Carg05139 (gene) Silver-seed gourd (SMH-JMG-627) v2

Overview
NameCarg05139
Typegene
OrganismCucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
DescriptionUnknown protein
LocationCarg_Chr07: 3116460 .. 3118748 (-)
RNA-Seq ExpressionCarg05139
SyntenyCarg05139
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGATCCCTAAAGATTATGAGGACGAGAGTGGGGACCATGAACCCGAAAGGAGTGTAAAAAGTTGGGAAGAGGTTATATCGCTTTTGGAATGGGCGGTGAGCTGGCCCACCCACGTGGATCCCACCTTCCACATATGGAGCTTCCACCAAATGAACTCGCGACACGTGGCAGACATGGTCACTGCTGACAAGCCCACCCTGTGCTTCTGATTGGATCATTTGGATTCGAATCAGCCTGGGTTTGTTCCTAACCGTACCATGGTTAATCATGGAGTCGTTGAAACTGGAGGGCAGCCAAAAGAGAATTCCCCCTAGAGCTAATTGAATAGAGGTTAATGTGAGTGTTAGTTGAGTCATGACATGAACGAAATGATATCTTTTACCAAACAAGTTAGCTCGACGACTACAGTAAAAACCTGTACTCTTAGTGATAAGAACTCGATTGGGTTTCTATCTTATGAGTTTACACTAAGAATCTGGGAACGATTTTTATGAATGTATGAACTTTGGTTTGTGTATCTAGAAATGGGGTTCTTCTAGTTAGAACTAATTCGATGGCTTTTGTGCATTTCAGGAATATGACAGAACAAAAAATGAAACTTTATGTGGTTTTCTTGTTTCATGTTTTTGACTACTCCTCTTTTGCTCTTCATCGGTGTGTGCTCACTCGGATTGCTGCTAAGCCTTCTCCGACACCGGCACCGGCACCGGTTTGTGAGCATGTTAATCTCACTGACTTGTTTATTGTAGCGGGCCCATTTCATCCCATAACGATTCTGAAGAGGGAGTAATTGTAATAACCCCACTGCTAGCAGATATTATTCTCTTTTAGTTTTCTCTTTCGGGCTTTCCTTCAAGGATTTTAAAAAGTGTCTGTTAGGGAGAGATTCTTCAAGGATTTTAAAAAGTTTCTGTTAGGGAGAGATTTTCATACCCTTATAAAGAATATTTAGTTCTCCTCCCCAACTGATGTGGGATCTCACATTCCACCCCCTTTGGGGCCCAACATCCTTGTTGGCTCCCCAACTGATGTGAGATCTCACATTCTACCATGGCCCAACGTCCTTGCTAGCACACCTCCTTGTGTCCTTCCCCTTCGGAATTCAACCTCCTCGCTGACACATCATGCAATGTCTGATTCTAATACCATTTGTAATGGTTCAAGCCCACTGCTTGCAGATATTATCCTCTTTGAGCCTGTAGCAATTAACATTGCTACAGTAACCATTTGTACCAAAGGATAGTGCATTTTCATCACTCGGAAACCTTCTCCATCCAGTTTAACCAAGGAACAGCTTAAGTCACTGCTGCTCTTTCATAGCTTACCACATTACTACACTCTAGCTGATTTCAACGACCTTACCCAAAAGAGCCCCATTACTACATATGATAGTGAGCAGTACAGTTAGATTTTTACCGATGCATCCGGCACCGTGCACATTAGCTCTGGCTGGACCGACACGAAAGTGAGTAGCAGCATGCTTTCAACCTATCCCGTTTGCCGTTAACCAACTCGATCGTGTACTACTTCCAGAGGCAATTTTCTGATATCCCTCCCACCCCATCTCCAGTTCTGAGCCCGACATCGCTCCTGCTGCCGATACTACCGACGGGAAGGCTTCACCATCATTGGTAGATTCGCCCTCCTTTTCGTTTAGGATTGCCCGAGGGGGCCTCCGGAGTCAGTTGGCTTTAGCAGCTCCTGTTTTAGTGAGGAAGGATAAAGAGGATGTAGTTTTACTACAGTTCCTAAGACAAGTTTTCTTCAGTGATCAAGTAAAAATTTATTATAGCACAGGCTGTTGTAATATATTACAAAAAATGAAACGCCTAAGAACAAACTTATGGTTCAATGATCAAGCAACTAAAGTTACAAAAACCCCAACAAAATTCTCCAATTCTAAACTAGAAAGTATAATTCAGATGGGTGTAGGATGGTTACCGGTCTCATTTTCTCGTTCTGCTACGAGCATTAGCATCTCGAGACGCTTATCGAAGAGTAGAGCACTTTCGTCTCTCTTATCAAGCTCAGCAGCTTCAGCTTCAAGCCATTTTTCTCGTAGATCATCAAGAACGTTGCCTTGATCGATATTAACAGCAGCTCCTGGAGCGCTCGGAGCTGTTGTACGGAGCGAGGAATCCCCAGATGGTGGAGGAAGGGTCAATAGCATCTCTCTGAACTCTCGAGTATCGGCGAATGTCTCGAAATTGCAAGCTATTGTATCCAAACAATACTCGCGTATCTTGATAACACCATACCTGGAAAGGAGAAGAGCAATGATTTCATAA

mRNA sequence

ATGATCCCTAAAGATTATGAGGACGAGAGTGGGGACCATGAACCCGAAAGGAGTGTAAAAAGTTGGGAAGAGGTTATATCGCTTTTGGAATGGGCGGTGAGCTGGCCCACCCACGTGGATCCCACCTTCCACATATGGAGCTTCCACCAAATGAACTCGCGACACGTGGCAGACATGGTCACTGCTGACAAGCCCACCCTTTCTGAGCCCGACATCGCTCCTGCTGCCGATACTACCGACGGGAAGGCTTCACCATCATTGGTAGATTCGCCCTCCTTTTCGTTTAGGATTGCCCGAGGGGGCCTCCGGAGTCAGTTGGCTTTAGCAGCTCCTGTTTTAGTGAGGAAGGATAAAGAGGATGTAGTTTTACTACAGTTCCTAAGACAAGTTTTCTTCAGTGATCAAGATGGTTACCGGTCTCATTTTCTCGTTCTGCTACGAGCATTAGCATCTCGAGACGCTTATCGAAGAGTAGAGCACTTTCGTCTCTCTTATCAAGCTCAGCAGCTTCAGCTTCAAGCCATTTTTCTCGTAGATCATCAAGAACCAGCTCCTGGAGCGCTCGGAGCTGTTGTACGGAGCGAGGAATCCCCAGATGGTGGAGGAAGGGTCAATAGCATCTCTCTGAACTCTCGAGTATCGGCGAATGTCTCGAAATTGCAAGCTATTGTATCCAAACAATACTCGCGTATCTTGATAACACCATACCTGGAAAGGAGAAGAGCAATGATTTCATAA

Coding sequence (CDS)

ATGATCCCTAAAGATTATGAGGACGAGAGTGGGGACCATGAACCCGAAAGGAGTGTAAAAAGTTGGGAAGAGGTTATATCGCTTTTGGAATGGGCGGTGAGCTGGCCCACCCACGTGGATCCCACCTTCCACATATGGAGCTTCCACCAAATGAACTCGCGACACGTGGCAGACATGGTCACTGCTGACAAGCCCACCCTTTCTGAGCCCGACATCGCTCCTGCTGCCGATACTACCGACGGGAAGGCTTCACCATCATTGGTAGATTCGCCCTCCTTTTCGTTTAGGATTGCCCGAGGGGGCCTCCGGAGTCAGTTGGCTTTAGCAGCTCCTGTTTTAGTGAGGAAGGATAAAGAGGATGTAGTTTTACTACAGTTCCTAAGACAAGTTTTCTTCAGTGATCAAGATGGTTACCGGTCTCATTTTCTCGTTCTGCTACGAGCATTAGCATCTCGAGACGCTTATCGAAGAGTAGAGCACTTTCGTCTCTCTTATCAAGCTCAGCAGCTTCAGCTTCAAGCCATTTTTCTCGTAGATCATCAAGAACCAGCTCCTGGAGCGCTCGGAGCTGTTGTACGGAGCGAGGAATCCCCAGATGGTGGAGGAAGGGTCAATAGCATCTCTCTGAACTCTCGAGTATCGGCGAATGTCTCGAAATTGCAAGCTATTGTATCCAAACAATACTCGCGTATCTTGATAACACCATACCTGGAAAGGAGAAGAGCAATGATTTCATAA

Protein sequence

MIPKDYEDESGDHEPERSVKSWEEVISLLEWAVSWPTHVDPTFHIWSFHQMNSRHVADMVTADKPTLSEPDIAPAADTTDGKASPSLVDSPSFSFRIARGGLRSQLALAAPVLVRKDKEDVVLLQFLRQVFFSDQDGYRSHFLVLLRALASRDAYRRVEHFRLSYQAQQLQLQAIFLVDHQEPAPGALGAVVRSEESPDGGGRVNSISLNSRVSANVSKLQAIVSKQYSRILITPYLERRRAMIS
Homology
[Close]
BLAST of Carg05139 vs. NCBI nr
Match: KAG7026981.1 (hypothetical protein SDJN02_10989, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 474.9 bits (1221), Expect = 4.1e-130
Identity = 245/245 (100.00%), Postives = 245/245 (100.00%), Query Frame = 0 

Query: 1   MIPKDYEDESGDHEPERSVKSWEEVISLLEWAVSWPTHVDPTFHIWSFHQMNSRHVADMV 60
           MIPKDYEDESGDHEPERSVKSWEEVISLLEWAVSWPTHVDPTFHIWSFHQMNSRHVADMV
Sbjct: 1   MIPKDYEDESGDHEPERSVKSWEEVISLLEWAVSWPTHVDPTFHIWSFHQMNSRHVADMV 60

Query: 61  TADKPTLSEPDIAPAADTTDGKASPSLVDSPSFSFRIARGGLRSQLALAAPVLVRKDKED 120
           TADKPTLSEPDIAPAADTTDGKASPSLVDSPSFSFRIARGGLRSQLALAAPVLVRKDKED
Sbjct: 61  TADKPTLSEPDIAPAADTTDGKASPSLVDSPSFSFRIARGGLRSQLALAAPVLVRKDKED 120

Query: 121 VVLLQFLRQVFFSDQDGYRSHFLVLLRALASRDAYRRVEHFRLSYQAQQLQLQAIFLVDH 180
           VVLLQFLRQVFFSDQDGYRSHFLVLLRALASRDAYRRVEHFRLSYQAQQLQLQAIFLVDH
Sbjct: 121 VVLLQFLRQVFFSDQDGYRSHFLVLLRALASRDAYRRVEHFRLSYQAQQLQLQAIFLVDH 180

Query: 181 QEPAPGALGAVVRSEESPDGGGRVNSISLNSRVSANVSKLQAIVSKQYSRILITPYLERR 240
           QEPAPGALGAVVRSEESPDGGGRVNSISLNSRVSANVSKLQAIVSKQYSRILITPYLERR
Sbjct: 181 QEPAPGALGAVVRSEESPDGGGRVNSISLNSRVSANVSKLQAIVSKQYSRILITPYLERR 240

Query: 241 RAMIS 246
           RAMIS
Sbjct: 241 RAMIS 245

The following BLAST results are available for this feature:
BLAST of Carg05139 vs. NCBI nr
Match NameE-valueIdentityDescription
KAG7026981.14.1e-130100.00hypothetical protein SDJN02_10989, partial [Cucurbita argyrosperma subsp. argyro... [more]
BLAST of Carg05139 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of Carg05139 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of Carg05139 vs. NCBI nr
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Silver-seed gourd (SMH-JMG-627) v2
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 67..87

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Carg05139-RACarg05139-RAmRNA