Carg04993 (gene) Silver-seed gourd (SMH-JMG-627) v2

Overview
NameCarg04993
Typegene
OrganismCucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
DescriptionUnknown protein
LocationCarg_Chr08: 888557 .. 890041 (-)
RNA-Seq ExpressionCarg04993
SyntenyCarg04993
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSpolypeptidethree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
CTTAATTCATACGTTTCACCTTCTTCTTCAAGTATAACAAGTGCATATTTGTAGGATTGAACTCGATTCTAGTTCTTAACTTGTTCATCTTCTTGGCTCGGTACCAGTTCTTAACTTGTTGATCTTATTGTTTCAATAATTGGCTTGTTGATTTTATTCAATTGATCTTATTCGGCTTGTTGATTGCTCTTGTATTGATCTTGGTTTCTTGATCTTCTTGACAAGTTTATCAAAATCTTGAATTATTCTTACGCACTTAATAGTGTTTAAGATCATGCCTTCAACGTTGTTGTGTTTTCAAAGTCTTTGGTCTTCAAGTTCTCAATCTTCTTGGAGTCTTCTGAATTCTCTAATTTCTCAATCTTCTTGGACTATTCATAGAGCCTTTCTATGGGCATTGTATGCGTTTGGACTGCTTTGGGTTTTGGGCCAAATCGTCGTTTAATGACCTAACTTTTTATGACTGTAGGTGACCGTAAAATTCTAAGAAATTGGTAGAAAGCATGAGTTTTCTCTTCTAAAATTTTGTCATTTCGAGCAATATAATGCCATGTTAGGATTCATTATCCTACCAACAGGGATATGGAGATCTTCTGGAAGGGTGGAAGAAGCTTGAAGAAGAAGAAATATCGGTAAGCTTTTCAAAACCTCCTGCTGTGGGATTTTCGATTCTGAAGTTTTTACTAATGCTGAAGTGACTTCAGTTCTTCATGAATTCAATCTGGTGTGCAAAGCGAAGAACCACCCACTCGTACTTGGGAAAATACTTCCACCAAACCTTGTTTTAAGTCTGAATTTTGATTATTCTTCAAAAGAGACGCAAATGCTCTTCCCCCTTAGGTCATACTTACATCGGTGTTGTTGGGCATTCTGTGATATGAATGAAATATTGTGAGACCATGATAAAAATTGGCGAAGAGCTAAGAGAACGTAGCTTGATCTCTAAGTTTAGAGATGTGAGATTCCACATTAGTTGGGGAAGAGAACGAACCATTCTTTATAAGGGTATGGGAATCTCTCCCTAGTAAACGCGTTTTAAAAATCTTGAGGGGAAACTCGAAAGGGAAAATTCAAAGAGGACAATATCTGCTAGTGGTGGGCTTGGGGCGTTACCAGAGATGTTCAAGATGATTATAATCTATTGGAAACAAAGCTCCAAAAGAGGATTGGTTGAAATGGGGTGATAGCAATACTAATTGTTTCCTCTAGAAGGCAACTGGGAGGAAGAAAGAGAATAGCACTGAAGCCATTTTTGATGCCTTGGGAGTATGGCAAGAGGAAGTTACAAAAATTTCCCTGACTTTTGTGGATTATTTTTAAAATATTTTTGCTTCAAATGCTCCTTTGCAGATTGATGTGAACAGGGTCATTGATTGCATTTCTTCAAGGGTTACTTCAGAAGTGATATCAAAAGGAGGTGGAAAGAGCAATAAAACAATGGATTCCCAACTTTGTTCTACCAAATACTTTGAAGATTTGCCTTGA

mRNA sequence

CTTAATTCATACGTTTCACCTTCTTCTTCAAGTATAACAAGTGCATATTTGTAGGATTGAACTCGATTCTAGTTCTTAACTTGTTCATCTTCTTGGCTCGGTACCAGTTCTTAACTTGTTGATCTTATTGTTTCAATAATTGGCTTGTTGATTTTATTCAATTGATCTTATTCGGCTTGTTGATTGCTCTTGTATTGATCTTGGTTTCTTGATCTTCTTGACAAGTTTATCAAAATCTTGAATTATTCTTACGCACTTAATAGTGTTTAAGATCATGCCTTCAACGTTGTTGTGTTTTCAAAGTCTTTGGTCTTCAAGTTCTCAATCTTCTTGGAGTCTTCTGAATTCTCTAATTTCTCAATCTTCTTGGACTATTCATAGAGCCTTTCTATGGGCATTGTATGCGTTTGGACTGCTTTGGGTTTTGGGCCAAATCGTCGTTTAATGACCTAACTTTTTATGACTGTAGGTGACCGTAAAATTCTAAGAAATTGGTAGAAAGCATGAGTTTTCTCTTCTAAAATTTTGTCATTTCGAGCAATATAATGCCATGTTAGGATTCATTATCCTACCAACAGGGATATGGAGATCTTCTGGAAGGGTGGAAGAAGCTTGAAGAAGAAGAAATATCGATTGATGTGAACAGGGTCATTGATTGCATTTCTTCAAGGGTTACTTCAGAAGTGATATCAAAAGGAGGTGGAAAGAGCAATAAAACAATGGATTCCCAACTTTGTTCTACCAAATACTTTGAAGATTTGCCTTGA

Coding sequence (CDS)

ATGCCTTCAACGTTGTTGTGTTTTCAAAGTCTTTGGTCTTCAAGTTCTCAATCTTCTTGGAGTCTTCTGAATTCTCTAATTTCTCAATCTTCTTGGACTATTCATAGAGCCTTTCTATGGGCATTGTATGCGTTTGGACTGCTTTGGGTTTTGGGCCAAATCGTCGTTTAA

Protein sequence

MPSTLLCFQSLWSSSSQSSWSLLNSLISQSSWTIHRAFLWALYAFGLLWVLGQIVV
Homology
[Close]
BLAST of Carg04993 vs. NCBI nr
Match: KAG7025363.1 (hypothetical protein SDJN02_11858 [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 109.8 bits (273), Expect = 7.9e-21
Identity = 56/56 (100.00%), Postives = 56/56 (100.00%), Query Frame = 0 

Query: 1  MPSTLLCFQSLWSSSSQSSWSLLNSLISQSSWTIHRAFLWALYAFGLLWVLGQIVV 57
          MPSTLLCFQSLWSSSSQSSWSLLNSLISQSSWTIHRAFLWALYAFGLLWVLGQIVV
Sbjct: 1  MPSTLLCFQSLWSSSSQSSWSLLNSLISQSSWTIHRAFLWALYAFGLLWVLGQIVV 56

The following BLAST results are available for this feature:
BLAST of Carg04993 vs. NCBI nr
Match NameE-valueIdentityDescription
KAG7025363.17.9e-21100.00hypothetical protein SDJN02_11858 [Cucurbita argyrosperma subsp. argyrosperma][more]
BLAST of Carg04993 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of Carg04993 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of Carg04993 vs. NCBI nr
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Carg04993-RACarg04993-RAmRNA