Carg05027 (gene) Silver-seed gourd (SMH-JMG-627) v2

Overview


Name	Carg05027
Type	gene
Organism	Cucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
Description	RRM domain-containing protein
Location	Carg_Chr08: 1124896 .. 1127838 (+)
RNA-Seq Expression	Carg05027
Synteny	Carg05027

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

CTGACAGCCATTGGAGGAGACCCCACCACCTCCACCTTTTTTCATCAAATTCATCTCCATTTCTCCACGCTCCGCTCCTCCGTTGTTTGTTCTACTGCTACAGGCTCATGCCCCGCGCTCACCGTTGCTCATTTCGTTTCTCCGCTTCGGACTAGTAAGATTCACGCTTTAATCTTTGATTTCCTGCTTTACTTTACCGGCTTCTTTGATTTATTCTCCATTGAGAGTCTCTCTCCTTGTGATTTGTCAATTCAGTCGCCGCCATCTCGTTATATTGGGTTTATTATTCTTTTTCCCATGATTTTATGGGCTTTAAGCACAACAATGAACAGGGTCGAAATGTTCTCTATGAGATGGGTTTTGATTTAGATAGGTGACTTGATTGCACTCTATATGGGCCTCATATTGCTTGCAATTGTGAGAAAAAAACAATGGAGATGGAAAGAAATGATTGATGGGTTGTGATTTGTTCTGGAAATAACAGTAGTATCGGTTTAGAGAAGCGCACTTATGTAGAATATGTTGATGTCATTTAGATGCAGTTCACTCACAAGCTTGAGATTATCAGTGTGTGTATGTGTGTGTGGCCTTAGTCTGGGCCTAATCCTGGGTGCATATCTTAATTGGGTTGCAGCCAACTTCAAAACTCCAAAATCTTGATCTTGTGAGATGAAATTAGGGACAAAGAAGGATTTGTTTTGCTTTTCTTTCTGTAAAAGATTATACAACCTCTTAGGAGTGTTTGGTTAATCCAGAAAATGGTTGTAACCTTGGAGCATGGGGCCATTTCTTCATGCCAAAAGTTTGCTTCTGATGAAGTTTCTCCAACTATTAAATGTAGGTCCGGTAGGTTTGTTGCCGCCTTGGGATTGATCAGTATCTAGCGTAGAGTTTACGGACATAAATTGCTAAGTTACAAATAGTTAACCTATTCACATAAGACATGATTTCAACCTAAAATGTAACAGCCCAAGTCCACCGCTAGCAAATATTGTCCTCTTTGAGATTTCCTTCTTGGACTCCCCTCAAGGTTTTAAAATGTGTCCTTGTGTTCATTGCTTGGGTTTTAAAAACCTTGAGGAGAAGTCAGCTTGGGCTATTACAAATGGTATCAAAGCTAGACACCGAGTTGTGTGCCAGCAAGAACGTTGGACCCCGAATAGGGTGGATTGTGAGATCCCACATCGATTAGAGAGAGGAACGAGTGCCAGCAAGGACTCTAAGCCCGAAGGGGGTGGATTGTGAGATCCCAAATCAGTTGGAGAGGGGAACAAAGCATTCTTTACAAGGGTGTGGAAATTTCTCCCTAGTAGACGTGTTTTAAAACTGTGAGGCTGATGGCAATACGTAACGGGCTAAAGCGGACAATATCTGTTAGCAGTGGGCTTGGACTGTTATATAAAAGTTGTTGTATCAGTAACCTAAGCACATCTAATTGGTTAAAAGATCTATTAATTTCCTTGAGGTGAATCAAATTCCAATCATACAGTGTGTACTCTTTCGTGTTGTTTTTTTGATACTGTAATTATCTTAGTTTACATTAAACAATTGTGCTAACTCCTTTAATGGGTATATTAGGTTCTTTATCATCCCACATGGGATCAGCTACGGATGAACAATATGCCAAGTTTGAGGAAAAGGTAAAACGGACTGTCTATGTTGATAATCTCTCCCCCCAAGTGACTGAGCCTGTCTTGAGAACCGCTTTAGATCAGTTTGGGACTGTTGTCAGTGTCCATTTTATTCCAAATTTCACGGAGCCAATTAATAGCTCTCAATGTGCTTTAGTCGAGATGAAGGACTCGAAGGAGGCAAATTCTGTCATCTCTGTGATAGCTCAGTTCCCTTTCATGATGTCTGGAATGCCGAGACCGGTGAGGGCGTACCCTGCCGAAGTGGAAATGTTCGATGATCGCCCTATAAAGCCCGGTAGGAAGATTAGCTTTGTCTGGTTGGGAAAGGATGATCCTGACTTTGAAGTGGCAAAGAAAATGAAGTGTCTTACTCAGAGGCATGTCGCTGAAGCTGCATTCTTGCTGAAGGTATGCCACATTTAGTCTGTATTTTGTAGGTCTCTAATATTGTTCCCATCAGTTTAACGTTTATACCATGAAAAACGAGAAATACGAGACATCTAAGTCATACAAGTAAAGAGATATATTCATCCTTCGGTGTGCCGCTCAGGTGTTAAACTGGTGGAGTCAACGAGACATATAAGACACCAAACTAAAAATTTAGAGGCAACTTTTAAATTATAAAGATGAAACATACTCGATGTTGAAAGTTTAAGGATCTATTAGAAAACTTTTAAAAGTAAGACTAAAAGTCGAGGGATCGAACTTGAAATTTAGCCTTGTTAAATAGTTCTTAACAAAGGTTCCTCCCATTCTCTTGCAGCAACAGTTGGTGGAAGAGGAGAAGCTTGCAAAGCAGCAGCAAGATGCACTGAAAGCAAACTACAAGAAATATGAGATCGTTGAAGGTGTAATGACTGATGGAACTGCCCGCAGGTTAGCAAGGCGTTATAATATGCGAGTTGCAGATGATTAATTGCATGCTTTGAAGCTTTTTTTGCACTCCTAATTGCCTGATCACGTAAATTTTGTACAAATTATCACTTAGATGGCCTTATAGAGATTAATTAGAGAATTCTGTTGTGATTTAGAGGGAGAAGGATAGTTAATTAGTGTAATACTCCTATTATTACTCTTTTGGATTGGTCTCTTGTTTGGGAAATGACTTCGGTTTAAAATCATCTAAAGACATTCGTTCCTATAAGAGCTTGAGAACGGACAAAGGCATAGGTCGAACACCTCAAAGAAACAACTCTAAACTTTTAAGGACCCTATCCCATCGAAAACAGATATTGTCTTCTTTAGGCTTTCCTTTCTGGGTTTCCCCTTAAGATTTTTACACTATCCTTCCAACCATTGTGTGATCTCA

mRNA sequence

CTGACAGCCATTGGAGGAGACCCCACCACCTCCACCTTTTTTCATCAAATTCATCTCCATTTCTCCACGCTCCGCTCCTCCGTTGTTTGTTCTACTGCTACAGGCTCATGCCCCGCGCTCACCGTTGCTCATTTCGTTTCTCCGCTTCGGACTAGTTCTTTATCATCCCACATGGGATCAGCTACGGATGAACAATATGCCAAGTTTGAGGAAAAGGTAAAACGGACTGTCTATGTTGATAATCTCTCCCCCCAAGTGACTGAGCCTGTCTTGAGAACCGCTTTAGATCAGTTTGGGACTGTTGTCAGTGTCCATTTTATTCCAAATTTCACGGAGCCAATTAATAGCTCTCAATGTGCTTTAGTCGAGATGAAGGACTCGAAGGAGGCAAATTCTGTCATCTCTGTGATAGCTCAGTTCCCTTTCATGATGTCTGGAATGCCGAGACCGGTGAGGGCGTACCCTGCCGAAGTGGAAATGTTCGATGATCGCCCTATAAAGCCCGGTAGGAAGATTAGCTTTGTCTGGTTGGGAAAGGATGATCCTGACTTTGAAGTGGCAAAGAAAATGAAGTGTCTTACTCAGAGGCATGTCGCTGAAGCTGCATTCTTGCTGAAGCAACAGTTGGTGGAAGAGGAGAAGCTTGCAAAGCAGCAGCAAGATGCACTGAAAGCAAACTACAAGAAATATGAGATCGTTGAAGGTGTAATGACTGATGGAACTGCCCGCAGGTTAGCAAGGCGTTATAATATGCGAGTTGCAGATGATTAATTGCATGCTTTGAAGCTTTTTTTGCACTCCTAATTGCCTGATCACGTAAATTTTGTACAAATTATCACTTAGATGGCCTTATAGAGATTAATTAGAGAATTCTGTTGTGATTTAGAGGGAGAAGGATAGTTAATTAGTGTAATACTCCTATTATTACTCTTTTGGATTGGTCTCTTGTTTGGGAAATGACTTCGGTTTAAAATCATCTAAAGACATTCGTTCCTATAAGAGCTTGAGAACGGACAAAGGCATAGGTCGAACACCTCAAAGAAACAACTCTAAACTTTTAAGGACCCTATCCCATCGAAAACAGATATTGTCTTCTTTAGGCTTTCCTTTCTGGGTTTCCCCTTAAGATTTTTACACTATCCTTCCAACCATTGTGTGATCTCA

Coding sequence (CDS)

CTGACAGCCATTGGAGGAGACCCCACCACCTCCACCTTTTTTCATCAAATTCATCTCCATTTCTCCACGCTCCGCTCCTCCGTTGTTTGTTCTACTGCTACAGGCTCATGCCCCGCGCTCACCGTTGCTCATTTCGTTTCTCCGCTTCGGACTAGTTCTTTATCATCCCACATGGGATCAGCTACGGATGAACAATATGCCAAGTTTGAGGAAAAGGTAAAACGGACTGTCTATGTTGATAATCTCTCCCCCCAAGTGACTGAGCCTGTCTTGAGAACCGCTTTAGATCAGTTTGGGACTGTTGTCAGTGTCCATTTTATTCCAAATTTCACGGAGCCAATTAATAGCTCTCAATGTGCTTTAGTCGAGATGAAGGACTCGAAGGAGGCAAATTCTGTCATCTCTGTGATAGCTCAGTTCCCTTTCATGATGTCTGGAATGCCGAGACCGGTGAGGGCGTACCCTGCCGAAGTGGAAATGTTCGATGATCGCCCTATAAAGCCCGGTAGGAAGATTAGCTTTGTCTGGTTGGGAAAGGATGATCCTGACTTTGAAGTGGCAAAGAAAATGAAGTGTCTTACTCAGAGGCATGTCGCTGAAGCTGCATTCTTGCTGAAGCAACAGTTGGTGGAAGAGGAGAAGCTTGCAAAGCAGCAGCAAGATGCACTGAAAGCAAACTACAAGAAATATGAGATCGTTGAAGGTGTAATGACTGATGGAACTGCCCGCAGGTTAGCAAGGCGTTATAATATGCGAGTTGCAGATGATTAA

Protein sequence

LTAIGGDPTTSTFFHQIHLHFSTLRSSVVCSTATGSCPALTVAHFVSPLRTSSLSSHMGSATDEQYAKFEEKVKRTVYVDNLSPQVTEPVLRTALDQFGTVVSVHFIPNFTEPINSSQCALVEMKDSKEANSVISVIAQFPFMMSGMPRPVRAYPAEVEMFDDRPIKPGRKISFVWLGKDDPDFEVAKKMKCLTQRHVAEAAFLLKQQLVEEEKLAKQQQDALKANYKKYEIVEGVMTDGTARRLARRYNMRVADD

Homology

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BLAST of Carg05027 vs. NCBI nr
Match: KAG7025396.1 (hypothetical protein SDJN02_11891, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 503.8 bits (1296), Expect = 8.6e-139
Identity = 256/256 (100.00%), Postives = 256/256 (100.00%), Query Frame = 0


Query: 1   LTAIGGDPTTSTFFHQIHLHFSTLRSSVVCSTATGSCPALTVAHFVSPLRTSSLSSHMGS 60
           LTAIGGDPTTSTFFHQIHLHFSTLRSSVVCSTATGSCPALTVAHFVSPLRTSSLSSHMGS
Sbjct: 1   LTAIGGDPTTSTFFHQIHLHFSTLRSSVVCSTATGSCPALTVAHFVSPLRTSSLSSHMGS 60

Query: 61  ATDEQYAKFEEKVKRTVYVDNLSPQVTEPVLRTALDQFGTVVSVHFIPNFTEPINSSQCA 120
           ATDEQYAKFEEKVKRTVYVDNLSPQVTEPVLRTALDQFGTVVSVHFIPNFTEPINSSQCA
Sbjct: 61  ATDEQYAKFEEKVKRTVYVDNLSPQVTEPVLRTALDQFGTVVSVHFIPNFTEPINSSQCA 120

Query: 121 LVEMKDSKEANSVISVIAQFPFMMSGMPRPVRAYPAEVEMFDDRPIKPGRKISFVWLGKD 180
           LVEMKDSKEANSVISVIAQFPFMMSGMPRPVRAYPAEVEMFDDRPIKPGRKISFVWLGKD
Sbjct: 121 LVEMKDSKEANSVISVIAQFPFMMSGMPRPVRAYPAEVEMFDDRPIKPGRKISFVWLGKD 180

Query: 181 DPDFEVAKKMKCLTQRHVAEAAFLLKQQLVEEEKLAKQQQDALKANYKKYEIVEGVMTDG 240
           DPDFEVAKKMKCLTQRHVAEAAFLLKQQLVEEEKLAKQQQDALKANYKKYEIVEGVMTDG
Sbjct: 181 DPDFEVAKKMKCLTQRHVAEAAFLLKQQLVEEEKLAKQQQDALKANYKKYEIVEGVMTDG 240

Query: 241 TARRLARRYNMRVADD 257
           TARRLARRYNMRVADD
Sbjct: 241 TARRLARRYNMRVADD 256

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BLAST of Carg05027 vs. NCBI nr
Match: KAG6592987.1 (hypothetical protein SDJN03_12463, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 498.8 bits (1283), Expect = 2.8e-137
Identity = 253/256 (98.83%), Postives = 254/256 (99.22%), Query Frame = 0


Query: 1   LTAIGGDPTTSTFFHQIHLHFSTLRSSVVCSTATGSCPALTVAHFVSPLRTSSLSSHMGS 60
           L +IGGDPTTSTFFHQIHLHFSTLRSSVVCSTATGSCPALTVAHFV PLRTSSLSSHMGS
Sbjct: 2   LNSIGGDPTTSTFFHQIHLHFSTLRSSVVCSTATGSCPALTVAHFVPPLRTSSLSSHMGS 61

Query: 61  ATDEQYAKFEEKVKRTVYVDNLSPQVTEPVLRTALDQFGTVVSVHFIPNFTEPINSSQCA 120
           ATDEQYAKFEEKVKRTVYVDNLSPQVTEPVLRTALDQFGTVVSVHFIPNFTEPINSSQCA
Sbjct: 62  ATDEQYAKFEEKVKRTVYVDNLSPQVTEPVLRTALDQFGTVVSVHFIPNFTEPINSSQCA 121

Query: 121 LVEMKDSKEANSVISVIAQFPFMMSGMPRPVRAYPAEVEMFDDRPIKPGRKISFVWLGKD 180
           LVEMKDSKEANSVISVIAQFPFMMSGMPRPVRAYPAEVEMFDDRPIKPGRKISFVWLGKD
Sbjct: 122 LVEMKDSKEANSVISVIAQFPFMMSGMPRPVRAYPAEVEMFDDRPIKPGRKISFVWLGKD 181

Query: 181 DPDFEVAKKMKCLTQRHVAEAAFLLKQQLVEEEKLAKQQQDALKANYKKYEIVEGVMTDG 240
           DPDFEVAKKMKCLTQRHVAEAAFLLKQQLVEEEKLAKQQQDALKANYKKYEIVEGVMTDG
Sbjct: 182 DPDFEVAKKMKCLTQRHVAEAAFLLKQQLVEEEKLAKQQQDALKANYKKYEIVEGVMTDG 241

Query: 241 TARRLARRYNMRVADD 257
           TARRLARRYNMRVADD
Sbjct: 242 TARRLARRYNMRVADD 257

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BLAST of Carg05027 vs. NCBI nr
Match: XP_023514768.1 (uncharacterized protein LOC111778981 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 392.5 bits (1007), Expect = 2.8e-105
Identity = 199/199 (100.00%), Postives = 199/199 (100.00%), Query Frame = 0


Query: 58  MGSATDEQYAKFEEKVKRTVYVDNLSPQVTEPVLRTALDQFGTVVSVHFIPNFTEPINSS 117
           MGSATDEQYAKFEEKVKRTVYVDNLSPQVTEPVLRTALDQFGTVVSVHFIPNFTEPINSS
Sbjct: 1   MGSATDEQYAKFEEKVKRTVYVDNLSPQVTEPVLRTALDQFGTVVSVHFIPNFTEPINSS 60

Query: 118 QCALVEMKDSKEANSVISVIAQFPFMMSGMPRPVRAYPAEVEMFDDRPIKPGRKISFVWL 177
           QCALVEMKDSKEANSVISVIAQFPFMMSGMPRPVRAYPAEVEMFDDRPIKPGRKISFVWL
Sbjct: 61  QCALVEMKDSKEANSVISVIAQFPFMMSGMPRPVRAYPAEVEMFDDRPIKPGRKISFVWL 120

Query: 178 GKDDPDFEVAKKMKCLTQRHVAEAAFLLKQQLVEEEKLAKQQQDALKANYKKYEIVEGVM 237
           GKDDPDFEVAKKMKCLTQRHVAEAAFLLKQQLVEEEKLAKQQQDALKANYKKYEIVEGVM
Sbjct: 121 GKDDPDFEVAKKMKCLTQRHVAEAAFLLKQQLVEEEKLAKQQQDALKANYKKYEIVEGVM 180

Query: 238 TDGTARRLARRYNMRVADD 257
           TDGTARRLARRYNMRVADD
Sbjct: 181 TDGTARRLARRYNMRVADD 199

[Close]

BLAST of Carg05027 vs. NCBI nr
Match: XP_022959585.1 (uncharacterized protein LOC111460615 [Cucurbita moschata])

HSP 1 Score: 389.8 bits (1000), Expect = 1.8e-104
Identity = 197/199 (98.99%), Postives = 198/199 (99.50%), Query Frame = 0


Query: 58  MGSATDEQYAKFEEKVKRTVYVDNLSPQVTEPVLRTALDQFGTVVSVHFIPNFTEPINSS 117
           MGSATDEQY KFEEKVKRTVYVDNLSPQVTEPVLRTALDQFGTVVSVHFIPNFTEPINSS
Sbjct: 1   MGSATDEQYVKFEEKVKRTVYVDNLSPQVTEPVLRTALDQFGTVVSVHFIPNFTEPINSS 60

Query: 118 QCALVEMKDSKEANSVISVIAQFPFMMSGMPRPVRAYPAEVEMFDDRPIKPGRKISFVWL 177
           QCALVEMKDSKEANSVIS+IAQFPFMMSGMPRPVRAYPAEVEMFDDRPIKPGRKISFVWL
Sbjct: 61  QCALVEMKDSKEANSVISLIAQFPFMMSGMPRPVRAYPAEVEMFDDRPIKPGRKISFVWL 120

Query: 178 GKDDPDFEVAKKMKCLTQRHVAEAAFLLKQQLVEEEKLAKQQQDALKANYKKYEIVEGVM 237
           GKDDPDFEVAKKMKCLTQRHVAEAAFLLKQQLVEEEKLAKQQQDALKANYKKYEIVEGVM
Sbjct: 121 GKDDPDFEVAKKMKCLTQRHVAEAAFLLKQQLVEEEKLAKQQQDALKANYKKYEIVEGVM 180

Query: 238 TDGTARRLARRYNMRVADD 257
           TDGTARRLARRYNMRVADD
Sbjct: 181 TDGTARRLARRYNMRVADD 199

[Close]

BLAST of Carg05027 vs. NCBI nr
Match: XP_023004840.1 (uncharacterized protein LOC111498019 [Cucurbita maxima])

HSP 1 Score: 387.1 bits (993), Expect = 1.2e-103
Identity = 195/199 (97.99%), Postives = 198/199 (99.50%), Query Frame = 0


Query: 58  MGSATDEQYAKFEEKVKRTVYVDNLSPQVTEPVLRTALDQFGTVVSVHFIPNFTEPINSS 117
           MGSATDEQYAKFEEKVKRTVYVDNLSPQVTEPVLRTALDQFGTVVSVHFIPNFTEPINSS
Sbjct: 1   MGSATDEQYAKFEEKVKRTVYVDNLSPQVTEPVLRTALDQFGTVVSVHFIPNFTEPINSS 60

Query: 118 QCALVEMKDSKEANSVISVIAQFPFMMSGMPRPVRAYPAEVEMFDDRPIKPGRKISFVWL 177
           QCALVEMKDSKEANSVISVI+QFPFMMSGMPRPVRAYPAEVEMFDDRPIKPGRKISFVWL
Sbjct: 61  QCALVEMKDSKEANSVISVISQFPFMMSGMPRPVRAYPAEVEMFDDRPIKPGRKISFVWL 120

Query: 178 GKDDPDFEVAKKMKCLTQRHVAEAAFLLKQQLVEEEKLAKQQQDALKANYKKYEIVEGVM 237
           GK+DPDFEVAKKMKCLTQRHVAEAAFLLKQQLVEEEKLAKQQQDALK NYKKYEI+EGVM
Sbjct: 121 GKEDPDFEVAKKMKCLTQRHVAEAAFLLKQQLVEEEKLAKQQQDALKGNYKKYEILEGVM 180

Query: 238 TDGTARRLARRYNMRVADD 257
           TDGTARRLARRYNMRVADD
Sbjct: 181 TDGTARRLARRYNMRVADD 199

[Close]

BLAST of Carg05027 vs. ExPASy TrEMBL
Match: A0A6J1H6P8 (uncharacterized protein LOC111460615 OS=Cucurbita moschata OX=3662 GN=LOC111460615 PE=4 SV=1)

HSP 1 Score: 389.8 bits (1000), Expect = 8.7e-105
Identity = 197/199 (98.99%), Postives = 198/199 (99.50%), Query Frame = 0


Query: 58  MGSATDEQYAKFEEKVKRTVYVDNLSPQVTEPVLRTALDQFGTVVSVHFIPNFTEPINSS 117
           MGSATDEQY KFEEKVKRTVYVDNLSPQVTEPVLRTALDQFGTVVSVHFIPNFTEPINSS
Sbjct: 1   MGSATDEQYVKFEEKVKRTVYVDNLSPQVTEPVLRTALDQFGTVVSVHFIPNFTEPINSS 60

Query: 118 QCALVEMKDSKEANSVISVIAQFPFMMSGMPRPVRAYPAEVEMFDDRPIKPGRKISFVWL 177
           QCALVEMKDSKEANSVIS+IAQFPFMMSGMPRPVRAYPAEVEMFDDRPIKPGRKISFVWL
Sbjct: 61  QCALVEMKDSKEANSVISLIAQFPFMMSGMPRPVRAYPAEVEMFDDRPIKPGRKISFVWL 120

Query: 178 GKDDPDFEVAKKMKCLTQRHVAEAAFLLKQQLVEEEKLAKQQQDALKANYKKYEIVEGVM 237
           GKDDPDFEVAKKMKCLTQRHVAEAAFLLKQQLVEEEKLAKQQQDALKANYKKYEIVEGVM
Sbjct: 121 GKDDPDFEVAKKMKCLTQRHVAEAAFLLKQQLVEEEKLAKQQQDALKANYKKYEIVEGVM 180

Query: 238 TDGTARRLARRYNMRVADD 257
           TDGTARRLARRYNMRVADD
Sbjct: 181 TDGTARRLARRYNMRVADD 199

[Close]

BLAST of Carg05027 vs. ExPASy TrEMBL
Match: A0A6J1KVQ1 (uncharacterized protein LOC111498019 OS=Cucurbita maxima OX=3661 GN=LOC111498019 PE=4 SV=1)

HSP 1 Score: 387.1 bits (993), Expect = 5.7e-104
Identity = 195/199 (97.99%), Postives = 198/199 (99.50%), Query Frame = 0


Query: 58  MGSATDEQYAKFEEKVKRTVYVDNLSPQVTEPVLRTALDQFGTVVSVHFIPNFTEPINSS 117
           MGSATDEQYAKFEEKVKRTVYVDNLSPQVTEPVLRTALDQFGTVVSVHFIPNFTEPINSS
Sbjct: 1   MGSATDEQYAKFEEKVKRTVYVDNLSPQVTEPVLRTALDQFGTVVSVHFIPNFTEPINSS 60

Query: 118 QCALVEMKDSKEANSVISVIAQFPFMMSGMPRPVRAYPAEVEMFDDRPIKPGRKISFVWL 177
           QCALVEMKDSKEANSVISVI+QFPFMMSGMPRPVRAYPAEVEMFDDRPIKPGRKISFVWL
Sbjct: 61  QCALVEMKDSKEANSVISVISQFPFMMSGMPRPVRAYPAEVEMFDDRPIKPGRKISFVWL 120

Query: 178 GKDDPDFEVAKKMKCLTQRHVAEAAFLLKQQLVEEEKLAKQQQDALKANYKKYEIVEGVM 237
           GK+DPDFEVAKKMKCLTQRHVAEAAFLLKQQLVEEEKLAKQQQDALK NYKKYEI+EGVM
Sbjct: 121 GKEDPDFEVAKKMKCLTQRHVAEAAFLLKQQLVEEEKLAKQQQDALKGNYKKYEILEGVM 180

Query: 238 TDGTARRLARRYNMRVADD 257
           TDGTARRLARRYNMRVADD
Sbjct: 181 TDGTARRLARRYNMRVADD 199

[Close]

BLAST of Carg05027 vs. ExPASy TrEMBL
Match: A0A1S3B3J3 (uncharacterized protein LOC103485592 OS=Cucumis melo OX=3656 GN=LOC103485592 PE=4 SV=1)

HSP 1 Score: 335.9 bits (860), Expect = 1.5e-88
Identity = 167/199 (83.92%), Postives = 183/199 (91.96%), Query Frame = 0


Query: 58  MGSATDEQYAKFEEKVKRTVYVDNLSPQVTEPVLRTALDQFGTVVSVHFIPNFTEPINSS 117
           MGSA DEQ++ FEEKVKRTVYVDNLSPQVTEPVLRTALDQFGTVV+VHFIPN+TEPINSS
Sbjct: 1   MGSAKDEQFSMFEEKVKRTVYVDNLSPQVTEPVLRTALDQFGTVVNVHFIPNYTEPINSS 60

Query: 118 QCALVEMKDSKEANSVISVIAQFPFMMSGMPRPVRAYPAEVEMFDDRPIKPGRKISFVWL 177
           QCALVEMKDSKEA SVI+VIAQFPFMMSGMPRPVRA PAE EMFDDRP+KPGRKISF WL
Sbjct: 61  QCALVEMKDSKEAKSVIAVIAQFPFMMSGMPRPVRARPAEAEMFDDRPVKPGRKISFRWL 120

Query: 178 GKDDPDFEVAKKMKCLTQRHVAEAAFLLKQQLVEEEKLAKQQQDALKANYKKYEIVEGVM 237
             DDPDFEVA+++K LT++HVAEAAFLLKQ L EEEKLAKQQQ+ L+ NYKKYEIV+ VM
Sbjct: 121 ESDDPDFEVARQIKRLTKKHVAEAAFLLKQHLAEEEKLAKQQQETLRGNYKKYEIVDSVM 180

Query: 238 TDGTARRLARRYNMRVADD 257
            DGTARRLA+ YNMRV+DD
Sbjct: 181 ADGTARRLAKNYNMRVSDD 199

[Close]

BLAST of Carg05027 vs. ExPASy TrEMBL
Match: A0A0A0KAE7 (RRM domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_6G013320 PE=4 SV=1)

HSP 1 Score: 331.3 bits (848), Expect = 3.7e-87
Identity = 165/199 (82.91%), Postives = 182/199 (91.46%), Query Frame = 0


Query: 58  MGSATDEQYAKFEEKVKRTVYVDNLSPQVTEPVLRTALDQFGTVVSVHFIPNFTEPINSS 117
           MGS  DEQ+A FEEKVKRTVYVDNLS QVTEPVLRTALDQFGTVVSVHFIPN+TEPINSS
Sbjct: 1   MGSEKDEQFAMFEEKVKRTVYVDNLSLQVTEPVLRTALDQFGTVVSVHFIPNYTEPINSS 60

Query: 118 QCALVEMKDSKEANSVISVIAQFPFMMSGMPRPVRAYPAEVEMFDDRPIKPGRKISFVWL 177
           QCALVEMKDSKEA SVI+VIAQFPFMMSGMPRPVRA PAEVEMFDDRP+KPGRKISF WL
Sbjct: 61  QCALVEMKDSKEAKSVITVIAQFPFMMSGMPRPVRARPAEVEMFDDRPVKPGRKISFRWL 120

Query: 178 GKDDPDFEVAKKMKCLTQRHVAEAAFLLKQQLVEEEKLAKQQQDALKANYKKYEIVEGVM 237
             DDPDFEVA+++K L+++HVAEAAFL+KQ + EEEKLAKQQQ+ LK NYKKYEIV+ VM
Sbjct: 121 ESDDPDFEVARQIKRLSKKHVAEAAFLVKQHMAEEEKLAKQQQETLKGNYKKYEIVDSVM 180

Query: 238 TDGTARRLARRYNMRVADD 257
            DGTARRLA+ YNMR++DD
Sbjct: 181 ADGTARRLAKHYNMRISDD 199

[Close]

BLAST of Carg05027 vs. ExPASy TrEMBL
Match: A0A6J1DB90 (uncharacterized protein LOC111018537 OS=Momordica charantia OX=3673 GN=LOC111018537 PE=4 SV=1)

HSP 1 Score: 324.7 bits (831), Expect = 3.4e-85
Identity = 163/199 (81.91%), Postives = 180/199 (90.45%), Query Frame = 0


Query: 58  MGSATDEQYAKFEEKVKRTVYVDNLSPQVTEPVLRTALDQFGTVVSVHFIPNFTEPINSS 117
           MGSAT+EQ+A FEEKVKRTVYVDNLSPQVTEPV+RTALDQFGTVV V FIPN+ EP+NSS
Sbjct: 1   MGSATEEQFAAFEEKVKRTVYVDNLSPQVTEPVMRTALDQFGTVVRVQFIPNYMEPLNSS 60

Query: 118 QCALVEMKDSKEANSVISVIAQFPFMMSGMPRPVRAYPAEVEMFDDRPIKPGRKISFVWL 177
           QCALVEMKD KEA SVISVIA+FPFM+SGMPRPVRA PAEVEMFDDRPIKPG KISF WL
Sbjct: 61  QCALVEMKDLKEAKSVISVIAEFPFMISGMPRPVRARPAEVEMFDDRPIKPGSKISFSWL 120

Query: 178 GKDDPDFEVAKKMKCLTQRHVAEAAFLLKQQLVEEEKLAKQQQDALKANYKKYEIVEGVM 237
            ++DPDF+VAKKMK  T++H AE AFLLKQQL+EEEKLAKQQQ+ LK NYKK+EIVE VM
Sbjct: 121 DQNDPDFQVAKKMKLFTRKHAAETAFLLKQQLLEEEKLAKQQQEVLKGNYKKHEIVESVM 180

Query: 238 TDGTARRLARRYNMRVADD 257
           TDGTARRLA+ Y+MRV DD
Sbjct: 181 TDGTARRLAKCYDMRVFDD 199

[Close]

BLAST of Carg05027 vs. TAIR 10
Match: AT1G05970.2 (RNA-binding (RRM/RBD/RNP motifs) family protein )

HSP 1 Score: 188.0 bits (476), Expect = 9.7e-48
Identity = 92/195 (47.18%), Postives = 137/195 (70.26%), Query Frame = 0


Query: 58  MGSATDEQYAKFEEKVKRTVYVDNLSPQVTEPVLRTALDQFGTVVSVHFIPNFTEPINSS 117
           M +  +  Y KF E+V+RTVYVD L+P  T PV+ +A +QFGTV  V FIPN+  P    
Sbjct: 1   MATPEEVAYEKFLERVRRTVYVDELTPLATAPVISSAFNQFGTVKKVSFIPNYLGPKELP 60

Query: 118 QCALVEMKDSKEANSVISVIAQFPFMMSGMPRPVRAYPAEVEMFDDRPIKPGRKISFVWL 177
              LVEM++ +   +VIS ++Q PFM++GMPRPVRA  AE  MF D+P KPGR + F W+
Sbjct: 61  MGVLVEMENEEMTQAVISTVSQLPFMVAGMPRPVRACAAEPNMFVDKPKKPGRTVRFRWI 120

Query: 178 GKDDPDFEVAKKMKCLTQRHVAEAAFLLKQQLVEEEKLAKQQQDALKANYKKYEIVEGVM 237
             +DPDF+ A+++K L ++H AE +F+LK+QL E EKL+KQQ +    ++KK+E+++ ++
Sbjct: 121 KPNDPDFDKARRVKRLARKHSAENSFMLKKQLEEAEKLSKQQAETAVTHHKKFEMMDKLL 180

Query: 238 TDGTARRLARRYNMR 253
            DG A++LA RY+++
Sbjct: 181 YDGVAQKLAGRYDLK 195

[Close]

BLAST of Carg05027 vs. TAIR 10
Match: AT1G05970.1 (RNA-binding (RRM/RBD/RNP motifs) family protein )

HSP 1 Score: 181.0 bits (458), Expect = 1.2e-45
Identity = 91/195 (46.67%), Postives = 135/195 (69.23%), Query Frame = 0


Query: 58  MGSATDEQYAKFEEKVKRTVYVDNLSPQVTEPVLRTALDQFGTVVSVHFIPNFTEPINSS 117
           M +  +  Y KF E+V+RTVYVD L+P  T PV+ +A +QFGTV  V FIPN+  P    
Sbjct: 1   MATPEEVAYEKFLERVRRTVYVDELTPLATAPVISSAFNQFGTVKKVSFIPNYLGPKELP 60

Query: 118 QCALVEMKDSKEANSVISVIAQFPFMMSGMPRPVRAYPAEVEMFDDRPIKPGRKISFVWL 177
              LVEM++ +   +VIS ++Q PFM++GMPRPVRA  AE  MF D+P KPGR + F W+
Sbjct: 61  MGVLVEMENEEMTQAVISTVSQLPFMVAGMPRPVRACAAEPNMFVDKPKKPGRTVRFRWI 120

Query: 178 GKDDPDFEVAKKMKCLTQRHVAEAAFLLKQQLVEEEKLAKQQQDALKANYKKYEIVEGVM 237
             +DPDF+ A+++K L ++H AE +F+LK  L E EKL+KQQ +    ++KK+E+++ ++
Sbjct: 121 KPNDPDFDKARRVKRLARKHSAENSFMLK--LEEAEKLSKQQAETAVTHHKKFEMMDKLL 180

Query: 238 TDGTARRLARRYNMR 253
            DG A++LA RY+++
Sbjct: 181 YDGVAQKLAGRYDLK 193

The following BLAST results are available for this feature:

BLAST of Carg05027 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG7025396.1	8.6e-139	100.00	hypothetical protein SDJN02_11891, partial [Cucurbita argyrosperma subsp. argyro...	[more]
KAG6592987.1	2.8e-137	98.83	hypothetical protein SDJN03_12463, partial [Cucurbita argyrosperma subsp. sorori...	[more]
XP_023514768.1	2.8e-105	100.00	uncharacterized protein LOC111778981 [Cucurbita pepo subsp. pepo]	[more]
XP_022959585.1	1.8e-104	98.99	uncharacterized protein LOC111460615 [Cucurbita moschata]	[more]
XP_023004840.1	1.2e-103	97.99	uncharacterized protein LOC111498019 [Cucurbita maxima]	[more]

BLAST of Carg05027 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of Carg05027 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1H6P8	8.7e-105	98.99	uncharacterized protein LOC111460615 OS=Cucurbita moschata OX=3662 GN=LOC1114606...	[more]
A0A6J1KVQ1	5.7e-104	97.99	uncharacterized protein LOC111498019 OS=Cucurbita maxima OX=3661 GN=LOC111498019...	[more]
A0A1S3B3J3	1.5e-88	83.92	uncharacterized protein LOC103485592 OS=Cucumis melo OX=3656 GN=LOC103485592 PE=...	[more]
A0A0A0KAE7	3.7e-87	82.91	RRM domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_6G013320 PE=4 SV...	[more]
A0A6J1DB90	3.4e-85	81.91	uncharacterized protein LOC111018537 OS=Momordica charantia OX=3673 GN=LOC111018...	[more]

BLAST of Carg05027 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G05970.2	9.7e-48	47.18	RNA-binding (RRM/RBD/RNP motifs) family protein	[more]
AT1G05970.1	1.2e-45	46.67	RNA-binding (RRM/RBD/RNP motifs) family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Silver-seed gourd (SMH-JMG-627) v2
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 206..226
None	No IPR available	PANTHER	PTHR36309	RNA-BINDING (RRM/RBD/RNP MOTIFS) FAMILY PROTEIN	coord: 62..255
None	No IPR available	CDD	cd00590	RRM_SF	coord: 77..135 e-value: 5.93918E-9 score: 49.6109
IPR000504	RNA recognition motif domain	SMART	SM00360	rrm1_1	coord: 76..154 e-value: 4.7E-4 score: 29.5
IPR000504	RNA recognition motif domain	PFAM	PF00076	RRM_1	coord: 77..135 e-value: 1.8E-7 score: 30.9
IPR000504	RNA recognition motif domain	PROSITE	PS50102	RRM	coord: 75..158 score: 11.05946
IPR012677	Nucleotide-binding alpha-beta plait domain superfamily	GENE3D	3.30.70.330		coord: 76..152 e-value: 4.9E-12 score: 47.6
IPR035979	RNA-binding domain superfamily	SUPERFAMILY	54928	RNA-binding domain, RBD	coord: 69..152

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Carg05027-RA	Carg05027-RA	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006396	RNA processing
cellular_component	GO:0032991	protein-containing complex
molecular_function	GO:0003723	RNA binding
molecular_function	GO:0003676	nucleic acid binding