Carg05016 (gene) Silver-seed gourd (SMH-JMG-627) v2

Overview
NameCarg05016
Typegene
OrganismCucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
DescriptionUnknown protein
LocationCarg_Chr08: 1043606 .. 1044363 (-)
RNA-Seq ExpressionCarg05016
SyntenyCarg05016
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGGTGATTAGAGTTTTACTAGCTAACTCCTAGCAGTGAACTATCTAGATTAAATGCTCTAGATAGTTGGTTGATGTACGAGATCGTTTCATTTATGTTTATGATATTAGTTTTCTATGTGGAGATCATTAAACAATCTTCAACTAACTAATCGTAATGGATGAAAACCGTCAATACTTTATTTTAAAAAAACAAAAATTTCAAAATTACAAGGGTATTTATTATTATTATTTTTTTAATTTAAGAGTTTTTTTTTTAGCATAAGGGGTAAAATTTAAAAGATTTTTTTAAATTAATTTAGTAAATTTTCAAACAAAACTAAATTGGAACGTTGTTTTTTAATACTAAATTTAAATATTACAAATGAAAATTTTAGAATAAAGTCGATACCCTATAATATTTGGGATATAAATGATAAAATAAAAATTTAAAGATAAATTAAATTGAAACATATTTTTTAAATAATACCGATAATAAAAAATAAAAAAATAAAATTTTTCAATCCAATCATCCCACTTTGTTAAACCCTAAACCTTTCATCTTCCTCTCACTCTCACGTGCTCCCCTTCTTCTGTTTCCCGCCGGCTCATCCTCCCCTTCAGCAGCTCAGTATCGCTGCCGTTGCACTACCGCCTCTCCGATTCTGTGCCGCCGTAGCCTCCTCAAGCGTATTGCGCCGGTTTTCGACGCTCTTGTTGTCACTGGTATTCCTCCAGTCTCCTTCTATGTCTTTCTTCTCCCTCGAAACTCAAATTAG

mRNA sequence

ATGGCAGCTCAGTATCGCTGCCGTTGCACTACCGCCTCTCCGATTCTGTGCCGCCGTAGCCTCCTCAAGCGTATTGCGCCGGTTTTCGACGCTCTTGTTGTCACTGGTATTCCTCCAGTCTCCTTCTATGTCTTTCTTCTCCCTCGAAACTCAAATTAG

Coding sequence (CDS)

ATGGCAGCTCAGTATCGCTGCCGTTGCACTACCGCCTCTCCGATTCTGTGCCGCCGTAGCCTCCTCAAGCGTATTGCGCCGGTTTTCGACGCTCTTGTTGTCACTGGTATTCCTCCAGTCTCCTTCTATGTCTTTCTTCTCCCTCGAAACTCAAATTAG

Protein sequence

MAAQYRCRCTTASPILCRRSLLKRIAPVFDALVVTGIPPVSFYVFLLPRNSN
Homology
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BLAST of Carg05016 vs. NCBI nr
Match: KAG7025386.1 (hypothetical protein SDJN02_11881, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 107.5 bits (267), Expect = 3.6e-20
Identity = 52/52 (100.00%), Postives = 52/52 (100.00%), Query Frame = 0 

Query: 1  MAAQYRCRCTTASPILCRRSLLKRIAPVFDALVVTGIPPVSFYVFLLPRNSN 53
          MAAQYRCRCTTASPILCRRSLLKRIAPVFDALVVTGIPPVSFYVFLLPRNSN
Sbjct: 1  MAAQYRCRCTTASPILCRRSLLKRIAPVFDALVVTGIPPVSFYVFLLPRNSN 52

The following BLAST results are available for this feature:
BLAST of Carg05016 vs. NCBI nr
Match NameE-valueIdentityDescription
KAG7025386.13.6e-20100.00hypothetical protein SDJN02_11881, partial [Cucurbita argyrosperma subsp. argyro... [more]
BLAST of Carg05016 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of Carg05016 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of Carg05016 vs. NCBI nr
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Carg05016-RACarg05016-RAmRNA