Carg05055 (gene) Silver-seed gourd (SMH-JMG-627) v2

Overview


Name	Carg05055
Type	gene
Organism	Cucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
Description	Wound-induced basic
Location	Carg_Chr08: 1290836 .. 1294006 (-)
RNA-Seq Expression	Carg05055
Synteny	Carg05055

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTGCTGGGCGGCCCAATATGGTTCTATAAAAGCTGAAGCATTCGTGTTCGGCGCCTGTTCGCGGCATTTGCGATTGGGATTTTATTCAAAAGCTCAGACGCGCAGCAAATTAGGGTTTCGATCTGTGAAGGCTCAAAATTCATCACCGAGATCGATCATGATTTACGACGTTAACTCCTCTCTCTTCCGCTCCTTCCTCAGCCAGAAAGGAGGCTCTTCCGACAGGTGGTATTCTCCTCTATTTTAACACTCTATTGTTGTGTTCTTGTATCAATCGCACGAGTGCTAGAATTCTGTATCTTTCTTAGTAGGTTGGGATTTGAATGCACCTATCTAAGAGAGTTTTAGAGTTTGTTAGAGTTTTCGAGACAAGTTTGTAAGAATACTAGAAACTATTCATTTGGGAGCTTTATCTTTCATTTTTAGAAATTAGAAATTATGTTTGATACTCACTCTTAAATTGTAAGTTGAAAGATTCTTAAACTTCGTCGATGTAAATGTAATGGACATATTGTAATGATCATGGTTGATCGAGTATGAAGACTGGATTCTTGGTCATTGCAAATTTTGGGGCATGTTGTCTGAAAATATATATTTTTTGGCTACTCCTTTTAGAAAATTTTAAGAATCCCCCTTAGTCAAACAACTTCACAATCTCTGACAAATGGTCAGAACTTCATATGGGTTCGAATCCTATTGAGAGGTTCACTAGAGATCAGAAATTGTTGAAGAAAGAACAAGATGTTTCTTTTGTCCCTTCCCGGCGATCAACTTAGTTGTGTATATAAATTCTACGTCGGGTAAAGAAAGTGCTTTGTCTTCTCGTTGTCTTCGACTCCTAAAATATTCGGTTTGTGATCATAAGCATAAGATGTAGTTTGAAGTGCTTCTTTAATCATCAAGAGAACTTGTCTAATGATTTTTTGTGTAGCCTACCTGCTTATCATCTCTCTCTCTTCCATTCTTGAGCCTGAAACTTCTAATCTGTTTTCAGAAGGTTTGGGGATCTGAAAATGCATTAAAGTAACAATCTTTAGATGGATGGTTTCTTTTAAGAGGGATGGAGAAGACGTAGGAGGAGACGTGGGAGTTTGTGAGGTTTAATGCATCTTTGTAGGCATCTGTTAAATGGACAATTTTGTAGTTATCAGCTTGGTGTCATTCTTTTGGATTGCAGTCCATTCCTGTAGCTAGTTGCCTAGTTGAGGAGGACCCTTTTTGTTGACTTGTTTTTGTATGACCTTGTTATTTCTTTCATTTATCTCAAAGAAAGCTTGGTGTCTTACCCCCCAGAAAAAGAGAGTCAAAACTGTCAAACTTGGGATTTGATCTTTTCTCATGCCGAGTTTCCTTGTCTTGTTGTTTTTTATGCTACCTTTTGTTTCTTAATTTTGCGATAAATTTCACCATTTTCTTGTTAATCTTCTTTTTCTGTAATACTTAGCTTGCAATGATAGACTCGCTACATAATTAACTTGGAAACCTATTCGTTCTGTCTGACTGAGCTTCAAGTCAACCTCAATTTAATCTTCGGGCTTTTGTGGTTGCAATGCAACCATGTAATTAAATCTTGAATGTGAAGCACATACATTTGAGCTTGGATAGTGTATCAATGTCCAACATATATTTGGCACACTTCAACACCTATTGAACACATGTCAGAGGCTTTTTATGGACGTGCCAAACATTTATTAAACATGATGGACATGTATTAAGGTGAACAATTGTCAGACGTGTAGAAGGACACTTGTATTTAAGGACTTTAAAAAATGTACATGAGATAAGAAGTATTTGACTTGTTTTCTAAGGCATATGAATGCATATGCATTATTGACTTTAAACTTAACGTAGAAAAATGTTGGGTTGGGTTTTGTTTATGAATGTTTTCTTGTAAATTACTACATGATCAGAAGTTGGTGATTAGTTTCTTCAACCTTTGTAACCATTACATATTTACAATTATTATTGGAAAATCGACAAAAATGTGGACTTATTTACAACTTGCTGAATGATACAAAGCGTTGAACCATTTTTCTTTCAGTTCTTATTGAAATCCATCCATTGATCCTGAAATATTTTTTTTCCATTCTTTATATCCCTTGATGTGCCGTAATTTGTTGCATTACCTAGCTTAGAAACTGGTGTTTTTTCTACATGCTTCTTGTGCCACGTAAGCTTCTCTTGAGATTTGACCTGATGAGAGTGAGGTTAAGGGCTTATGATGTTCTTCAGCGTTTAATCTTTGTCTGAATTGAATGGTTTAGGAAAATGGAGCAGAAGCCGAAAGAACAGAGACCAAAAGCCAGTGAGAATAAGCCTGTTATGTCAGAATGAGAATGAGTTGTTTAAATCCTTACTGATTCTCTTCCGTTTTAGTAAAGTTCTTAAAAATTAAACACAAAAATGGAGTTTGGTTGAAGTTGTAGAATAGACAGATTCCATGGACTTGACCTCAAATAGTTCCAATTGCAACTGGAGCACAGGCTTGGCTTCTTAGTTAACAATTAAAGGGCAGGGTGGAACCTTTAACTTTAAGTAAGGTAGTTAATGTCTTATCTAAGATGAGTTGACTCTTTGAGGTATTATTGCTTAGATGTTTCAACTTTCGTGCAGGTGGGTGTCAAAGCAAGTGATGAAAGAGAAGTGAAGACCGAACAGTTTAGAGGTCGATTGATCCGACTCCCAAAAGTTGTGGCGACAAAGCTCGCACTCCATCGTCTATCTAGCGATGGAGGAAGGAAGTTGTTCTTGCGAGACTAAGAAAGAAAGGGGAGAGAGTTTGAGCCATACAATTTTGACACCAGAAAGGCAGAAACTTTTGCCCCAATTCGAAAGGTGGACAATCTCTTTTATCTTATCTCCATCTGCAATATTTATTACTTCCAAAACTGATATATCATTCATTTATTACTTTCAGAAATTTATCTATGGATGCTATTTTGTGCCCTCTCTTTTCTTCTTGGGGTGTGCTGCCAAAGTTGGGTTAGGGATGTCATGTCAATCATTCCATATTTTCGAGTTTGTTCCTAAGTTCCTCAACCTGACCAACCTGACTAGACTGGTTAACCCAATCCGACCCATTCCATCCCTCGTATCACGAAATTGGGTCTTGGGGTTTAACACTTTTGACTCAACAAATTTTAATGGAGAGGCAAGGCAAGATGACTCA

mRNA sequence

ATGTGCTGGGCGGCCCAATATGGTTCTATAAAAGCTGAAGCATTCGTGTTCGGCGCCTGTTCGCGGCATTTGCGATTGGGATTTTATTCAAAAGCTCAGACGCGCAGCAAATTAGGGTTTCGATCTGTGAAGGCTCAAAATTCATCACCGAGATCGATCATGATTTACGACGTTAACTCCTCTCTCTTCCGCTCCTTCCTCAGCCAGAAAGGAGGCTCTTCCGACAGGAAAATGGAGCAGAAGCCGAAAGAACAGAGACCAAAAGCCAGTGAGAATAAGCCTGTGGGTGTCAAAGCAAGTGATGAAAGAGAAGTGAAGACCGAACAGTTTAGAGGTCGATTGATCCGACTCCCAAAAGTTGTGGCGACAAAGCTCGCACTCCATCGTCTATCTAGCGATGGAGGAAGGAAGTTGTTCTTGCGAGACTAAGAAAGAAAGGGGAGAGAGTTTGAGCCATACAATTTTGACACCAGAAAGGCAGAAACTTTTGCCCCAATTCGAAAGGTGGACAATCTCTTTTATCTTATCTCCATCTGCAATATTTATTACTTCCAAAACTGATATATCATTCATTTATTACTTTCAGAAATTTATCTATGGATGCTATTTTGTGCCCTCTCTTTTCTTCTTGGGGTGTGCTGCCAAAGTTGGGTTAGGGATGTCATGTCAATCATTCCATATTTTCGAGTTTGTTCCTAAGTTCCTCAACCTGACCAACCTGACTAGACTGGTTAACCCAATCCGACCCATTCCATCCCTCGTATCACGAAATTGGGTCTTGGGGTTTAACACTTTTGACTCAACAAATTTTAATGGAGAGGCAAGGCAAGATGACTCA

Coding sequence (CDS)

ATGTGCTGGGCGGCCCAATATGGTTCTATAAAAGCTGAAGCATTCGTGTTCGGCGCCTGTTCGCGGCATTTGCGATTGGGATTTTATTCAAAAGCTCAGACGCGCAGCAAATTAGGGTTTCGATCTGTGAAGGCTCAAAATTCATCACCGAGATCGATCATGATTTACGACGTTAACTCCTCTCTCTTCCGCTCCTTCCTCAGCCAGAAAGGAGGCTCTTCCGACAGGAAAATGGAGCAGAAGCCGAAAGAACAGAGACCAAAAGCCAGTGAGAATAAGCCTGTGGGTGTCAAAGCAAGTGATGAAAGAGAAGTGAAGACCGAACAGTTTAGAGGTCGATTGATCCGACTCCCAAAAGTTGTGGCGACAAAGCTCGCACTCCATCGTCTATCTAGCGATGGAGGAAGGAAGTTGTTCTTGCGAGACTAA

Protein sequence

MCWAAQYGSIKAEAFVFGACSRHLRLGFYSKAQTRSKLGFRSVKAQNSSPRSIMIYDVNSSLFRSFLSQKGGSSDRKMEQKPKEQRPKASENKPVGVKASDEREVKTEQFRGRLIRLPKVVATKLALHRLSSDGGRKLFLRD

Homology

[Close]

BLAST of Carg05055 vs. NCBI nr
Match: KAG7025423.1 (Wound-induced basic protein, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 274.2 bits (700), Expect = 6.1e-70
Identity = 142/142 (100.00%), Postives = 142/142 (100.00%), Query Frame = 0


Query: 1   MCWAAQYGSIKAEAFVFGACSRHLRLGFYSKAQTRSKLGFRSVKAQNSSPRSIMIYDVNS 60
           MCWAAQYGSIKAEAFVFGACSRHLRLGFYSKAQTRSKLGFRSVKAQNSSPRSIMIYDVNS
Sbjct: 1   MCWAAQYGSIKAEAFVFGACSRHLRLGFYSKAQTRSKLGFRSVKAQNSSPRSIMIYDVNS 60

Query: 61  SLFRSFLSQKGGSSDRKMEQKPKEQRPKASENKPVGVKASDEREVKTEQFRGRLIRLPKV 120
           SLFRSFLSQKGGSSDRKMEQKPKEQRPKASENKPVGVKASDEREVKTEQFRGRLIRLPKV
Sbjct: 61  SLFRSFLSQKGGSSDRKMEQKPKEQRPKASENKPVGVKASDEREVKTEQFRGRLIRLPKV 120

Query: 121 VATKLALHRLSSDGGRKLFLRD 143
           VATKLALHRLSSDGGRKLFLRD
Sbjct: 121 VATKLALHRLSSDGGRKLFLRD 142

[Close]

BLAST of Carg05055 vs. NCBI nr
Match: XP_022960021.1 (wound-induced basic protein-like isoform X2 [Cucurbita moschata])

HSP 1 Score: 76.6 bits (187), Expect = 1.9e-10
Identity = 42/43 (97.67%), Postives = 42/43 (97.67%), Query Frame = 0


Query: 54 MIYDVNSSLFRSFLSQKGGSSDR-KMEQKPKEQRPKASENKPV 96
          MIYDVNSSLFRSFLSQKGGSSDR KMEQKPKEQRPKASENKPV
Sbjct: 1  MIYDVNSSLFRSFLSQKGGSSDRWKMEQKPKEQRPKASENKPV 43

[Close]

BLAST of Carg05055 vs. NCBI nr
Match: KAF9688417.1 (hypothetical protein SADUNF_Sadunf02G0195100 [Salix dunnii])

HSP 1 Score: 76.3 bits (186), Expect = 2.4e-10
Identity = 52/76 (68.42%), Postives = 54/76 (71.05%), Query Frame = 0


Query: 22 RHLRLGFYSKAQTRSKLGFRSVKAQNSSPRSIMIYDVNSSLFRSFLSQKGGSSD-RKM-E 81
          R  R G  SKA+        SVKA NS     MIYDVNS LFRSFLSQKGGSSD RKM E
Sbjct: 17 RSYRKGRRSKARV-------SVKASNSLTVDNMIYDVNSPLFRSFLSQKGGSSDKRKMEE 76

Query: 82 QKPKEQRPKASENKPV 96
          QKPKEQRPKA+ENKPV
Sbjct: 77 QKPKEQRPKANENKPV 85

[Close]

BLAST of Carg05055 vs. NCBI nr
Match: XP_034916000.1 (LOW QUALITY PROTEIN: wound-induced basic protein [Populus alba])

HSP 1 Score: 75.5 bits (184), Expect = 4.2e-10
Identity = 46/56 (82.14%), Postives = 47/56 (83.93%), Query Frame = 0


Query: 42 SVKAQNSSPRSIMIYDVNSSLFRSFLSQKGGSSD-RKM-EQKPKEQRPKASENKPV 96
          SVKA NS     MIYDVNS LFRSFLSQKGGSSD RKM EQKPKEQRPKA+ENKPV
Sbjct: 18 SVKANNSLTVDKMIYDVNSPLFRSFLSQKGGSSDKRKMEEQKPKEQRPKANENKPV 73

[Close]

BLAST of Carg05055 vs. NCBI nr
Match: KAG6785373.1 (hypothetical protein POTOM_011103 [Populus tomentosa])

HSP 1 Score: 75.5 bits (184), Expect = 4.2e-10
Identity = 46/56 (82.14%), Postives = 47/56 (83.93%), Query Frame = 0


Query: 42 SVKAQNSSPRSIMIYDVNSSLFRSFLSQKGGSSD-RKM-EQKPKEQRPKASENKPV 96
          SVKA NS     MIYDVNS LFRSFLSQKGGSSD RKM EQKPKEQRPKA+ENKPV
Sbjct: 18 SVKASNSLTVDNMIYDVNSPLFRSFLSQKGGSSDKRKMEEQKPKEQRPKANENKPV 73

[Close]

BLAST of Carg05055 vs. ExPASy Swiss-Prot
Match: Q09020 (Wound-induced basic protein OS=Phaseolus vulgaris OX=3885 GN=PR4 PE=2 SV=1)

HSP 1 Score: 67.4 bits (163), Expect = 1.5e-10
Identity = 36/44 (81.82%), Postives = 39/44 (88.64%), Query Frame = 0


Query: 54 MIYDVNSSLFRSFLSQKGGSSDRKM--EQKPKEQRPKASENKPV 96
          MIYDVNS LFRSFLSQKGGSSD++   EQKPKE RPKASENKP+
Sbjct: 1  MIYDVNSPLFRSFLSQKGGSSDKRKTEEQKPKEHRPKASENKPI 44

[Close]

BLAST of Carg05055 vs. ExPASy TrEMBL
Match: A0A6J1H6H7 (wound-induced basic protein-like isoform X2 OS=Cucurbita moschata OX=3662 GN=LOC111460896 PE=4 SV=1)

HSP 1 Score: 76.6 bits (187), Expect = 9.1e-11
Identity = 42/43 (97.67%), Postives = 42/43 (97.67%), Query Frame = 0


Query: 54 MIYDVNSSLFRSFLSQKGGSSDR-KMEQKPKEQRPKASENKPV 96
          MIYDVNSSLFRSFLSQKGGSSDR KMEQKPKEQRPKASENKPV
Sbjct: 1  MIYDVNSSLFRSFLSQKGGSSDRWKMEQKPKEQRPKASENKPV 43

[Close]

BLAST of Carg05055 vs. ExPASy TrEMBL
Match: A0A6N2LGA5 (Uncharacterized protein OS=Salix viminalis OX=40686 GN=SVIM_LOCUS214898 PE=4 SV=1)

HSP 1 Score: 75.9 bits (185), Expect = 1.5e-10
Identity = 49/68 (72.06%), Postives = 51/68 (75.00%), Query Frame = 0


Query: 30 SKAQTRSKLGFRSVKAQNSSPRSIMIYDVNSSLFRSFLSQKGGSSD-RKM-EQKPKEQRP 89
          S  Q R +    SVKA NS     MIYDVNS LFRSFLSQKGGSSD RKM EQKPKEQRP
Sbjct: 6  SHRQGRRRKARVSVKASNSLTVDNMIYDVNSPLFRSFLSQKGGSSDKRKMEEQKPKEQRP 65

Query: 90 KASENKPV 96
          KA+ENKPV
Sbjct: 66 KANENKPV 73

[Close]

BLAST of Carg05055 vs. ExPASy TrEMBL
Match: A0A0B0NB31 (Wound-induced basic OS=Gossypium arboreum OX=29729 GN=LOC108471243 PE=4 SV=1)

HSP 1 Score: 71.2 bits (173), Expect = 3.8e-09
Identity = 39/43 (90.70%), Postives = 40/43 (93.02%), Query Frame = 0


Query: 54 MIYDVNSSLFRSFLSQKGGSSDRKM-EQKPKEQRPKASENKPV 96
          MIYDVNS+LFRSFLSQKGGS  RKM EQKPKEQRPKASENKPV
Sbjct: 1  MIYDVNSALFRSFLSQKGGSDKRKMEEQKPKEQRPKASENKPV 43

[Close]

BLAST of Carg05055 vs. ExPASy TrEMBL
Match: A0A0D9XYS7 (Uncharacterized protein OS=Leersia perrieri OX=77586 PE=4 SV=1)

HSP 1 Score: 70.9 bits (172), Expect = 5.0e-09
Identity = 40/51 (78.43%), Postives = 44/51 (86.27%), Query Frame = 0


Query: 54  MIYDVNSSLFRSFLSQKGGSSD-RKM-EQKPKEQRPKASENKPVGVKASDE 103
           MIYDVNS LFRSFLSQKGG+SD RKM EQKPKEQRPKASENKP+ +  + E
Sbjct: 1   MIYDVNSPLFRSFLSQKGGASDKRKMEEQKPKEQRPKASENKPISINPTRE 51

[Close]

BLAST of Carg05055 vs. ExPASy TrEMBL
Match: A0A2C9UV34 (Uncharacterized protein (Fragment) OS=Manihot esculenta OX=3983 GN=MANES_12G047600 PE=4 SV=1)

HSP 1 Score: 70.5 bits (171), Expect = 6.5e-09
Identity = 38/46 (82.61%), Postives = 41/46 (89.13%), Query Frame = 0


Query: 52 SIMIYDVNSSLFRSFLSQKGGSSDRKM--EQKPKEQRPKASENKPV 96
          S MIYDVNS LFRSFLSQKGGSSDR+   EQKPKEQ+PKASENKP+
Sbjct: 17 STMIYDVNSPLFRSFLSQKGGSSDRRKMEEQKPKEQKPKASENKPI 62

[Close]

BLAST of Carg05055 vs. TAIR 10
Match: AT3G07230.1 (wound-responsive protein-related )

HSP 1 Score: 67.4 bits (163), Expect = 1.1e-11
Identity = 36/43 (83.72%), Postives = 39/43 (90.70%), Query Frame = 0


Query: 54 MIYDVNSSLFRSFLSQKGGSSD-RKMEQKPKEQRPKASENKPV 96
          MIYDVNS LFRSFLSQKG SSD RKME KP+EQ+PKAS+NKPV
Sbjct: 1  MIYDVNSGLFRSFLSQKGSSSDKRKMEDKPREQKPKASDNKPV 43

The following BLAST results are available for this feature:

BLAST of Carg05055 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG7025423.1	6.1e-70	100.00	Wound-induced basic protein, partial [Cucurbita argyrosperma subsp. argyrosperma...	[more]
XP_022960021.1	1.9e-10	97.67	wound-induced basic protein-like isoform X2 [Cucurbita moschata]	[more]
KAF9688417.1	2.4e-10	68.42	hypothetical protein SADUNF_Sadunf02G0195100 [Salix dunnii]	[more]
XP_034916000.1	4.2e-10	82.14	LOW QUALITY PROTEIN: wound-induced basic protein [Populus alba]	[more]
KAG6785373.1	4.2e-10	82.14	hypothetical protein POTOM_011103 [Populus tomentosa]	[more]

BLAST of Carg05055 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q09020	1.5e-10	81.82	Wound-induced basic protein OS=Phaseolus vulgaris OX=3885 GN=PR4 PE=2 SV=1	[more]

BLAST of Carg05055 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1H6H7	9.1e-11	97.67	wound-induced basic protein-like isoform X2 OS=Cucurbita moschata OX=3662 GN=LOC...	[more]
A0A6N2LGA5	1.5e-10	72.06	Uncharacterized protein OS=Salix viminalis OX=40686 GN=SVIM_LOCUS214898 PE=4 SV=...	[more]
A0A0B0NB31	3.8e-09	90.70	Wound-induced basic OS=Gossypium arboreum OX=29729 GN=LOC108471243 PE=4 SV=1	[more]
A0A0D9XYS7	5.0e-09	78.43	Uncharacterized protein OS=Leersia perrieri OX=77586 PE=4 SV=1	[more]
A0A2C9UV34	6.5e-09	82.61	Uncharacterized protein (Fragment) OS=Manihot esculenta OX=3983 GN=MANES_12G0476...	[more]

BLAST of Carg05055 vs. TAIR 10


Match Name	E-value	Identity	Description
AT3G07230.1	1.1e-11	83.72	wound-responsive protein-related	[more]

InterPro

Analysis Name: InterPro Annotations of Silver-seed gourd (SMH-JMG-627) v2
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR012643	Wound-inducible basic	PFAM	PF08186	Wound_ind	coord: 54..95 e-value: 1.8E-16 score: 60.3
IPR012643	Wound-inducible basic	PANTHER	PTHR36752	OS12G0405700 PROTEIN	coord: 54..111
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 68..102
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 74..102

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Carg05055-RA	Carg05055-RA	mRNA