Carg05040 (gene) Silver-seed gourd (SMH-JMG-627) v2

Overview
NameCarg05040
Typegene
OrganismCucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
DescriptionUnknown protein
LocationCarg_Chr08: 1218221 .. 1220799 (+)
RNA-Seq ExpressionCarg05040
SyntenyCarg05040
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAGACCCATCCCTAGTGCAGTTCAGGCGATGTCCCTTACCCTTCCCTTCTCGTTTCCTCGAGGTAAAATTGAAGATGGGAAGGACGATATTGCTGCATTGTGATTTATGTATATTACCACTGGCCTAGTTTTGGGAAGATAGAGACAGATGTAGAGGTACGTGTACAGGGTCTTATCTTTCCTTTCTCATAATTCTCTATTTTTCCGTTGTCTTGAGGTTCTTCTTCAAGTCACCCGTCCTTTTATTAGAGGGCCTCGTTCCTTTGGAGTTGATAGATTAGTGCATGTATTGACATTAATAACCATTAAGAGGGTAGAAATCATTTCCGAGGACAAATGCCTCCTCGGAAAATTTTGTGAATATTAGGTTTCTGGCATCTGCATTATCAGTGCCTTCTAAACTAACCATCCATCAGTGCATGTGCACCTGTAGAAGTATTGTATTATGTACTTGTGTACCCAATTTTATAATGCAACAAGCTTCAGTAACTGATCCATTTCTTTTTTGCTGTTCTAGAAGAAAGAAGCCTTTTCTTTGAGTTGCGGCTGCTAGATTCTCTGACCCATAGTTTCCCTAAGATGTCATTTTCTTCTGTTGTCTTTTCTAATTCTTCATGCACCCGCACATGATTTCAATGTCAATGTTGTCTGTGGTAGTGGGCATCTTCTTTGAGATCATTTTTATAAAAACTTCCCTTTCATTCTTGATATGAGACTTCTAGGAGACAGTTGGCTCACGGTTTTAATGAGCTCAAGCATTGGAAGCTTGAATCTATATGATGTGTTCAAATTGTGCAAAGAAATGAAATCCATAGAAAATCTGGGTTTGTAAAATGACTTCTGTATGGTCCGTCTAGATTTATGATTTGTAAAAGTTTGTATGTAGTATATAGGTGAGTTTCATTAGTTAGTATTGAATCAATTCTTGTAAGTTGTGATGGACAAAATCAGGTGTCAAATAGAAACTTAGCTTCATAATCCTGAGCTTACACCAACTTTACTTGGAAGTCAAACACCCCTTAGTGATTTAGAAAACATTTGTGATGTATATTAGTAACCCGTCTCGGTACCGAAAGGGATTTGAAGCTGTGATGTGTGGGATTGCCCAGGTCTCATCCTACCCTCTAGACCAACTGCCAACAAGCTCTGGAATGTTTTTCTAAGAAACAATCACATTTCCTCTGGTGCTTTATGACATTTACCATGGTTCTTTGTAGACAGAAGGTAGGGTTTGGCATTATGATTCTTCACTAACTCGTAAAAGTGTATTAGGTTGGATTGGTTGTGCTATTGATGAGCTTGCCAATGTATGATGCTGGTGACAATGGTTTCATCTCATTATGATTGTTCAATGAATGTAATTTCTTGAAACATGGATTTCAGACAGCCAACTGTTCCATGTTTACTATTTATAGACTTCCCAGTTGATAACTGCTTAGTAAACAAAGGACTCTTGGCACTCTCCTTTTTTCTCTCTTCGATTTTTTTTTTCTGTTATAGTGTGCAGCCATCTTGTTATTCTCATCTTCGGATTCATTGATCTAAAGCTTTTGGAATGCAGCAGAATTCATGTTTCCAAGGGTCTGTTAATGGTTACCAGAAGTTAACTTTGATCTACATTCAAGTCCAATGTCTGTAATTTGTCCAAATTTTGTTAAATAGTGAAGTTTAAATCTTCAATTCTGTTCATTTCACAGCAGATGAACGTTCGAGGACAGATGAATTTGATTCTTTTAAATCAAGTGAGTCTGGTATGGCCTTAATACCTTGCCAAGTTAGACTTGTTCAAGACCGAATCTTTCTCGAAATAAAAAAGAAACGCTGAACCCAATATTAGCAAATGATTTCAAGTTATGTTGACCCATTACTAAAGATTTGATAAGCTACCATACTACGATTCTTGTCTTTTAAGAATCACTGTTCTACAATTTAGGATCTGTTGAAGTAAAGTGATTCTTGTATCTAGAGACTTTGTGGGTGTATAAAGGTATTACTAAAAGAGAGTGAAAAGAAGAAGAAGAAGAAGAAGAAAGGGTGATGCTTTGATTGAAAATACGAAATCTGTAGCAGTTGGAAGAAAATTGATCTCAAAAAAAGCAGATGGATTGGGTTTGGAATCAAAATTTGAGACAGAGAGAAGAACAGATTCATAGTAATACTGAATTAGTCTGAACAAGAACCGTTCTGAATGAAATTAGTTAAAATGTAGGAAACTAAAAAGAAATCTTTTCTTACAGAGTTAGAAGAGGATCCCCTTTTTCTGAAGAACAAGGAGCAAAAATCTTCAAGGATCATGGCCAATCTTCAGCCTCTTGGGGGGAGGAGATCCGAAAGCTTTTGCAATTGAATTCACAATCTTCTTTTCCGATTCCAAAATCATCTCAATCCGCCTGTTTTCCATCGCAATTCTGTTCATCTCCGCTTCCTTCATCATCTCCATCTTCAAACTCTCCATTCCGACCAATCTATCGGCGAATAATCGAATCTCTGCCGCTAATTTGGAGCACATCTCTTTCCCTTCCTCAGCTACCGCCGCCTCTCCTGCCAGATCCTCCTCCGGAAACCTGGAAACCCTAA

mRNA sequence

ATGAGACCCATCCCTAGTGCAGTTCAGGCGATGTCCCTTACCCTTCCCTTCTCGTTTCCTCGAGGTAAAATTGAAGATGGGAAGGACGATATTGCTGCATTTAACCCGTCTCGGTACCGAAAGGGATTTGAAGCTGTGATGTGTGGGATTGCCCAGGTCTCATCCTACCCTCTAGACCAACTGCCAACAAGCTCTGGAATCCATCTTGTTATTCTCATCTTCGGATTCATTGATCTAAAGCTTTTGGAATGCAGCAGAATTCATGTTTCCAAGGGTCTGTTAATGGTATTACTAAAAGAGAGTGAAAAGAAGAAGAAGAAGAAGAAGAAAGGAGTTAGAAGAGGATCCCCTTTTTCTGAAGAACAAGGAGCAAAAATCTTCAAGGATCATGGCCAATCTTCAGCCTCTTGGGGGGAGGAGATCCGAAAGCTTTTGCAATTGAATTCACAATCTTCTTTTCCGATTCCAAAATCATCTCAATCCGCCTGTTTTCCATCGCAATTCTGTTCATCTCCGCTTCCTTCATCATCTCCATCTTCAAACTCTCCATTCCGACCAATCTATCGGCGAATAATCGAATCTCTGCCGCTAATTTGGAGCACATCTCTTTCCCTTCCTCAGCTACCGCCGCCTCTCCTGCCAGATCCTCCTCCGGAAACCTGGAAACCCTAA

Coding sequence (CDS)

ATGAGACCCATCCCTAGTGCAGTTCAGGCGATGTCCCTTACCCTTCCCTTCTCGTTTCCTCGAGGTAAAATTGAAGATGGGAAGGACGATATTGCTGCATTTAACCCGTCTCGGTACCGAAAGGGATTTGAAGCTGTGATGTGTGGGATTGCCCAGGTCTCATCCTACCCTCTAGACCAACTGCCAACAAGCTCTGGAATCCATCTTGTTATTCTCATCTTCGGATTCATTGATCTAAAGCTTTTGGAATGCAGCAGAATTCATGTTTCCAAGGGTCTGTTAATGGTATTACTAAAAGAGAGTGAAAAGAAGAAGAAGAAGAAGAAGAAAGGAGTTAGAAGAGGATCCCCTTTTTCTGAAGAACAAGGAGCAAAAATCTTCAAGGATCATGGCCAATCTTCAGCCTCTTGGGGGGAGGAGATCCGAAAGCTTTTGCAATTGAATTCACAATCTTCTTTTCCGATTCCAAAATCATCTCAATCCGCCTGTTTTCCATCGCAATTCTGTTCATCTCCGCTTCCTTCATCATCTCCATCTTCAAACTCTCCATTCCGACCAATCTATCGGCGAATAATCGAATCTCTGCCGCTAATTTGGAGCACATCTCTTTCCCTTCCTCAGCTACCGCCGCCTCTCCTGCCAGATCCTCCTCCGGAAACCTGGAAACCCTAA

Protein sequence

MRPIPSAVQAMSLTLPFSFPRGKIEDGKDDIAAFNPSRYRKGFEAVMCGIAQVSSYPLDQLPTSSGIHLVILIFGFIDLKLLECSRIHVSKGLLMVLLKESEKKKKKKKKGVRRGSPFSEEQGAKIFKDHGQSSASWGEEIRKLLQLNSQSSFPIPKSSQSACFPSQFCSSPLPSSSPSSNSPFRPIYRRIIESLPLIWSTSLSLPQLPPPLLPDPPPETWKP
Homology
[Close]
BLAST of Carg05040 vs. NCBI nr
Match: KAG7025409.1 (hypothetical protein SDJN02_11904, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 432.2 bits (1110), Expect = 2.8e-117
Identity = 223/223 (100.00%), Postives = 223/223 (100.00%), Query Frame = 0 

Query: 1   MRPIPSAVQAMSLTLPFSFPRGKIEDGKDDIAAFNPSRYRKGFEAVMCGIAQVSSYPLDQ 60
           MRPIPSAVQAMSLTLPFSFPRGKIEDGKDDIAAFNPSRYRKGFEAVMCGIAQVSSYPLDQ
Sbjct: 1   MRPIPSAVQAMSLTLPFSFPRGKIEDGKDDIAAFNPSRYRKGFEAVMCGIAQVSSYPLDQ 60

Query: 61  LPTSSGIHLVILIFGFIDLKLLECSRIHVSKGLLMVLLKESEKKKKKKKKGVRRGSPFSE 120
           LPTSSGIHLVILIFGFIDLKLLECSRIHVSKGLLMVLLKESEKKKKKKKKGVRRGSPFSE
Sbjct: 61  LPTSSGIHLVILIFGFIDLKLLECSRIHVSKGLLMVLLKESEKKKKKKKKGVRRGSPFSE 120

Query: 121 EQGAKIFKDHGQSSASWGEEIRKLLQLNSQSSFPIPKSSQSACFPSQFCSSPLPSSSPSS 180
           EQGAKIFKDHGQSSASWGEEIRKLLQLNSQSSFPIPKSSQSACFPSQFCSSPLPSSSPSS
Sbjct: 121 EQGAKIFKDHGQSSASWGEEIRKLLQLNSQSSFPIPKSSQSACFPSQFCSSPLPSSSPSS 180

Query: 181 NSPFRPIYRRIIESLPLIWSTSLSLPQLPPPLLPDPPPETWKP 224
           NSPFRPIYRRIIESLPLIWSTSLSLPQLPPPLLPDPPPETWKP
Sbjct: 181 NSPFRPIYRRIIESLPLIWSTSLSLPQLPPPLLPDPPPETWKP 223

The following BLAST results are available for this feature:
BLAST of Carg05040 vs. NCBI nr
Match NameE-valueIdentityDescription
KAG7025409.12.8e-117100.00hypothetical protein SDJN02_11904, partial [Cucurbita argyrosperma subsp. argyro... [more]
BLAST of Carg05040 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of Carg05040 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of Carg05040 vs. NCBI nr
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Silver-seed gourd (SMH-JMG-627) v2
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 106..133
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 207..223
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 203..223

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Carg05040-RACarg05040-RAmRNA