESCNEYELSKKLKEFEVLISHFRFVEHEYETAQFCYYKACNIMYQGFHL 350
           ESCNEYELSKKLKEFEVLISHFRFVEHEYETAQFCYYKACNIMYQGFHL
Sbjct: 301 ESCNEYELSKKLKEFEVLISHFRFVEHEYETAQFCYYKACNIMYQGFHL 349

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BLAST of Carg05168 vs. NCBI nr
Match: KAG6604930.1 (putative CCR4-associated factor 1-like 1, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 725.7 bits (1872), Expect = 1.9e-205
Identity = 348/349 (99.71%), Postives = 349/349 (100.00%), Query Frame = 0


Query: 1   MDRIVRGPRGDNPLIREVWAYNLDHEIIRLDRCLVSYSVMSIDTEFPGCIKRTPWGTIDE 60
           MDRIVRGPRGDNPLIREVWAYNLDHEIIRLDRCLVSYSVMSIDTEFPGCIKRTPWGTIDE
Sbjct: 1   MDRIVRGPRGDNPLIREVWAYNLDHEIIRLDRCLVSYSVMSIDTEFPGCIKRTPWGTIDE 60

Query: 61  ELYADFRFNVNQTKVIQLGVTVSDELGNIGGTWEFNFSDFDPEIDAHNPASICFLKQNGL 120
           ELYADFRFNVNQTKVIQLGVTVSDELGNIGGTWEFNFSDFDPEIDAHNPASICFLKQNGL
Sbjct: 61  ELYADFRFNVNQTKVIQLGVTVSDELGNIGGTWEFNFSDFDPEIDAHNPASICFLKQNGL 120

Query: 121 DFGKLKKDGIKVRKFAIRFLYTLRKHAIYRWITFHGLYDIGYLMLAMGVVKSLPETLGEF 180
           DFGKLKKDGIKVRKFAIRF+YTLRKHAIYRWITFHGLYDIGYLMLAMGVVKSLPETLGEF
Sbjct: 121 DFGKLKKDGIKVRKFAIRFIYTLRKHAIYRWITFHGLYDIGYLMLAMGVVKSLPETLGEF 180

Query: 181 EWIVARRVGTVRDLKHMARFCEGLEGGNLGLEKLGQLLDQKRFGLKHHAGSDSLMTALLH 240
           EWIVARRVGTVRDLKHMARFCEGLEGGNLGLEKLGQLLDQKRFGLKHHAGSDSLMTALLH
Sbjct: 181 EWIVARRVGTVRDLKHMARFCEGLEGGNLGLEKLGQLLDQKRFGLKHHAGSDSLMTALLH 240

Query: 241 EKMLQRYDFHAEICDGFLYGLSKKFEELVGLQTHRIYVQIQCARVKAMVIHKKMLQLFEV 300
           EKMLQRYDFHAEICDGFLYGLSKKFEELVGLQTHRIYVQIQCARVKAMVIHKKMLQLFEV
Sbjct: 241 EKMLQRYDFHAEICDGFLYGLSKKFEELVGLQTHRIYVQIQCARVKAMVIHKKMLQLFEV 300

Query: 301 ESCNEYELSKKLKEFEVLISHFRFVEHEYETAQFCYYKACNIMYQGFHL 350
           ESCNEYELSKKLKEFEVLISHFRFVEHEYETAQFCYYKACNIMYQGFHL
Sbjct: 301 ESCNEYELSKKLKEFEVLISHFRFVEHEYETAQFCYYKACNIMYQGFHL 349

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BLAST of Carg05168 vs. NCBI nr
Match: XP_022947868.1 (putative CCR4-associated factor 1 homolog 8 [Cucurbita moschata])

HSP 1 Score: 712.6 bits (1838), Expect = 1.7e-201
Identity = 340/349 (97.42%), Postives = 345/349 (98.85%), Query Frame = 0


Query: 1   MDRIVRGPRGDNPLIREVWAYNLDHEIIRLDRCLVSYSVMSIDTEFPGCIKRTPWGTIDE 60
           MDRIVRGPRGDNPLIREVWAYNLDHEIIRLDRCL+SYS+MSIDTEFPGCIKRTPWGT DE
Sbjct: 1   MDRIVRGPRGDNPLIREVWAYNLDHEIIRLDRCLLSYSIMSIDTEFPGCIKRTPWGTFDE 60

Query: 61  ELYADFRFNVNQTKVIQLGVTVSDELGNIGGTWEFNFSDFDPEIDAHNPASICFLKQNGL 120
           ELYADFRFNVNQTKVIQLGVTVSDE GNIGGTWEFNFSDFDPEIDAHNPASICFLKQNGL
Sbjct: 61  ELYADFRFNVNQTKVIQLGVTVSDESGNIGGTWEFNFSDFDPEIDAHNPASICFLKQNGL 120

Query: 121 DFGKLKKDGIKVRKFAIRFLYTLRKHAIYRWITFHGLYDIGYLMLAMGVVKSLPETLGEF 180
           DFGKLKKDGIKVRKFAIRFLYTL KHAIYRW+TFHGLYDIGYLMLAMGVVKSLPETLGEF
Sbjct: 121 DFGKLKKDGIKVRKFAIRFLYTLGKHAIYRWVTFHGLYDIGYLMLAMGVVKSLPETLGEF 180

Query: 181 EWIVARRVGTVRDLKHMARFCEGLEGGNLGLEKLGQLLDQKRFGLKHHAGSDSLMTALLH 240
           +WIVARRVGTVRDLKHMARFCEGLEGGNLGLEKLGQLLDQKRFGLKHHAGSDSLMTALLH
Sbjct: 181 KWIVARRVGTVRDLKHMARFCEGLEGGNLGLEKLGQLLDQKRFGLKHHAGSDSLMTALLH 240

Query: 241 EKMLQRYDFHAEICDGFLYGLSKKFEELVGLQTHRIYVQIQCARVKAMVIHKKMLQLFEV 300
           EKMLQRYDFHAEICDGFLYGLSKKFEELVGLQTHRIYVQIQCARVKAMVIHKKMLQLFEV
Sbjct: 241 EKMLQRYDFHAEICDGFLYGLSKKFEELVGLQTHRIYVQIQCARVKAMVIHKKMLQLFEV 300

Query: 301 ESCNEYELSKKLKEFEVLISHFRFVEHEYETAQFCYYKACNIMYQGFHL 350
           ESCNEYELSKKLKEFEVL SHF+FVEHEYETAQFCYYKACNIMYQGFHL
Sbjct: 301 ESCNEYELSKKLKEFEVLKSHFKFVEHEYETAQFCYYKACNIMYQGFHL 349

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BLAST of Carg05168 vs. NCBI nr
Match: XP_023533172.1 (putative CCR4-associated factor 1 homolog 8 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 709.1 bits (1829), Expect = 1.8e-200
Identity = 338/349 (96.85%), Postives = 345/349 (98.85%), Query Frame = 0


Query: 1   MDRIVRGPRGDNPLIREVWAYNLDHEIIRLDRCLVSYSVMSIDTEFPGCIKRTPWGTIDE 60
           MDRIVRGPRGDNPLIREVWAYNLDHEIIRLDRCL+SYSVMSIDTEFPGCIKRTPWGTIDE
Sbjct: 1   MDRIVRGPRGDNPLIREVWAYNLDHEIIRLDRCLLSYSVMSIDTEFPGCIKRTPWGTIDE 60

Query: 61  ELYADFRFNVNQTKVIQLGVTVSDELGNIGGTWEFNFSDFDPEIDAHNPASICFLKQNGL 120
           ELYADFRFNVNQTKVIQLGVTVSDE+GNIGGTWEFNFSDFDPEIDAHNPASICFLKQNGL
Sbjct: 61  ELYADFRFNVNQTKVIQLGVTVSDEVGNIGGTWEFNFSDFDPEIDAHNPASICFLKQNGL 120

Query: 121 DFGKLKKDGIKVRKFAIRFLYTLRKHAIYRWITFHGLYDIGYLMLAMGVVKSLPETLGEF 180
           DFGKLKKDGI+VRKFAIRFLYT+RKHAIYRW+TFHGLYDIGYLMLAMGVVKSLPETLGEF
Sbjct: 121 DFGKLKKDGIQVRKFAIRFLYTIRKHAIYRWVTFHGLYDIGYLMLAMGVVKSLPETLGEF 180

Query: 181 EWIVARRVGTVRDLKHMARFCEGLEGGNLGLEKLGQLLDQKRFGLKHHAGSDSLMTALLH 240
           EWIVARRVGTVRDLKHMARFCEGLEGGNLGLEKLGQLLDQKRFGLKHHAGSDSLMTALLH
Sbjct: 181 EWIVARRVGTVRDLKHMARFCEGLEGGNLGLEKLGQLLDQKRFGLKHHAGSDSLMTALLH 240

Query: 241 EKMLQRYDFHAEICDGFLYGLSKKFEELVGLQTHRIYVQIQCARVKAMVIHKKMLQLFEV 300
           EKMLQRYDF+AEICDGFLYGLSKKFEE VGLQTHRIYVQIQCARVKAMVIHKKMLQLF+V
Sbjct: 241 EKMLQRYDFNAEICDGFLYGLSKKFEEFVGLQTHRIYVQIQCARVKAMVIHKKMLQLFDV 300

Query: 301 ESCNEYELSKKLKEFEVLISHFRFVEHEYETAQFCYYKACNIMYQGFHL 350
           ESCNEYELSKKLKEFEVL SHFRFVEHEYE AQFCYY ACNIMYQGFHL
Sbjct: 301 ESCNEYELSKKLKEFEVLKSHFRFVEHEYEMAQFCYYNACNIMYQGFHL 349

[Close]

BLAST of Carg05168 vs. NCBI nr
Match: XP_022970734.1 (putative CCR4-associated factor 1 homolog 8 [Cucurbita maxima] >XP_022970738.1 putative CCR4-associated factor 1 homolog 8 [Cucurbita maxima])

HSP 1 Score: 637.5 bits (1643), Expect = 6.8e-179
Identity = 306/345 (88.70%), Postives = 323/345 (93.62%), Query Frame = 0


Query: 1   MDRIVRGPRGDNPLIREVWAYNLDHEIIRLDRCLVSYSVMSIDTEFPGCIKRTPWGTIDE 60
           MDRIV+GPRGDNPLI EVWAYNLD EI+RLD CL+ Y VMSIDTEFPGCIKRTPWGTIDE
Sbjct: 1   MDRIVQGPRGDNPLITEVWAYNLDDEILRLDHCLLLYPVMSIDTEFPGCIKRTPWGTIDE 60

Query: 61  ELYADFRFNVNQTKVIQLGVTVSDELGNIGGTWEFNFSDFDPEIDAHNPASICFLKQNGL 120
           ELYADFRFNVNQTKVIQLGVTVSDE GNIGGTWEFNFSDFDPEIDAHNPASICFLKQNGL
Sbjct: 61  ELYADFRFNVNQTKVIQLGVTVSDESGNIGGTWEFNFSDFDPEIDAHNPASICFLKQNGL 120

Query: 121 DFGKLKKDGIKVRKFAIRFLYTLRKHAIYRWITFHGLYDIGYLMLAMGVVKSLPETLGEF 180
           DFGKLKKDGIKVRKFAIRFLYT+RKHAI++WITFHGLYDIGYL+LA+GVVKSLPETLGEF
Sbjct: 121 DFGKLKKDGIKVRKFAIRFLYTMRKHAIHQWITFHGLYDIGYLILALGVVKSLPETLGEF 180

Query: 181 EWIVARRVGTVRDLKHMARFCEGLEGGNLGLEKLGQLLDQKRFGLKHHAGSDSLMTALLH 240
           EWIVARRVGTVRDLKHMARFCEGLEGGNLGLEKLGQLLDQKRFGLKHHAGSDSLMTALLH
Sbjct: 181 EWIVARRVGTVRDLKHMARFCEGLEGGNLGLEKLGQLLDQKRFGLKHHAGSDSLMTALLH 240

Query: 241 EKMLQRYDFHAEICDGFLYGLSKKFEELVGLQTHRIYVQIQCARVKAMVIHKKMLQLFEV 300
           EKMLQ YDF+AEICDGFLYGLSKKFEE VG+Q+HRIYVQI+CA VKAMVI KKML+LF  
Sbjct: 241 EKMLQLYDFNAEICDGFLYGLSKKFEEFVGMQSHRIYVQIKCAEVKAMVIRKKMLKLFYA 300

Query: 301 ESCNEYELSKKLKEFEVLISHFRFVEHEYETAQFCYYKACNIMYQ 346
           + C+EYELSKK KEF+VL SH RFV+ E E  QF YYKA NIMYQ
Sbjct: 301 KICDEYELSKKFKEFKVLQSHLRFVQQECEIGQFYYYKASNIMYQ 345

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BLAST of Carg05168 vs. ExPASy Swiss-Prot
Match: Q9SHJ0 (Probable CCR4-associated factor 1 homolog 1 OS=Arabidopsis thaliana OX=3702 GN=CAF1-1 PE=2 SV=1)

HSP 1 Score: 195.7 bits (496), Expect = 8.9e-49
Identity = 106/253 (41.90%), Postives = 145/253 (57.31%), Query Frame = 0


Query: 13  PLIREVWAYNLDHEIIRLDRCLVSYSVMSIDTEFPGCIKRTPWGTIDEELYADFRFNVNQ 72
           PL R VW  N+D E+ R+  CL  + +++ DTE+PG I RT + +  +E Y   + NV  
Sbjct: 7   PLARRVWRSNVDEEMARMAECLKRFPLIAFDTEYPGIIFRTYFDSSSDECYRAMKGNVEN 66

Query: 73  TKVIQLGVTVSDELGNIGGTWEFNFSDFDPEIDAHNPASICFLKQNGLDFGKLKKDGIKV 132
           TK+IQ G T+ +  G IGG WE NFS+F    D  N  SI FL+++GLD  K++ +G+ +
Sbjct: 67  TKLIQCGFTLFNAKGEIGGVWEINFSNFGDPSDTRNELSIEFLRRHGLDLQKIRDEGVDM 126

Query: 133 RKFAI--RFLYTLRKHAIYRWITFHGLYDIGYLMLAMGVVKSLPETLGEFEWIVARRVGT 192
             +    + +   R      ++TF G YD  Y +  +   K LPET GEF   V +  G 
Sbjct: 127 FGYGFFPKLMTVFRSQKHVEFVTFQGAYDFAYFLSILNHGK-LPETHGEFATEVVKVFGQ 186

Query: 193 VRDLKHMARFCEGLEGGNLGLEKLGQLLDQKRFGLKHHAGSDSLMTALLHEKMLQRYDFH 252
           V D K MA FCEGL G +LGL KL QLL   R G  HHAGSDSLMTAL+  K+   Y+  
Sbjct: 187 VYDTKVMAGFCEGL-GEHLGLSKLAQLLQITRVGRAHHAGSDSLMTALVFIKLKHVYE-D 246

Query: 253 AEICDGFLYGLSK 264
           +    G +YG+ K
Sbjct: 247 SRFARGLIYGIGK 256

[Close]

BLAST of Carg05168 vs. ExPASy Swiss-Prot
Match: O64773 (Probable CCR4-associated factor 1 homolog 5 OS=Arabidopsis thaliana OX=3702 GN=CAF1-5 PE=2 SV=1)

HSP 1 Score: 182.2 bits (461), Expect = 1.0e-44
Identity = 98/230 (42.61%), Postives = 135/230 (58.70%), Query Frame = 0


Query: 17  EVWAYNLDHEIIRLDRCLVSYSVMSIDTEFPGCIKRTPWGTIDEELYADFRFNVNQTKVI 76
           EVW +N   E+  +  CL   + ++IDTEFPGC+K TP    DE  Y D +FNV+ T +I
Sbjct: 4   EVWRWNKQAEMNSIRDCLKHCNSIAIDTEFPGCLKETPMDASDEIRYRDMKFNVDNTHLI 63

Query: 77  QLGVTVSDELGNIGGTWEFNFSDFDPEIDAHNPASICFLKQNGLDFGKLKKDGIKVRKFA 136
           QLG+T+  +   I  TWE N SDF+      N  SI FLK NGLD  K++++GI + +F 
Sbjct: 64  QLGLTLFGK--GITKTWEINLSDFNESKSLKNDKSIAFLKNNGLDLDKIREEGIGIEEFF 123

Query: 137 IRFLYTL-RKHAIYRWITFHGLYDIGYLMLAMGVVKSLPETLGEFEWIVARRVGT-VRDL 196
           + F   L  KH   RW+TF G YD  YL+  +   K LPET  EF+  V + +G  V D+
Sbjct: 124 MEFSQILNEKHGKMRWVTFQGSYDKAYLLKGL-TRKPLPETSKEFDETVQQLLGRFVYDV 183

Query: 197 KHMARFCEGLEGGNLGLEKLGQLLDQKRFGLKHHAGSDSLMTALLHEKML 245
           K MA  C GL     GL+++  +L  +R G  HHAGSDS +TA +  K++
Sbjct: 184 KKMAGLCSGL-SSRFGLQRIADVLQMRRVGKAHHAGSDSELTARVFTKLI 229

[Close]

BLAST of Carg05168 vs. ExPASy Swiss-Prot
Match: Q9LXM4 (Putative CCR4-associated factor 1 homolog 8 OS=Arabidopsis thaliana OX=3702 GN=CAF1-8 PE=3 SV=1)

HSP 1 Score: 180.6 bits (457), Expect = 3.0e-44
Identity = 98/219 (44.75%), Postives = 134/219 (61.19%), Query Frame = 0


Query: 30  LDRCLVSYSVMSIDTEFPGCIKRTPWGTIDEELYADFRFNVNQTKVIQLGVTVSDELGNI 89
           ++ CL SY  ++IDTEFP  ++ T     DEE Y D  F+V++ K+IQLG+T+ D  G I
Sbjct: 4   IEDCLRSYRFIAIDTEFPSTLRETTQHATDEERYMDMSFSVDRAKLIQLGLTLFDINGRI 63

Query: 90  GGTWEFNFSDFDPEIDAHNPASICFLKQNGLDFGKLKKDGIKVRKFAIRFLYTLRK-HAI 149
           GGTWE NFSDF  + DA N  SI FL++NGLD  K++++GI++  F     + L+K    
Sbjct: 64  GGTWEINFSDFGVD-DARNEKSIEFLRRNGLDLRKIREEGIRIEGFFSEMFWMLKKTRRN 123

Query: 150 YRWITFHGLYDIGYLMLAMGVVKSLPETLGEFEWIVARRVGTVRDLKHMARFCEGLEGGN 209
             W+TFHG YDI YL+      ++LP T   F   VAR +G+V DLK MA  CEGL    
Sbjct: 124 ITWVTFHGSYDIAYLLKGF-TGEALPVTSERFSKAVARVLGSVYDLKVMAGRCEGL-SSR 183

Query: 210 LGLEKLGQLLDQKRFGLKHHAGSDSLMTALLHEKMLQRY 248
           LGLE L       R G  HHAGS++ +TA++  K+L  +
Sbjct: 184 LGLETLAHEFGLNRVGTAHHAGSNNELTAMVFAKVLSPF 219

[Close]

BLAST of Carg05168 vs. ExPASy Swiss-Prot
Match: Q9C6M9 (Putative CCR4-associated factor 1 homolog 4 OS=Arabidopsis thaliana OX=3702 GN=CAF1-4 PE=3 SV=1)

HSP 1 Score: 173.7 bits (439), Expect = 3.6e-42
Identity = 96/229 (41.92%), Postives = 131/229 (57.21%), Query Frame = 0


Query: 17  EVWAYNLDHEIIRLDRCLVSYSVMSIDTEFPGCIKRTPWGTIDEELYADFRFNVNQTKVI 76
           EVW +N + E+  +  CL  +S ++IDTEFPGC+K TP    +E  Y D +FNV+ T +I
Sbjct: 3   EVWRWNKEVEMDSIRDCLKHFSSIAIDTEFPGCLKETPMDASEEIRYRDMKFNVDNTHLI 62

Query: 77  QLGVTVSDELGNIGGTWEFNFSDFDPEIDAHNPASICFLKQNGLDFGKLKKDGIKVRKFA 136
           QLG T+ D  G I  TWE N SDF+      N  SI FLK NGL+  K+ ++GI + +F 
Sbjct: 63  QLGFTLFDRRG-ITKTWEINLSDFNEHKCFKNDKSIAFLKSNGLNLDKIGEEGIGIEEFF 122

Query: 137 IRFLYTLR-KHAIYRWITFHGLYDIGYLMLAMGVVKSLPETLGEFEWIVARRVGT-VRDL 196
             F   L+ K     W+ F G YD  YL+  +   K LPET  EF   V + +G  V D+
Sbjct: 123 RDFSQILKEKDGKITWVNFQGSYDNAYLVKGLTGGKPLPETKEEFHETVEQLLGKFVFDV 182

Query: 197 KHMARFCEGLEGGNLGLEKLGQLLDQKRFGLKHHAGSDSLMTALLHEKM 244
           K +A  C GL     GL+++  +L  KR G  HHAGSDS +TA +  K+
Sbjct: 183 KKIAESCSGL-SSRFGLQRIADVLQMKRVGKAHHAGSDSELTARVFTKL 229

[Close]

BLAST of Carg05168 vs. ExPASy Swiss-Prot
Match: Q9SFX6 (Putative CCR4-associated factor 1 homolog 3 OS=Arabidopsis thaliana OX=3702 GN=CAF1-3 PE=3 SV=1)

HSP 1 Score: 172.9 bits (437), Expect = 6.2e-42
Identity = 96/229 (41.92%), Postives = 129/229 (56.33%), Query Frame = 0


Query: 17  EVWAYNLDHEIIRLDRCLVSYSVMSIDTEFPGCIKRTPWGTIDEELYADFRFNVNQTKVI 76
           EVW +N + E+  +  CL   S ++IDTEFPGC+K TP    +E  Y D +FNV+ T +I
Sbjct: 8   EVWRWNKEVEMNSIRDCLKHCSSIAIDTEFPGCLKETPMDASEEIRYRDMKFNVDNTHLI 67

Query: 77  QLGVTVSDELGNIGGTWEFNFSDFDPEIDAHNPASICFLKQNGLDFGKLKKDGIKVRKFA 136
           QLG T+ D  G    TWE N SDFD      N  SI FLK NGL+  K++++GI + +F 
Sbjct: 68  QLGFTLFDRRG-FAKTWEINLSDFDEHKCFKNDKSIAFLKSNGLNLDKIREEGIGIDEFF 127

Query: 137 IRFLYTL-RKHAIYRWITFHGLYDIGYLMLAMGVVKSLPETLGEFEWIVARRVGT-VRDL 196
             F   L  K     W+ F G YD  YL+  +   K LPET  EF   V + +G  V D+
Sbjct: 128 RDFSQILTEKDGKITWVNFQGSYDNAYLVKGLTGGKPLPETKEEFHETVQQLLGKFVFDV 187

Query: 197 KHMARFCEGLEGGNLGLEKLGQLLDQKRFGLKHHAGSDSLMTALLHEKM 244
           K +A  C GL     GL+++  +L  KR G  HHAGSDS +TA +  K+
Sbjct: 188 KKIAESCSGL-SSQFGLQRIADVLQMKRVGKAHHAGSDSELTARVFTKL 234

[Close]

BLAST of Carg05168 vs. ExPASy TrEMBL
Match: A0A6J1G7T4 (Poly(A)-specific ribonuclease OS=Cucurbita moschata OX=3662 GN=LOC111451626 PE=3 SV=1)

HSP 1 Score: 712.6 bits (1838), Expect = 8.0e-202
Identity = 340/349 (97.42%), Postives = 345/349 (98.85%), Query Frame = 0


Query: 1   MDRIVRGPRGDNPLIREVWAYNLDHEIIRLDRCLVSYSVMSIDTEFPGCIKRTPWGTIDE 60
           MDRIVRGPRGDNPLIREVWAYNLDHEIIRLDRCL+SYS+MSIDTEFPGCIKRTPWGT DE
Sbjct: 1   MDRIVRGPRGDNPLIREVWAYNLDHEIIRLDRCLLSYSIMSIDTEFPGCIKRTPWGTFDE 60

Query: 61  ELYADFRFNVNQTKVIQLGVTVSDELGNIGGTWEFNFSDFDPEIDAHNPASICFLKQNGL 120
           ELYADFRFNVNQTKVIQLGVTVSDE GNIGGTWEFNFSDFDPEIDAHNPASICFLKQNGL
Sbjct: 61  ELYADFRFNVNQTKVIQLGVTVSDESGNIGGTWEFNFSDFDPEIDAHNPASICFLKQNGL 120

Query: 121 DFGKLKKDGIKVRKFAIRFLYTLRKHAIYRWITFHGLYDIGYLMLAMGVVKSLPETLGEF 180
           DFGKLKKDGIKVRKFAIRFLYTL KHAIYRW+TFHGLYDIGYLMLAMGVVKSLPETLGEF
Sbjct: 121 DFGKLKKDGIKVRKFAIRFLYTLGKHAIYRWVTFHGLYDIGYLMLAMGVVKSLPETLGEF 180

Query: 181 EWIVARRVGTVRDLKHMARFCEGLEGGNLGLEKLGQLLDQKRFGLKHHAGSDSLMTALLH 240
           +WIVARRVGTVRDLKHMARFCEGLEGGNLGLEKLGQLLDQKRFGLKHHAGSDSLMTALLH
Sbjct: 181 KWIVARRVGTVRDLKHMARFCEGLEGGNLGLEKLGQLLDQKRFGLKHHAGSDSLMTALLH 240

Query: 241 EKMLQRYDFHAEICDGFLYGLSKKFEELVGLQTHRIYVQIQCARVKAMVIHKKMLQLFEV 300
           EKMLQRYDFHAEICDGFLYGLSKKFEELVGLQTHRIYVQIQCARVKAMVIHKKMLQLFEV
Sbjct: 241 EKMLQRYDFHAEICDGFLYGLSKKFEELVGLQTHRIYVQIQCARVKAMVIHKKMLQLFEV 300

Query: 301 ESCNEYELSKKLKEFEVLISHFRFVEHEYETAQFCYYKACNIMYQGFHL 350
           ESCNEYELSKKLKEFEVL SHF+FVEHEYETAQFCYYKACNIMYQGFHL
Sbjct: 301 ESCNEYELSKKLKEFEVLKSHFKFVEHEYETAQFCYYKACNIMYQGFHL 349

[Close]

BLAST of Carg05168 vs. ExPASy TrEMBL
Match: A0A6J1I6H7 (Poly(A)-specific ribonuclease OS=Cucurbita maxima OX=3661 GN=LOC111469633 PE=3 SV=1)

HSP 1 Score: 637.5 bits (1643), Expect = 3.3e-179
Identity = 306/345 (88.70%), Postives = 323/345 (93.62%), Query Frame = 0


Query: 1   MDRIVRGPRGDNPLIREVWAYNLDHEIIRLDRCLVSYSVMSIDTEFPGCIKRTPWGTIDE 60
           MDRIV+GPRGDNPLI EVWAYNLD EI+RLD CL+ Y VMSIDTEFPGCIKRTPWGTIDE
Sbjct: 1   MDRIVQGPRGDNPLITEVWAYNLDDEILRLDHCLLLYPVMSIDTEFPGCIKRTPWGTIDE 60

Query: 61  ELYADFRFNVNQTKVIQLGVTVSDELGNIGGTWEFNFSDFDPEIDAHNPASICFLKQNGL 120
           ELYADFRFNVNQTKVIQLGVTVSDE GNIGGTWEFNFSDFDPEIDAHNPASICFLKQNGL
Sbjct: 61  ELYADFRFNVNQTKVIQLGVTVSDESGNIGGTWEFNFSDFDPEIDAHNPASICFLKQNGL 120

Query: 121 DFGKLKKDGIKVRKFAIRFLYTLRKHAIYRWITFHGLYDIGYLMLAMGVVKSLPETLGEF 180
           DFGKLKKDGIKVRKFAIRFLYT+RKHAI++WITFHGLYDIGYL+LA+GVVKSLPETLGEF
Sbjct: 121 DFGKLKKDGIKVRKFAIRFLYTMRKHAIHQWITFHGLYDIGYLILALGVVKSLPETLGEF 180

Query: 181 EWIVARRVGTVRDLKHMARFCEGLEGGNLGLEKLGQLLDQKRFGLKHHAGSDSLMTALLH 240
           EWIVARRVGTVRDLKHMARFCEGLEGGNLGLEKLGQLLDQKRFGLKHHAGSDSLMTALLH
Sbjct: 181 EWIVARRVGTVRDLKHMARFCEGLEGGNLGLEKLGQLLDQKRFGLKHHAGSDSLMTALLH 240

Query: 241 EKMLQRYDFHAEICDGFLYGLSKKFEELVGLQTHRIYVQIQCARVKAMVIHKKMLQLFEV 300
           EKMLQ YDF+AEICDGFLYGLSKKFEE VG+Q+HRIYVQI+CA VKAMVI KKML+LF  
Sbjct: 241 EKMLQLYDFNAEICDGFLYGLSKKFEEFVGMQSHRIYVQIKCAEVKAMVIRKKMLKLFYA 300

Query: 301 ESCNEYELSKKLKEFEVLISHFRFVEHEYETAQFCYYKACNIMYQ 346
           + C+EYELSKK KEF+VL SH RFV+ E E  QF YYKA NIMYQ
Sbjct: 301 KICDEYELSKKFKEFKVLQSHLRFVQQECEIGQFYYYKASNIMYQ 345

[Close]

BLAST of Carg05168 vs. ExPASy TrEMBL
Match: A0A6J1I4S7 (Poly(A)-specific ribonuclease OS=Cucurbita maxima OX=3661 GN=LOC111469631 PE=3 SV=1)

HSP 1 Score: 635.6 bits (1638), Expect = 1.2e-178
Identity = 305/345 (88.41%), Postives = 323/345 (93.62%), Query Frame = 0


Query: 1   MDRIVRGPRGDNPLIREVWAYNLDHEIIRLDRCLVSYSVMSIDTEFPGCIKRTPWGTIDE 60
           MDRIV+GPRGDNPLI EVWAYNLD EI+RLD CL+ Y VMSIDTEFPGCIKRTPWGTIDE
Sbjct: 1   MDRIVQGPRGDNPLITEVWAYNLDDEILRLDHCLLLYPVMSIDTEFPGCIKRTPWGTIDE 60

Query: 61  ELYADFRFNVNQTKVIQLGVTVSDELGNIGGTWEFNFSDFDPEIDAHNPASICFLKQNGL 120
           ELYADFRFNVNQTKVIQLGVTVSDE G+IGGTWEFNFSDFDPEIDAHNPASICFLKQNGL
Sbjct: 61  ELYADFRFNVNQTKVIQLGVTVSDESGDIGGTWEFNFSDFDPEIDAHNPASICFLKQNGL 120

Query: 121 DFGKLKKDGIKVRKFAIRFLYTLRKHAIYRWITFHGLYDIGYLMLAMGVVKSLPETLGEF 180
           DFGKLKKDGIKVRKFAIRFLYT+RKHAI++WITFHGLYDIGYL+LA+GVVKSLPETLGEF
Sbjct: 121 DFGKLKKDGIKVRKFAIRFLYTMRKHAIHQWITFHGLYDIGYLILALGVVKSLPETLGEF 180

Query: 181 EWIVARRVGTVRDLKHMARFCEGLEGGNLGLEKLGQLLDQKRFGLKHHAGSDSLMTALLH 240
           EWIVARRVGTVRDLKHMARFCEGLEGGNLGLEKLGQLLDQKRFGLKHHAGSDSLMTALLH
Sbjct: 181 EWIVARRVGTVRDLKHMARFCEGLEGGNLGLEKLGQLLDQKRFGLKHHAGSDSLMTALLH 240

Query: 241 EKMLQRYDFHAEICDGFLYGLSKKFEELVGLQTHRIYVQIQCARVKAMVIHKKMLQLFEV 300
           EKMLQ YDF+AEICDGFLYGLSKKFEE VG+Q+HRIYVQI+CA VKAMVI KKML+LF  
Sbjct: 241 EKMLQLYDFNAEICDGFLYGLSKKFEEFVGMQSHRIYVQIKCAEVKAMVIRKKMLKLFYA 300

Query: 301 ESCNEYELSKKLKEFEVLISHFRFVEHEYETAQFCYYKACNIMYQ 346
           + C+EYELSKK KEF+VL SH RFV+ E E  QF YYKA NIMYQ
Sbjct: 301 KICDEYELSKKFKEFKVLQSHLRFVQQECEIGQFYYYKASNIMYQ 345

[Close]

BLAST of Carg05168 vs. ExPASy TrEMBL
Match: A0A6J1I1E6 (putative CCR4-associated factor 1 homolog 8 OS=Cucurbita maxima OX=3661 GN=LOC111469635 PE=4 SV=1)

HSP 1 Score: 634.0 bits (1634), Expect = 3.6e-178
Identity = 305/345 (88.41%), Postives = 322/345 (93.33%), Query Frame = 0


Query: 1   MDRIVRGPRGDNPLIREVWAYNLDHEIIRLDRCLVSYSVMSIDTEFPGCIKRTPWGTIDE 60
           MDRIV+GPRGDNPLI EVWAYNLD EI+RLD CL+ Y VMSIDTEFPGCIKRTPWGTIDE
Sbjct: 1   MDRIVQGPRGDNPLITEVWAYNLDDEILRLDHCLLLYPVMSIDTEFPGCIKRTPWGTIDE 60

Query: 61  ELYADFRFNVNQTKVIQLGVTVSDELGNIGGTWEFNFSDFDPEIDAHNPASICFLKQNGL 120
           ELYADFRFNVNQTKVIQL VTVSDE GNIGGTWEFNFSDFDPEIDAHNPASICFLKQNGL
Sbjct: 61  ELYADFRFNVNQTKVIQLCVTVSDESGNIGGTWEFNFSDFDPEIDAHNPASICFLKQNGL 120

Query: 121 DFGKLKKDGIKVRKFAIRFLYTLRKHAIYRWITFHGLYDIGYLMLAMGVVKSLPETLGEF 180
           DFGKLKKDGIKVRKFAIRFLYT+RKHAI++WITFHGLYDIGYL+LA+GVVKSLPETLGEF
Sbjct: 121 DFGKLKKDGIKVRKFAIRFLYTMRKHAIHQWITFHGLYDIGYLILALGVVKSLPETLGEF 180

Query: 181 EWIVARRVGTVRDLKHMARFCEGLEGGNLGLEKLGQLLDQKRFGLKHHAGSDSLMTALLH 240
           EWIVARRVGTVRDLKHMARFCEGLEGGNLGLEKLGQLLDQKRFGLKHHAGSDSLMTALLH
Sbjct: 181 EWIVARRVGTVRDLKHMARFCEGLEGGNLGLEKLGQLLDQKRFGLKHHAGSDSLMTALLH 240

Query: 241 EKMLQRYDFHAEICDGFLYGLSKKFEELVGLQTHRIYVQIQCARVKAMVIHKKMLQLFEV 300
           EKMLQ YDF+AEICDGFLYGLSKKFEE VG+Q+HRIYVQI+CA VKAMVI KKML+LF  
Sbjct: 241 EKMLQLYDFNAEICDGFLYGLSKKFEEFVGMQSHRIYVQIKCAEVKAMVIRKKMLKLFYA 300

Query: 301 ESCNEYELSKKLKEFEVLISHFRFVEHEYETAQFCYYKACNIMYQ 346
           + C+EYELSKK KEF+VL SH RFV+ E E  QF YYKA NIMYQ
Sbjct: 301 KICDEYELSKKFKEFKVLQSHLRFVQQECEIGQFYYYKASNIMYQ 345

[Close]

BLAST of Carg05168 vs. ExPASy TrEMBL
Match: A0A6J1I3Q4 (Poly(A)-specific ribonuclease OS=Cucurbita maxima OX=3661 GN=LOC111469634 PE=3 SV=1)

HSP 1 Score: 601.3 bits (1549), Expect = 2.6e-168
Identity = 286/317 (90.22%), Postives = 302/317 (95.27%), Query Frame = 0


Query: 1   MDRIVRGPRGDNPLIREVWAYNLDHEIIRLDRCLVSYSVMSIDTEFPGCIKRTPWGTIDE 60
           MDRIV+GPRGDNPLI EVWAYNLD EI+RLD CL+ Y VMSIDTEFPGCIKRTPWGTIDE
Sbjct: 1   MDRIVQGPRGDNPLITEVWAYNLDDEILRLDHCLLLYPVMSIDTEFPGCIKRTPWGTIDE 60

Query: 61  ELYADFRFNVNQTKVIQLGVTVSDELGNIGGTWEFNFSDFDPEIDAHNPASICFLKQNGL 120
           ELYADFRFNVNQTKVIQLGVTVSDE GNIGGTWEFNFSDFDPEIDAHNPASICFLKQNGL
Sbjct: 61  ELYADFRFNVNQTKVIQLGVTVSDESGNIGGTWEFNFSDFDPEIDAHNPASICFLKQNGL 120

Query: 121 DFGKLKKDGIKVRKFAIRFLYTLRKHAIYRWITFHGLYDIGYLMLAMGVVKSLPETLGEF 180
           DFGKLKKDGIKVRKFAIRFLYT+RKHAI++WITFHGLYDIGYL+LA+GVVKSLPETLGEF
Sbjct: 121 DFGKLKKDGIKVRKFAIRFLYTMRKHAIHQWITFHGLYDIGYLILALGVVKSLPETLGEF 180

Query: 181 EWIVARRVGTVRDLKHMARFCEGLEGGNLGLEKLGQLLDQKRFGLKHHAGSDSLMTALLH 240
           EWIVARRVGTVRDLKHMARFCEGLEGGNLGLEKLGQLLDQKRFGLKHHAGSDSLMT LLH
Sbjct: 181 EWIVARRVGTVRDLKHMARFCEGLEGGNLGLEKLGQLLDQKRFGLKHHAGSDSLMTVLLH 240

Query: 241 EKMLQRYDFHAEICDGFLYGLSKKFEELVGLQTHRIYVQIQCARVKAMVIHKKMLQLFEV 300
           EKMLQ YDF+AEICDGFLYGLSKKFEE VG+Q+HRIYVQI+CA VKAMVI KKML+LF  
Sbjct: 241 EKMLQLYDFNAEICDGFLYGLSKKFEEFVGMQSHRIYVQIKCAEVKAMVIRKKMLKLFYA 300

Query: 301 ESCNEYELSKKLKEFEV 318
           + C+EYELSKK KEF+V
Sbjct: 301 KICDEYELSKKFKEFKV 317

[Close]

BLAST of Carg05168 vs. TAIR 10
Match: AT1G06450.1 (Polynucleotidyl transferase, ribonuclease H-like superfamily protein )

HSP 1 Score: 195.7 bits (496), Expect = 6.3e-50
Identity = 106/253 (41.90%), Postives = 145/253 (57.31%), Query Frame = 0


Query: 13  PLIREVWAYNLDHEIIRLDRCLVSYSVMSIDTEFPGCIKRTPWGTIDEELYADFRFNVNQ 72
           PL R VW  N+D E+ R+  CL  + +++ DTE+PG I RT + +  +E Y   + NV  
Sbjct: 7   PLARRVWRSNVDEEMARMAECLKRFPLIAFDTEYPGIIFRTYFDSSSDECYRAMKGNVEN 66

Query: 73  TKVIQLGVTVSDELGNIGGTWEFNFSDFDPEIDAHNPASICFLKQNGLDFGKLKKDGIKV 132
           TK+IQ G T+ +  G IGG WE NFS+F    D  N  SI FL+++GLD  K++ +G+ +
Sbjct: 67  TKLIQCGFTLFNAKGEIGGVWEINFSNFGDPSDTRNELSIEFLRRHGLDLQKIRDEGVDM 126

Query: 133 RKFAI--RFLYTLRKHAIYRWITFHGLYDIGYLMLAMGVVKSLPETLGEFEWIVARRVGT 192
             +    + +   R      ++TF G YD  Y +  +   K LPET GEF   V +  G 
Sbjct: 127 FGYGFFPKLMTVFRSQKHVEFVTFQGAYDFAYFLSILNHGK-LPETHGEFATEVVKVFGQ 186

Query: 193 VRDLKHMARFCEGLEGGNLGLEKLGQLLDQKRFGLKHHAGSDSLMTALLHEKMLQRYDFH 252
           V D K MA FCEGL G +LGL KL QLL   R G  HHAGSDSLMTAL+  K+   Y+  
Sbjct: 187 VYDTKVMAGFCEGL-GEHLGLSKLAQLLQITRVGRAHHAGSDSLMTALVFIKLKHVYE-D 246

Query: 253 AEICDGFLYGLSK 264
           +    G +YG+ K
Sbjct: 247 SRFARGLIYGIGK 256

[Close]

BLAST of Carg05168 vs. TAIR 10
Match: AT1G61470.1 (Polynucleotidyl transferase, ribonuclease H-like superfamily protein )

HSP 1 Score: 182.2 bits (461), Expect = 7.3e-46
Identity = 98/230 (42.61%), Postives = 135/230 (58.70%), Query Frame = 0


Query: 17  EVWAYNLDHEIIRLDRCLVSYSVMSIDTEFPGCIKRTPWGTIDEELYADFRFNVNQTKVI 76
           EVW +N   E+  +  CL   + ++IDTEFPGC+K TP    DE  Y D +FNV+ T +I
Sbjct: 4   EVWRWNKQAEMNSIRDCLKHCNSIAIDTEFPGCLKETPMDASDEIRYRDMKFNVDNTHLI 63

Query: 77  QLGVTVSDELGNIGGTWEFNFSDFDPEIDAHNPASICFLKQNGLDFGKLKKDGIKVRKFA 136
           QLG+T+  +   I  TWE N SDF+      N  SI FLK NGLD  K++++GI + +F 
Sbjct: 64  QLGLTLFGK--GITKTWEINLSDFNESKSLKNDKSIAFLKNNGLDLDKIREEGIGIEEFF 123

Query: 137 IRFLYTL-RKHAIYRWITFHGLYDIGYLMLAMGVVKSLPETLGEFEWIVARRVGT-VRDL 196
           + F   L  KH   RW+TF G YD  YL+  +   K LPET  EF+  V + +G  V D+
Sbjct: 124 MEFSQILNEKHGKMRWVTFQGSYDKAYLLKGL-TRKPLPETSKEFDETVQQLLGRFVYDV 183

Query: 197 KHMARFCEGLEGGNLGLEKLGQLLDQKRFGLKHHAGSDSLMTALLHEKML 245
           K MA  C GL     GL+++  +L  +R G  HHAGSDS +TA +  K++
Sbjct: 184 KKMAGLCSGL-SSRFGLQRIADVLQMRRVGKAHHAGSDSELTARVFTKLI 229

[Close]

BLAST of Carg05168 vs. TAIR 10
Match: AT3G44240.1 (Polynucleotidyl transferase, ribonuclease H-like superfamily protein )

HSP 1 Score: 180.6 bits (457), Expect = 2.1e-45
Identity = 98/219 (44.75%), Postives = 134/219 (61.19%), Query Frame = 0


Query: 30  LDRCLVSYSVMSIDTEFPGCIKRTPWGTIDEELYADFRFNVNQTKVIQLGVTVSDELGNI 89
           ++ CL SY  ++IDTEFP  ++ T     DEE Y D  F+V++ K+IQLG+T+ D  G I
Sbjct: 4   IEDCLRSYRFIAIDTEFPSTLRETTQHATDEERYMDMSFSVDRAKLIQLGLTLFDINGRI 63

Query: 90  GGTWEFNFSDFDPEIDAHNPASICFLKQNGLDFGKLKKDGIKVRKFAIRFLYTLRK-HAI 149
           GGTWE NFSDF  + DA N  SI FL++NGLD  K++++GI++  F     + L+K    
Sbjct: 64  GGTWEINFSDFGVD-DARNEKSIEFLRRNGLDLRKIREEGIRIEGFFSEMFWMLKKTRRN 123

Query: 150 YRWITFHGLYDIGYLMLAMGVVKSLPETLGEFEWIVARRVGTVRDLKHMARFCEGLEGGN 209
             W+TFHG YDI YL+      ++LP T   F   VAR +G+V DLK MA  CEGL    
Sbjct: 124 ITWVTFHGSYDIAYLLKGF-TGEALPVTSERFSKAVARVLGSVYDLKVMAGRCEGL-SSR 183

Query: 210 LGLEKLGQLLDQKRFGLKHHAGSDSLMTALLHEKMLQRY 248
           LGLE L       R G  HHAGS++ +TA++  K+L  +
Sbjct: 184 LGLETLAHEFGLNRVGTAHHAGSNNELTAMVFAKVLSPF 219

[Close]

BLAST of Carg05168 vs. TAIR 10
Match: AT1G27890.1 (Polynucleotidyl transferase, ribonuclease H-like superfamily protein )

HSP 1 Score: 173.7 bits (439), Expect = 2.6e-43
Identity = 96/229 (41.92%), Postives = 131/229 (57.21%), Query Frame = 0


Query: 17  EVWAYNLDHEIIRLDRCLVSYSVMSIDTEFPGCIKRTPWGTIDEELYADFRFNVNQTKVI 76
           EVW +N + E+  +  CL  +S ++IDTEFPGC+K TP    +E  Y D +FNV+ T +I
Sbjct: 3   EVWRWNKEVEMDSIRDCLKHFSSIAIDTEFPGCLKETPMDASEEIRYRDMKFNVDNTHLI 62

Query: 77  QLGVTVSDELGNIGGTWEFNFSDFDPEIDAHNPASICFLKQNGLDFGKLKKDGIKVRKFA 136
           QLG T+ D  G I  TWE N SDF+      N  SI FLK NGL+  K+ ++GI + +F 
Sbjct: 63  QLGFTLFDRRG-ITKTWEINLSDFNEHKCFKNDKSIAFLKSNGLNLDKIGEEGIGIEEFF 122

Query: 137 IRFLYTLR-KHAIYRWITFHGLYDIGYLMLAMGVVKSLPETLGEFEWIVARRVGT-VRDL 196
             F   L+ K     W+ F G YD  YL+  +   K LPET  EF   V + +G  V D+
Sbjct: 123 RDFSQILKEKDGKITWVNFQGSYDNAYLVKGLTGGKPLPETKEEFHETVEQLLGKFVFDV 182

Query: 197 KHMARFCEGLEGGNLGLEKLGQLLDQKRFGLKHHAGSDSLMTALLHEKM 244
           K +A  C GL     GL+++  +L  KR G  HHAGSDS +TA +  K+
Sbjct: 183 KKIAESCSGL-SSRFGLQRIADVLQMKRVGKAHHAGSDSELTARVFTKL 229

[Close]

BLAST of Carg05168 vs. TAIR 10
Match: AT1G27820.1 (Polynucleotidyl transferase, ribonuclease H-like superfamily protein )

HSP 1 Score: 172.9 bits (437), Expect = 4.4e-43
Identity = 96/229 (41.92%), Postives = 129/229 (56.33%), Query Frame = 0


Query: 17  EVWAYNLDHEIIRLDRCLVSYSVMSIDTEFPGCIKRTPWGTIDEELYADFRFNVNQTKVI 76
           EVW +N + E+  +  CL   S ++IDTEFPGC+K TP    +E  Y D +FNV+ T +I
Sbjct: 8   EVWRWNKEVEMNSIRDCLKHCSSIAIDTEFPGCLKETPMDASEEIRYRDMKFNVDNTHLI 67

Query: 77  QLGVTVSDELGNIGGTWEFNFSDFDPEIDAHNPASICFLKQNGLDFGKLKKDGIKVRKFA 136
           QLG T+ D  G    TWE N SDFD      N  SI FLK NGL+  K++++GI + +F 
Sbjct: 68  QLGFTLFDRRG-FAKTWEINLSDFDEHKCFKNDKSIAFLKSNGLNLDKIREEGIGIDEFF 127

Query: 137 IRFLYTL-RKHAIYRWITFHGLYDIGYLMLAMGVVKSLPETLGEFEWIVARRVGT-VRDL 196
             F   L  K     W+ F G YD  YL+  +   K LPET  EF   V + +G  V D+
Sbjct: 128 RDFSQILTEKDGKITWVNFQGSYDNAYLVKGLTGGKPLPETKEEFHETVQQLLGKFVFDV 187

Query: 197 KHMARFCEGLEGGNLGLEKLGQLLDQKRFGLKHHAGSDSLMTALLHEKM 244
           K +A  C GL     GL+++  +L  KR G  HHAGSDS +TA +  K+
Sbjct: 188 KKIAESCSGL-SSQFGLQRIADVLQMKRVGKAHHAGSDSELTARVFTKL 234

The following BLAST results are available for this feature:

BLAST of Carg05168 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG7027009.1	1.1e-205	100.00	putative CCR4-associated factor 1-like 1, partial [Cucurbita argyrosperma subsp....	[more]
KAG6604930.1	1.9e-205	99.71	putative CCR4-associated factor 1-like 1, partial [Cucurbita argyrosperma subsp....	[more]
XP_022947868.1	1.7e-201	97.42	putative CCR4-associated factor 1 homolog 8 [Cucurbita moschata]	[more]
XP_023533172.1	1.8e-200	96.85	putative CCR4-associated factor 1 homolog 8 [Cucurbita pepo subsp. pepo]	[more]
XP_022970734.1	6.8e-179	88.70	putative CCR4-associated factor 1 homolog 8 [Cucurbita maxima] >XP_022970738.1 p...	[more]

BLAST of Carg05168 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9SHJ0	8.9e-49	41.90	Probable CCR4-associated factor 1 homolog 1 OS=Arabidopsis thaliana OX=3702 GN=C...	[more]
O64773	1.0e-44	42.61	Probable CCR4-associated factor 1 homolog 5 OS=Arabidopsis thaliana OX=3702 GN=C...	[more]
Q9LXM4	3.0e-44	44.75	Putative CCR4-associated factor 1 homolog 8 OS=Arabidopsis thaliana OX=3702 GN=C...	[more]
Q9C6M9	3.6e-42	41.92	Putative CCR4-associated factor 1 homolog 4 OS=Arabidopsis thaliana OX=3702 GN=C...	[more]
Q9SFX6	6.2e-42	41.92	Putative CCR4-associated factor 1 homolog 3 OS=Arabidopsis thaliana OX=3702 GN=C...	[more]

BLAST of Carg05168 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1G7T4	8.0e-202	97.42	Poly(A)-specific ribonuclease OS=Cucurbita moschata OX=3662 GN=LOC111451626 PE=3...	[more]
A0A6J1I6H7	3.3e-179	88.70	Poly(A)-specific ribonuclease OS=Cucurbita maxima OX=3661 GN=LOC111469633 PE=3 S...	[more]
A0A6J1I4S7	1.2e-178	88.41	Poly(A)-specific ribonuclease OS=Cucurbita maxima OX=3661 GN=LOC111469631 PE=3 S...	[more]
A0A6J1I1E6	3.6e-178	88.41	putative CCR4-associated factor 1 homolog 8 OS=Cucurbita maxima OX=3661 GN=LOC11...	[more]
A0A6J1I3Q4	2.6e-168	90.22	Poly(A)-specific ribonuclease OS=Cucurbita maxima OX=3661 GN=LOC111469634 PE=3 S...	[more]

BLAST of Carg05168 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G06450.1	6.3e-50	41.90	Polynucleotidyl transferase, ribonuclease H-like superfamily protein	[more]
AT1G61470.1	7.3e-46	42.61	Polynucleotidyl transferase, ribonuclease H-like superfamily protein	[more]
AT3G44240.1	2.1e-45	44.75	Polynucleotidyl transferase, ribonuclease H-like superfamily protein	[more]
AT1G27890.1	2.6e-43	41.92	Polynucleotidyl transferase, ribonuclease H-like superfamily protein	[more]
AT1G27820.1	4.4e-43	41.92	Polynucleotidyl transferase, ribonuclease H-like superfamily protein	[more]

InterPro

Analysis Name: InterPro Annotations of Silver-seed gourd (SMH-JMG-627) v2
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR006941	Ribonuclease CAF1	PFAM	PF04857	CAF1	coord: 21..131 e-value: 7.8E-6 score: 25.4
IPR036397	Ribonuclease H superfamily	GENE3D	3.30.420.10		coord: 5..265 e-value: 1.4E-62 score: 213.2
IPR039637	CCR4-NOT transcription complex subunit 7/8/Pop2	PANTHER	PTHR10797	CCR4-NOT TRANSCRIPTION COMPLEX SUBUNIT	coord: 13..282
None	No IPR available	PANTHER	PTHR10797:SF57	CCR4-ASSOCIATED FACTOR 1 HOMOLOG 3-RELATED	coord: 13..282
IPR012337	Ribonuclease H-like superfamily	SUPERFAMILY	53098	Ribonuclease H-like	coord: 15..250

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Carg05168-RA	Carg05168-RA	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006402	mRNA catabolic process
biological_process	GO:0090503	RNA phosphodiester bond hydrolysis, exonucleolytic
cellular_component	GO:0030014	CCR4-NOT complex
cellular_component	GO:0005737	cytoplasm
cellular_component	GO:0005634	nucleus
molecular_function	GO:0003676	nucleic acid binding
molecular_function	GO:0004535	poly(A)-specific ribonuclease activity