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Carg05017 (gene) Silver-seed gourd (SMH-JMG-627) v2
Overview
Sequences
The following sequences are available for this feature:
Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.AAGAGAAACTTTCAAGCTGAGGCGCGCTTGAAAAAAATGGCGTCCGCAACTGCAACGGTGGCCAACATCGCTTTAGAATTCCGGCGGCCAGTATTCACCAAAGTAAGTAATTCTATCCATATTCTCAGTAGCTTAACCAATGAATCGAATCTCGAAGCTCCACCGCATTTTTCCGCCTTCCTTCCGATATGTTTGGGATATTAGCATTTTCAAATTATTTTTTGTGTTGCAGGTTCCTGTTAATGGCCGCCGCCGCAATGCTCTGGTTTATATGAACTTCGGAGGCGTTGAATTTGTAAATGTACAGGATAGGCTGTGTACGAGGTAAACATGTATTTTGATTTTTTTATTTGTTTATTGAGCGGTGTAGTGATGGATATTGCTTGTTCAGTTTCGATTTGGTGAATTGTGCATAGAAACTGATGTATAGAAGTAGGAACGTTTCTTCATTTCCAGGTCCTCAGTTTCTTATAGTCCCCTTGTAGTTGGTTCCAGATTTTTGTCCAGACCGATGGCCATAGGTAGTTCAGGTAATTCTGATTCTAGTCATGAACTCCAGTATGTTACTATTTAGCCTATGTATATTCAAATTTGTAATGGTTTAGACCTATTGTGAACTACGAGGACTAAATAATGTTCATTGACCACATCGTTACAAGTTTTAAAATACAGGAATCAAATTGTTCATGGACCAAATGATCATCAAATGTATTTTTTAACTTTATTTTTCTTCTTCTTTTCTTTCAGAATTGATAACCATTTGGTATTCAAAGTATAAGCTTATAGACATTACTTCCACCTGTGAGGTTCTTTGTTTTGTTATCTGCCTTCTAAAAAGTGTGTTCAAAATTCAAGCCAAATTTGATTTTGTTATTGGAATTGACTAAGAATTTAAATGTTTCTTTAAGAAAGATGGAAACCATAGTAAAGAATTTGTTAGAAAATAAGCATAAACTACATAAACGAAAAGCTAGAAACAAAATCGTTATTGATTCGGGTCATAGTAATTTGGAACCTATGACAAAAGTAGGACAGTTTTTACCAGTAAATCTTGTCTTGCCTGCACTCAGAAGATATTAGTTTCTTCTATATCATGTTTCAAAAAAATTGTGTTGAGTATATTGCAAATCGTGTTTAAGAAACACAATGATGGATTTGGTAAAAGTTATCTCTGTTTTGTTGATCTGTTTTGATGTCATAGGTTTGGAGGCAGCCATCACAGATTACAAAGGTGCTATAACCTTAAAAAATGCTAAAATAGTTGTAGAATCTGAGGATGAAAACAAGATACAGGTAACACTACCTATGTGAACTAGTTGTAGCATGCATAACATTTTTGGTTGTAGCATAGAGTTTTACCACTTTGATTTTCATCCCAAAGGAATTTACATCTAATACTTCTATAGCATTTTAGAATACTTTCCTCTGACAAGTTGTTGAAGATCTCATTCTGCCCGTAAACTATTCAACTTCGTTTCTAGTTTCGCTTTCAAGAGTAGATTTAGTGCTGTTTGATGCATGCTGATACAAATCTTACAAGATGATATGTATATTTCATATTGGAAATTTGGTGGAAGCTTTTATCCTCTTAAGTCATATAAATTATACATATAGTTCCCCATATGAAATACACATCCTACCAAATGTATTTATATTTCATATGGCAAAATGGAGGCTAATCTATTACTTAGGCCTTGCATTCCAAAACTTGATAGAACATGGTTTATTTTATTTATGAACAAGATGGTAAAACTTAGAGGGATAATCAGAGATTTCTCTTCCCCCCAACTGGCAACTACCATACTTAACTCATGAAAAGCTTACATCCTTAAGCGACTACCGTCTCGTTATCTATTCTCTTGCTCTCCCAAACCTCACTTTGTTACAACTTGTGCCCACGGTAGGAAATCAAGATGTAAGGATTGGGTACATATCTTTGATAAATGTCTAATGAAATCTAATGAACAGCTAAGAGTGGACTTGACTGGGGATGAGACGCAAAAGGTATTCGATCAGGTTTTGACGAATCTGGCCCGCTCAGCCCCGCCGATGCCAGGATTTCGTAAGCAAAAAGGAGGTAGTACCGTGATTTTCCTCCCCCCTTCACTGTGAATGTTGTTACAACCGTTCATTCATACTGTATAGACAAGCATGGGAATTGAGAAGTACCGTTTCTATAATTACAAGTTCATATATGTAGCTGCTTTTACATCTCCTAAATTTTTATGTTTAGTAACAGATGACCTGACTTTATATGGTTTCTAATGTTTTCGTGTTTTCATGCCTGTTGATGCTTGGCCAGGGAAAACTTCAAATGTGAGTTGCTTCTCTTTGCCTTTTCAACTTTCCTCTTTGGGTTTCCAAGTACTTTTAAGTTATGTCTTTTTTTTCTCAATATCGTTCTATTCTTATACATATTGTTCTATTCTTCCCCAAGGTTTCTATTTGTAAATAACGAATTCCTTCAGGTCCCAAAAAGCTTCCTCTTAGAAGTCCTTGGTAAGGATCGGGTCACAAAGTTCGTCATACAAGAAATATTAAACTCAACTATGGCAGATTATGCAAAGAAGGCAAGTTGTATCCTCATTGCTTTGCTCCTTTCTTATACCTACTGCCTGTGTGCTGATTGTAATTTGGGAGCTGTTTTTGAATTGGTTTTCCTAGATGCCTTTTAGAAGTTAATTATATTGGGTATATTGAAATCACTATTCGTTAACTATTTACAAACTTATAATTTTGATGATTGTGTCTGTATAGTTTCTATATCTCTATGTTTTTAAAAGTTTCAATTGTGATTTTACGTGAAAGAGCGTTACCATCATTAAGCTGATGACATGACACATGAGATCCCACATTAGTTGGGGAGGAGAACGAAACATTCTTTATAAGGGTGTGGAAACCTCTCCCTAGCAGAGGCGTTTTAAAAACCTTGAGAGAAGTCCAAAAGAGAAAGTCCAAAGAGGAGAATATTTGCGAGCGGTGGGCTTGGGCTTGGGCGGTTACATGACTTGTCTACTGTGCATATATTTTGTTAATTTGGCACAACGTAATAGACAAATGATAGAAAGAAGTCAAACAATTAGATAAAGGAGGACGTAGTTTATGAAATGAATTTGATACAGCTCGTTTTTCTTTTGTTTCGACTCCAACGCAGGAAAATATAAAGGTGAAGGACAAGATGGTTAACACAACTCAAACAGAAGATGAACTGAAAGCGTTGTTCAGACCTGGAAAAGAGTTTGGTTTCAATGCTATACTTGAACTTGAACTTGAACTTGAACCTGAACTTGAACCTGAACTTGAGTCTGCTTCAGAGGATGAAAATTGAGCCAAACAGGTCCCCCTTTCCAAGTGAAGATTTTCTCCACTTGGTTCTTTCTTGGCCCTCTTTCAAAGTTTTGGAAATATTTTGTTGAAGGAATAAATATTTGATTATCCATAGTGATGCATTGATCAGTATTAATGAGTTCTAGTTACT AAGAGAAACTTTCAAGCTGAGGCGCGCTTGAAAAAAATGGCGTCCGCAACTGCAACGGTGGCCAACATCGCTTTAGAATTCCGGCGGCCAGTATTCACCAAAGTTCCTGTTAATGGCCGCCGCCGCAATGCTCTGGTTTATATGAACTTCGGAGGCGTTGAATTTGTAAATGTACAGGATAGGCTGTGTACGAGGTCCTCAGTTTCTTATAGTCCCCTTGTAGTTGGTTCCAGATTTTTGTCCAGACCGATGGCCATAGGTAGTTCAGGTTTGGAGGCAGCCATCACAGATTACAAAGGTGCTATAACCTTAAAAAATGCTAAAATAGTTGTAGAATCTGAGGATGAAAACAAGATACAGCTAAGAGTGGACTTGACTGGGGATGAGACGCAAAAGGTATTCGATCAGGTTTTGACGAATCTGGCCCGCTCAGCCCCGCCGATGCCAGGATTTCGTAAGCAAAAAGGAGGGAAAACTTCAAATGTCCCAAAAAGCTTCCTCTTAGAAGTCCTTGGTAAGGATCGGGAAAATATAAAGGTGAAGGACAAGATGGTTAACACAACTCAAACAGAAGATGAACTGAAAGCGTTGTTCAGACCTGGAAAAGAGTTTGGTTTCAATGCTATACTTGAACTTGAACTTGAACTTGAACCTGAACTTGAACCTGAACTTGAGTCTGCTTCAGAGGATGAAAATTGAGCCAAACAGGTCCCCCTTTCCAAGTGAAGATTTTCTCCACTTGGTTCTTTCTTGGCCCTCTTTCAAAGTTTTGGAAATATTTTGTTGAAGGAATAAATATTTGATTATCCATAGTGATGCATTGATCAGTATTAATGAGTTCTAGTTACT ATGGCGTCCGCAACTGCAACGGTGGCCAACATCGCTTTAGAATTCCGGCGGCCAGTATTCACCAAAGTTCCTGTTAATGGCCGCCGCCGCAATGCTCTGGTTTATATGAACTTCGGAGGCGTTGAATTTGTAAATGTACAGGATAGGCTGTGTACGAGGTCCTCAGTTTCTTATAGTCCCCTTGTAGTTGGTTCCAGATTTTTGTCCAGACCGATGGCCATAGGTAGTTCAGGTTTGGAGGCAGCCATCACAGATTACAAAGGTGCTATAACCTTAAAAAATGCTAAAATAGTTGTAGAATCTGAGGATGAAAACAAGATACAGCTAAGAGTGGACTTGACTGGGGATGAGACGCAAAAGGTATTCGATCAGGTTTTGACGAATCTGGCCCGCTCAGCCCCGCCGATGCCAGGATTTCGTAAGCAAAAAGGAGGGAAAACTTCAAATGTCCCAAAAAGCTTCCTCTTAGAAGTCCTTGGTAAGGATCGGGAAAATATAAAGGTGAAGGACAAGATGGTTAACACAACTCAAACAGAAGATGAACTGAAAGCGTTGTTCAGACCTGGAAAAGAGTTTGGTTTCAATGCTATACTTGAACTTGAACTTGAACTTGAACCTGAACTTGAACCTGAACTTGAGTCTGCTTCAGAGGATGAAAATTGA MASATATVANIALEFRRPVFTKVPVNGRRRNALVYMNFGGVEFVNVQDRLCTRSSVSYSPLVVGSRFLSRPMAIGSSGLEAAITDYKGAITLKNAKIVVESEDENKIQLRVDLTGDETQKVFDQVLTNLARSAPPMPGFRKQKGGKTSNVPKSFLLEVLGKDRENIKVKDKMVNTTQTEDELKALFRPGKEFGFNAILELELELEPELEPELESASEDEN Homology
BLAST of Carg05017 vs. NCBI nr
Match: KAG7025387.1 (hypothetical protein SDJN02_11882 [Cucurbita argyrosperma subsp. argyrosperma]) HSP 1 Score: 421.4 bits (1082), Expect = 4.8e-114 Identity = 220/220 (100.00%), Postives = 220/220 (100.00%), Query Frame = 0
BLAST of Carg05017 vs. NCBI nr
Match: KAG6592974.1 (hypothetical protein SDJN03_12450, partial [Cucurbita argyrosperma subsp. sororia]) HSP 1 Score: 407.1 bits (1045), Expect = 9.4e-110 Identity = 219/240 (91.25%), Postives = 219/240 (91.25%), Query Frame = 0
BLAST of Carg05017 vs. NCBI nr
Match: XP_022960370.1 (uncharacterized protein LOC111461115 [Cucurbita moschata]) HSP 1 Score: 375.9 bits (964), Expect = 2.3e-100 Identity = 208/240 (86.67%), Postives = 209/240 (87.08%), Query Frame = 0
BLAST of Carg05017 vs. NCBI nr
Match: XP_023513631.1 (uncharacterized protein LOC111778179 isoform X1 [Cucurbita pepo subsp. pepo]) HSP 1 Score: 375.6 bits (963), Expect = 3.0e-100 Identity = 206/240 (85.83%), Postives = 210/240 (87.50%), Query Frame = 0
BLAST of Carg05017 vs. NCBI nr
Match: XP_023513632.1 (uncharacterized protein LOC111778179 isoform X2 [Cucurbita pepo subsp. pepo]) HSP 1 Score: 375.2 bits (962), Expect = 3.9e-100 Identity = 206/240 (85.83%), Postives = 209/240 (87.08%), Query Frame = 0
BLAST of Carg05017 vs. ExPASy TrEMBL
Match: A0A6J1H8V8 (uncharacterized protein LOC111461115 OS=Cucurbita moschata OX=3662 GN=LOC111461115 PE=4 SV=1) HSP 1 Score: 375.9 bits (964), Expect = 1.1e-100 Identity = 208/240 (86.67%), Postives = 209/240 (87.08%), Query Frame = 0
BLAST of Carg05017 vs. ExPASy TrEMBL
Match: A0A6J1KVH6 (uncharacterized protein LOC111497577 OS=Cucurbita maxima OX=3661 GN=LOC111497577 PE=4 SV=1) HSP 1 Score: 367.9 bits (943), Expect = 3.1e-98 Identity = 202/239 (84.52%), Postives = 206/239 (86.19%), Query Frame = 0
BLAST of Carg05017 vs. ExPASy TrEMBL
Match: A0A0A0K988 (Trigger_N domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_6G086160 PE=4 SV=1) HSP 1 Score: 303.5 bits (776), Expect = 7.1e-79 Identity = 168/227 (74.01%), Postives = 179/227 (78.85%), Query Frame = 0
BLAST of Carg05017 vs. ExPASy TrEMBL
Match: A0A1S3CBN2 (uncharacterized protein LOC103498959 OS=Cucumis melo OX=3656 GN=LOC103498959 PE=4 SV=1) HSP 1 Score: 299.3 bits (765), Expect = 1.3e-77 Identity = 168/228 (73.68%), Postives = 178/228 (78.07%), Query Frame = 0
BLAST of Carg05017 vs. ExPASy TrEMBL
Match: A0A6J1DRL2 (uncharacterized protein LOC111022553 OS=Momordica charantia OX=3673 GN=LOC111022553 PE=4 SV=1) HSP 1 Score: 287.0 bits (733), Expect = 6.8e-74 Identity = 160/222 (72.07%), Postives = 171/222 (77.03%), Query Frame = 0
BLAST of Carg05017 vs. TAIR 10
Match: AT2G30695.1 (FUNCTIONS IN: molecular_function unknown; INVOLVED IN: protein folding, protein transport; LOCATED IN: chloroplast stroma, chloroplast; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Trigger factor, ribosome-binding, bacterial (InterPro:IPR008881); Has 253 Blast hits to 253 proteins in 72 species: Archae - 0; Bacteria - 138; Metazoa - 0; Fungi - 0; Plants - 40; Viruses - 0; Other Eukaryotes - 75 (source: NCBI BLink). ) HSP 1 Score: 87.0 bits (214), Expect = 2.0e-17 Identity = 54/176 (30.68%), Postives = 94/176 (53.41%), Query Frame = 0
BLAST of Carg05017 vs. TAIR 10
Match: AT2G30695.2 (FUNCTIONS IN: molecular_function unknown; INVOLVED IN: protein folding, protein transport; LOCATED IN: chloroplast; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Trigger factor, ribosome-binding, bacterial (InterPro:IPR008881); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). ) HSP 1 Score: 87.0 bits (214), Expect = 2.0e-17 Identity = 54/176 (30.68%), Postives = 94/176 (53.41%), Query Frame = 0
The following BLAST results are available for this feature:
InterPro
Analysis Name: InterPro Annotations of Silver-seed gourd (SMH-JMG-627) v2
Date Performed: 2021-10-25
Relationships
The following mRNA feature(s) are a part of this gene:
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
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