Carg04980 (gene) Silver-seed gourd (SMH-JMG-627) v2

Overview


Name	Carg04980
Type	gene
Organism	Cucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
Description	RGG repeats nuclear RNA binding protein A-like
Location	Carg_Chr08: 830408 .. 839678 (-)
RNA-Seq Expression	Carg04980
Synteny	Carg04980

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

AATTTAGGTCAGTCGTGGATATTTTGCGTCTACTCCCATTAGTCACTCACTCGTCCATTGCGGCTAGGGTTTTTTGTTTTCCTCTATCTGACTCCTCTGTTTCTTGTTCTACAGATTCCTTGTTCTTTCATTGCTTAGATTCATGGAGCTCTTGTTAAGATAGGGTTTTCTGGTCGCCTTTCTACGAGTGGAATTTCCTGTTTTTGAGGTCTTTTTTGGGGTATTTGTTTTCGATATAGTTTGGAAATGGCGACCGTTAATCCATTTGATTTGTTGGGAGATGATGACGCCGAGGATCCGTCGCAGCTAATTGCGGCTAAGAAGGTGGCGGCAGTGACGTCGCCGGCGCCGAAGAAAGGTCCTGCCCAGAACAAACCGGCGGCTTTGGGGGCTCAGCAGAACAAGCCTGCTAGTCTTCCTTCAAAGCCTCTTCCTCCTGCACAGGCTGGTGAGATTCTTCGTTTCTAAATTTATTGTTTGATACCGAATATGGATTTTTTTCTTTTAGATTTTGGTTGATTGATTTTACGTTTTCTGATATTGGTTGTTGTTTCGTTTTTTACTGTCTGGCGTTCTTCTCTGAGACTACGCGATATTGAAGGGTGATAACGCTATTTAATTTGGGTGAAAGTATCATAATTACCTTGTTCTTCAAAAGATTTGTAGGGTGTAACCGATTTAGTTATATTGTGTATTGGAGTTCAAGTTTGTTTGTAATTTGGATAATACCCAATGAGTTGTTGGTTTAGCTACTATGATTGGGACATTATAGAAGAGAAAGTAAAATACTTGCTTTGGAAGAAAGCTGATATCGACAATGCATTTGTGGTTAAATAAACTAGTTTACATAGCTTCTATTTAAATGTAAGGATCTATAATAAACTTTAGTTTTCTATTATAATATATTGTTTTTGTCCATGGTGATTATAAATTATTGAATTTATTGATATTGTTTACAAGTTAAACATTGTCCAATTGAACATGTGATTCCTTATTGATTTGGGTTCTTTTGCGGGAACTTAGAATTCTGCAATCAATTTTCTTATGTTATTCTTTCGTTTCTATCCTTTTGTCATCCTATTGGATTCAAATTTACCAATCTACTATTGCTCTAGCTATCTACATCTTATGAGTTTTCATCAGTGTTATACATTGAGTGATCGAGATGAATTTTTTCTTTCTATGAGTAGTAAGAGAAGCAAGGAATGAAGGCGGTCGTGGAGGTCGTGGCAGTGGGCGAGGTGTAGGGCGTGGTTATGGGCGAGGCCGTGAAGGCAGTGGCTTCGTTCGTGGTTCTTTCAATAATGAGAACATCAGTGCAGCTGAAGATGGAGAGACAGGAAAGACAACCGAAAGGCGTGGGTATGGTGGTCCACGTGGTCGTGGTGGCCGACGTGGTGGTTTCAATAATGGAGAGGCTGCTGATGGGGAGCGCCCTCGTAGAGTATTTGAGCGCCACAGTGGAACTGGCCATGGGTAAGAGGCTATTCTTTAAAAGTTCATATTACACACCCCTGCTGTAGATTCTACACTTTTTTGACGCTTTCGTCCGGATTCTATGCCTAGAAATGAATTTAAACGTGAAGGATCTGGTCGTGGTAATTGGGGAAGGCCAACTGAAGAATTTGCTGAGTAAGTACATTTGTATACCTGGGGGTGTGTGGATTTTTATGCTTGTCTTATTATCTCTTATGATGATAGGGTTATTTTTCCCTCGAAAATTAGTTGTACCTTAGATTAATGTCTTATATCTAGGACTGTGGAGGAAGCTGTTAATGAAATGGAAAAGAACATGGGTGATGAGAAGCCTGTTCAAGAGGATAATGCTGAAGGAGTCAACACAGAGAACGCTGCTAAAGAACCGGAGGAAACAGAACCAGAAGACAAGGTTAGCATGTTCAGTTTTTAGTACATTTCCCTTAAGTTTGGATTCAACTATTTCATTTGTCCTTTATTTCCTTGTGATTGAAGATTAACATGCATTTTGCATGCACGTCAAGTTGAGTAGGCTTTATTATTTTACTTTTAGTATCATAAAGTTAATACATGTAAGAGTTGCAAATGAGCTTGGTGGGCTCGGATTCTGAACTCCATTGTACTGGTTGTCTTGATTTTGAATCTAATTTACTCCTTTTTTCCTGATGCAGGAAATGACTCTGGAGGAGTATGAAAAGTTGCTTGAAGAGAAAAGGAAGGCCCTTATGGCACTAAAAACTGAGGAAAGGAAGGTGGATCCAAAAGAATTTGCATCCATGCAACAACTTTCATGCAAGAAGGAGAACAACGACATATTTATTAAATTGGTACGCCTACTTTGTCTTTTTGGTTAATTATCTATGGATCTGATGACCCTTGGCTTCTTGGTAGTTCAAATATATAATTTTCCATTTCATCTTCATATGTTGTTTCACTTGTAGGGATCTGAGAAGGATAAGCGAAAAGAGATTGCGGATAAAGAAGAGAGAACTAAGAAGGTATTATTACCCTCATCTTCTTAGAAGTTTCCTTGCCAATTAAATTGTTTACTCAGCTTTGATGTCTAGCAGAATTTCATGTCTTAGGGCAGCCATGAGCTCTTTTTTCTATATAGAGGCTAGTTGCAAGTCATGAGGCGATATTGCGTCTCAAGACTAGTTTTGAACTTCAAAATTAATAAAATAACAATAATATAAAAAAATTCCTATTTAACGAAATATATCATAAATATGTAAAGTTCTCGATTGTCCATCGATATACATTAACTTCCATGAGTTAATAATTACAAATCTTTTTGGCCTGTCTTTTAGTGTCCTTCTACTTCTTAGGCAGAAAGTACTGGGTTTTTTCTTACAATAACGTGCTAGATTGTTTGTTGATTATGAATATTTGTCTTTTCTGCTCTTGTCCCACTTAACACAATCCTGCCACCGGCTACACCAGCACTATTTTGATTTTTCTGTAAAGTCGATTATGCTGAGAAGCATGCGACTTTTACGACTCAATAGAGTACGCATAGAGGAGAATGCCTCTTGTTCAACATATGCCATCCTCACAACATGCTTTCCTCCAAGCTTATATTTTGAAACCATTGTTGTCCAGCCAGTACAAAATGCTTGACTAGGATGTTCTATTGTCTATTCGGAACCTACATTAAGAAATCAGATTGATTCTAGAATTTAGCTGCATTACCTATTTTTTCAGAATTATACCACATGTGGGGTAGAGGTTTGGATTGACGGCCTCTTAGAGAAGGCAGAGATGAATTAACTTAACTCTTGAACTATGCACTGTGATTTCTAAAAAAATGAATTTAGTTCTATGTACTTCAGGTGATAGAATTTACTTCCAAATACATTTCGCACTAATCTGTGGTTGTTTTAACTTCTAATTGGGCCCATTAGAGTAGAGGTGATTTATTTTGCTTTCCCTGGAACATTCTTTGGGCCATTTACGTTAGTTGGTGTACGTACATGAACAAAACACCAAATTCTGCTTTTCCTTGTATAACTTTGAAATGTTTTCTCCAAATTGGGCATGTTGGTTTTTTCAAATTCCTGAAAATATGTTCATAGATCACGTAAAAGGTTAAAATCACTGATACTTCCTTTGTTTTGGTGTTTTTAGTCTTTGAGCATCAATGAGTTCTTGAAGCCTGCGGAAGGTGAGAGACACTACGGCTCAGGTGGCCGGGGAAGGGGTCGTGGTGGCCGTGGTTCAAGGGGAGGATACAGTGGCAACTCGATCAGCAACGTTCCAGCCCCATCCATTGAGGACCCTGGGCAGTTCCCTACCTTAGGTGCGAAGTGAAGTTCTCAATAAAATTTCCCTTGAAACTGTGTTTTTGATCTGGGGCAGCAAATTGACTTCAATAATATAGTCTCTCCTAAATGATAAAAGGAAAAAAAAAAAAATGTAAATTGTCAGTCCTGTGTTTTTGCGTTGTATGTTTCCAACTTTTGTTTCAGACTGTCTGCTAGAACAAACTATTTATGACCTTTTCTTTTAGCCCCGCTGGTATACCGTTTATCTCCCAATTGTGTTGGACTGAGTGGGGCTGTTGTTTTTCATCTGCCCCTTTATGCTTCATGCTTCAGGTAATTGGAAATTTTCATGTGGAACACTGCGGTTGGATCGCGGTCGATAAACCTCTTATTATGCATCATACAACTCTTGTTGTTGCATCGATCGATACTTTCTCTTGGATTGGAAACTTTCGAACTTCCTTCACTTGTCTTTTTTGGGCTTTCTCGCGTCTGTTAGGGAGAGCTTTCCACTCACTTGGAATGTTTCGTTCGTTTTCTCGTTTTCCTCTCCAATCAAAGATATCCCACACTTGAGAATTAGTGAGTGAGTTAGGATAAATTTATCTCGTTCTTGTTCTAGGAGGGAAAGTTAAAGAATGTTTTTGTATTATTGTGATGAATGTAGCATTACATTTTCATATATTTATGGATCTAATATTGATATACAAGACCATCATAAAAAAATATTAACAAAATATGAATATAATATTAATAAAATATAATTTTGATTTTTTTTTTAATTATTATTTTTTGCCAAAATTAAAACAATATCTATAAACATCAACAAATTTATGCCAAGACAAAAGAATGATTCTCGGTGTCAAAATGGCAGGAGTAAATTTGTAAAATTACCAAATAAGTTCGAATGACGCGAATAAATGGAAGAATTTAGGTCAATCGGTTACTCTTTTTTTGCGGCTAGGGTTTTTCCTTTTCCTCTATCCAATTCTCCTGCTTTTCTACAGATCCCTTGTTCTTACGATTCTTTGATTCATGGCGCTCTTATTGAGATAGGGTCTTCTGGTCGCCTTTGTTCGAGTGGAATTCCCTGTTTTTGAGACTTTTTTTTTTTTTTTTTTTCTTTGGGGTATTTGGTTTCGATTTAGTTTGGAAATGGCGACCGTTAATCCATTTGATTTGTTGGGAGACGATGATGCTGAGGACCCGTCGCAGCTAATTGCGGCTAAGAAGGTGGTGGCGGCGCCGCCTAAGAAAGGTCCTGTCCAGACCAAACCGGCGGCTTTGGGTGCTCAGCAGAACAAGGCTGCTAGTCTTCCTTCAAAGCCTCTACCTCCTGCACAGGCTGGTGAGATGCTTCGTTTCTAAATTTCTGGTTTAATTTCGAATATAGATATTTTTTTCCAATGCTTTTGGGTGATTGATTTGCAAGTTGAACAACTTGTGATTAGTTACTAATTTTGGGCTATTTTTGCGGTTTATTCATCCTGTTGGATTTAAAATTTATCAACGTACTACTTTTCTATCTATAAACTGCTTATGAGTTTCAATTGGTATGAATTATACATAGTGATTGAGATAATATTTTTCTTACTATGAGTAGTAAGAGAAGCAAGGAATGAAAGCAGTCGTGGAGGTCGTGGCAGTGGACGAGGTGGAGGACGTGGTTATGGGCGAGGCCGTGAAGGCTCTGGCTTCAATCGTGGCTCTTTCAATAATGAGAGCAGCAGTGCAGCTGAAGATGGAGAGACGGGAAAGACAACTGAAAGGCGTGGATATGCTGGGCCTCGTGGCCGTGGTGGCCGTCGTGGTGGTTTCAATAATGGAGAGGCTACTGATGGGGAACGCCCTCGTAGAGTATTCGAGCGCCACAGTGGAACTGGCCATGGGTAAGAGTCTGTTCTTTAAAAGTTAATTTTACACACCCCTGCTGTAGATCTAACTTTTTTGATGCTTTCATTCGGATTCTATGCCTAGAAATGAATTTAAACGTGAAGGATCTGGTCGTGGTAATTGGGGAAGGCCAACTGAAGAATTTGCTGAGTAAGTACATGTGTATACCTTAGGAGGGGGGTTGGATTCTTATGCTTATCTTATTATCTCGTTTATGTCAATGGGGTTATTTTTCTCTCCTCGACAACGAGTTGTACCTTAAGCTTATTGTCTTATGTCTAGGGCTGCTGAGGAAGCTGTTAATGAAACGGAAAAGAACATGGGTGATGAGAAGCCTGTTCAAGAGGATGATACCGGAGATGTCAACGCAGAGAACTCTGCTAAAGAACCAGAGGAAACAGAACCAGAAGACAAGGTCAGTATGTTCAGTTTTTTAGTACGTTTCCCTTGAATTTGACCCTACTATTTCATTTGTCCTTTATTTTCTTGTGATTGAAGAGACACTTGTATTTTTGCTTGCATATCAAAATGAATAGGCTTTATTACTTTACTTTTAGTTTCATAAAATTGATACATGTAAGAGTTGCAAATGATCTTGGTAGGCTTGGATTCTGAACTCTGTTGTAATGTATGACTTGATTTTGAATCTAATTTATGCTTTTTTCCTGATGCAGGAAATGACTCTGGAGGAGTATGAAAAGTTGCTTGAGGAGAAAAGGAAGGCTCTTCTGACACTAAAAACTGAGGGAAGGAAGGTAGATCCTAAAGAATTTGCATCCATGCAACAACTTTCATGCAAGAAAGAGAACAACGACATATTTATTAAATTGGTACTCCTACTTAGTGCTCTTTCGAAGTTTATTATCTGTGGATCTGATGAACCTTATCTTCTTGGTTCTACAAAGTTGGACTTGGCGGTATCATCTTCGTTTGTTATTCCACTTGTAGGGATCTGAGAAGGATAAGCGAAAAGAAATTGCCGAGAAAGAGGATAGAACAAAGAAGGTATTGCTACCACCTCATCTTAGAAGATTTCTTGGCCATTAAATGTTACTTCAGTTAAATGTACGGAAAAATCTTAAAAATCATAGGGCAGTCTTAAAAATCATAGGCCATTAAATGTTTCATAGGGAGGCAAGTTGCAAGTTTTGAAGTGAGATGAGATGCAAGTCTCATTTTGAACTTGATAATATTCAAGTTATATAATAACAATATTATATAAGAAGTCCTATGCAAAGAAATATATTACAAGAAAAAGGGAGAATCTCAACTATCCATCACTATACCTTAGTTTTCATGAATTAATAATCGAAGGTCATCCTCGAAACGGAGAAATAAAGATGGCAAACAAAAAATTTTGCCTTGTCCCCAGTAGATGGAAAAATAACGCTACTCTAGAACCTACAAGCCTGTTTTTCTTCTAAACATGTTTAGATGGTTTAAACAATAAACAAAGAAAAAGAGGTGCATAAAACAGTAAACAAGGAAAGGAAAGGTAAAAAAGGAGACAGTGAGAACTGACATTTTAGCTTTGTTGTTTGTCTCCACCACAAACACTTCTTCTAGCGAGGACAAATTGAGGACAAAATTATGGCTGTCTTTTGGATCTTTTACTTTTTAGGCATAAAGTTTGAGTCTTTTTTCTTGTAAAAAAAGGTGCCAGATTGTGACAATTATATTTGTCTTTTCAGCACTCTTCCCATTAAGCACAAACCCATCTCCAGCCAACAGTAGTATTTAAATTTTTCTGTGATGTCAATTTCGCAGTGGGACATAAGCCCGTTTTCATCTCAAACGTGCATGCGTAGGGGAGTATGCTTTGTGTTCATCATAGGCTAACCTCACAATTTGACGTTGATGTTCAGCCATGATTTTTTTTTTTTTTTCTAGGATGCTCTTTGTTGGATCTATCTAACACTAAAGAATAAGTAGATTTAGTAATTAGATGTTCTTTACTAGGATGCTCTTTATTGGATCTTTATAACATTTAGTAATTAATTGAATCTAATTCAACTAACTTACTTTATTTTAGAACATTATGGGTGGAGATTTGTATTGACTAGGAGTTACACACGACATAACTCTTGAGCTATGATCGTGTGATAGGGGAACTCGAATATAACTTTGCTTTTCATAATTTTAGAGAACAATTATCAGAGGAAAATAAGTACGTTATACAATTGAGCTTTAAAGATTTTTTTTTTTTTTTTTTTTTTTTTTTGTCTTTTACAATTTCATCTTCATCGGGGAAATATACCAACTTTATATTGAAATCAATCAATCTTTAGTTTGATTACTCTATATTTCTAACAAATATAGTATGCACAAGGCTGTGGTTCTAACTTCTAATTGGTCCCTTTAGAGTAGAGGTGATTTATTTTGCTTTCGCTGGAACATTCTTTTGGCCATTTACGTCAGTTAGTCTACAGAAAAAACACCAAATTCTGCTTTTCCCTTCACAACTCTGAAAATTGGAATATATTTCTGTTTTAATTGTACATTATACATTTTGGTAGTTGTAGGAAATGGGTCTATGCAAATTGGAAATAGACCTTGTAAAAGGTTTAAATTACTGATATTTATTTTGTTTTGGTGCTTTTAGTCTTTGAGCATTAACGAGTTCTTGAAGCCTGCGGAAGGGGAGCGACACTATGCCCCTGGTGGCCGGGGAAGGGGCCGTGGCCGAGGTTCAAGGGGAGGAGGAGGAGGATACAGTGGCAACTCGACAATCAATGTTGCAACCCCATCCATCGAGGACCCTGGGCAGTTCCCAACCTTAGGGGCTAAGTGAAACTTCTCAATAAAATTTGCCTTGAAACTGTGTTTTTGATCTGGGGCAGGAAATTGACTTAAATAATCTTAGTCTCTCCTGTATCAAAATGATCTTTTAAGTTCTATTTGTTTAGGTGTAAATTGTGAAAGTCTTGTATTTTTGTTTTCAGCAGACTGTTTGTCAGATCAAATTATTTATTTGACGACTCTTTTTTTTTCCTGCCCTTCACAGCATGCGCTTCTTCCCACGTGTTGGACTGAGCAAAGGGCAGTTGTTTTTCATTTGTTGCTCTTCATTTCATGCTTCTGGGAATTCGATTTTCTTGCTGTTGGTGGTATGATTTTCTTGCTCTTCATTTCATGCTTCTGGTAAATATTTGATTAAGAAAACAGTCCATGGGTTCTCGAGTTAAAAATGGGATGATGCTCCAACACTATTAGGGATAAGCTAACCAAAAAGTTGTACCAGATGGGGAGCCACTGAATGTTGAACCTACTAAAAGAGTAACCTTTTCTGGCCATGGAAGACTTTGTCTTAGCTGAGTAATGGGGTAGATGAATGAACTGAGATCATATTCGAATGAGAGCGATTCTGAGAATAGAATAGCTCAGAAAGATTCAAAAGAATTGAGAGTTACTACCTATACTAATAAGGTGTACGACTAAGAAAGACTCTAAAGATTGAGAGTTCTTATCTATATTAACAAGGTGTACCTTTCATTTTGGTGGTTCAATCATTGAAAGTCTAAGATTAAGCATGTTTTGCTTAAAACAATTATATGCTGGGAGACCTCTGGCAAATTTTCCAAAGACACGGATTTTGAGCGGTTTTGGCTGCCACAACCATTTAGAAATTGTTAGATAAT

mRNA sequence

AATTTAGGTCAGTCGTGGATATTTTGCGTCTACTCCCATTAGTCACTCACTCGTCCATTGCGGCTAGGGTTTTTTGTTTTCCTCTATCTGACTCCTCTGTTTCTTGTTCTACAGATTCCTTGTTCTTTCATTGCTTAGATTCATGGAGCTCTTGTTAAGATAGGGTTTTCTGGTCGCCTTTCTACGAGTGGAATTTCCTGTTTTTGAGGTCTTTTTTGGGGTATTTGTTTTCGATATAGTTTGGAAATGGCGACCGTTAATCCATTTGATTTGTTGGGAGATGATGACGCCGAGGATCCGTCGCAGCTAATTGCGGCTAAGAAGGTGGCGGCAGTGACGTCGCCGGCGCCGAAGAAAGGTCCTGCCCAGAACAAACCGGCGGCTTTGGGGGCTCAGCAGAACAAGCCTGCTAGTCTTCCTTCAAAGCCTCTTCCTCCTGCACAGGCTGTAAGAGAAGCAAGGAATGAAGGCGGTCGTGGAGGTCGTGGCAGTGGGCGAGGTGTAGGGCGTGGTTATGGGCGAGGCCGTGAAGGCAGTGGCTTCGTTCGTGGTTCTTTCAATAATGAGAACATCAGTGCAGCTGAAGATGGAGAGACAGGAAAGACAACCGAAAGGCGTGGGTATGGTGGTCCACGTGGTCGTGGTGGCCGACGTGGTGGTTTCAATAATGGAGAGGCTGCTGATGGGGAGCGCCCTCGTAGAGTATTTGAGCGCCACAGTGGAACTGGCCATGGAAATGAATTTAAACGTGAAGGATCTGGTCGTGGTAATTGGGGAAGGCCAACTGAAGAATTTGCTGAGACTGTGGAGGAAGCTGTTAATGAAATGGAAAAGAACATGGGTGATGAGAAGCCTGTTCAAGAGGATAATGCTGAAGGAGTCAACACAGAGAACGCTGCTAAAGAACCGGAGGAAACAGAACCAGAAGACAAGGAAATGACTCTGGAGGAGTATGAAAAGTTGCTTGAAGAGAAAAGGAAGGCCCTTATGGCACTAAAAACTGAGGAAAGGAAGGTGGATCCAAAAGAATTTGCATCCATGCAACAACTTTCATGCAAGAAGGAGAACAACGACATATTTATTAAATTGGGATCTGAGAAGGATAAGCGAAAAGAGATTGCGGATAAAGAAGAGAGAACTAAGAAGTCTTTGAGCATCAATGAGTTCTTGAAGCCTGCGGAAGGTGAGAGACACTACGGCTCAGGTGGCCGGGGAAGGGGTCGTGGTGGCCGTGGTTCAAGGGGAGGATACAGTGGCAACTCGATCAGCAACGTTCCAGCCCCATCCATTGAGGACCCTGGGCAGTTCCCTACCTTAGGTGCGAATTTGGAAATGGCGACCGTTAATCCATTTGATTTGTTGGGAGACGATGATGCTGAGGACCCGTCGCAGCTAATTGCGGCTAAGAAGGTGGTGGCGGCGCCGCCTAAGAAAGGTCCTGTCCAGACCAAACCGGCGGCTTTGGGTGCTCAGCAGAACAAGGCTGCTAGTCTTCCTTCAAAGCCTCTACCTCCTGCACAGGCTGTAAGAGAAGCAAGGAATGAAAGCAGTCGTGGAGGTCGTGGCAGTGGACGAGGTGGAGGACGTGGTTATGGGCGAGGCCGTGAAGGCTCTGGCTTCAATCGTGGCTCTTTCAATAATGAGAGCAGCAGTGCAGCTGAAGATGGAGAGACGGGAAAGACAACTGAAAGGCGTGGATATGCTGGGCCTCGTGGCCGTGGTGGCCGTCGTGGTGGTTTCAATAATGGAGAGGCTACTGATGGGGAACGCCCTCGTAGAGTATTCGAGCGCCACAGTGGAACTGGCCATGGAAATGAATTTAAACGTGAAGGATCTGGTCGTGGTAATTGGGGAAGGCCAACTGAAGAATTTGCTGAGGCTGCTGAGGAAGCTGTTAATGAAACGGAAAAGAACATGGGTGATGAGAAGCCTGTTCAAGAGGATGATACCGGAGATGTCAACGCAGAGAACTCTGCTAAAGAACCAGAGGAAACAGAACCAGAAGACAAGGAAATGACTCTGGAGGAGTATGAAAAGTTGCTTGAGGAGAAAAGGAAGGCTCTTCTGACACTAAAAACTGAGGGAAGGAAGGTAGATCCTAAAGAATTTGCATCCATGCAACAACTTTCATGCAAGAAAGAGAACAACGACATATTTATTAAATTGGGATCTGAGAAGGATAAGCGAAAAGAAATTGCCGAGAAAGAGGATAGAACAAAGAAGTCTTTGAGCATTAACGAGTTCTTGAAGCCTGCGGAAGGGGAGCGACACTATGCCCCTGGTGGCCGGGGAAGGGGCCGTGGCCGAGGTTCAAGGGGAGGAGGAGGAGGATACAGTGGCAACTCGACAATCAATGTTGCAACCCCATCCATCGAGGACCCTGGGCAGTTCCCAACCTTAGGGGCTAAGTGAAACTTCTCAATAAAATTTGCCTTGAAACTGTGTTTTTGATCTGGGGCAGGAAATTGACTTAAATAATCTTAGTCTCTCCTGTATCAAAATGATCTTTTAAGTTCTATTTGTTTAGGTGTAAATTGTGAAAGTCTTGTATTTTTGTTTTCAGCAGACTGTTTGTCAGATCAAATTATTTATTTGACGACTCTTTTTTTTTCCTGCCCTTCACAGCATGCGCTTCTTCCCACGTGTTGGACTGAGCAAAGGGCAGTTGTTTTTCATTTGTTGCTCTTCATTTCATGCTTCTGGGAATTCGATTTTCTTGCTGTTGGTGGTATGATTTTCTTGCTCTTCATTTCATGCTTCTGGTAAATATTTGATTAAGAAAACAGTCCATGGGTTCTCGAGTTAAAAATGGGATGATGCTCCAACACTATTAGGGATAAGCTAACCAAAAAGTTGTACCAGATGGGGAGCCACTGAATGTTGAACCTACTAAAAGAGTAACCTTTTCTGGCCATGGAAGACTTTGTCTTAGCTGAGTAATGGGGTAGATGAATGAACTGAGATCATATTCGAATGAGAGCGATTCTGAGAATAGAATAGCTCAGAAAGATTCAAAAGAATTGAGAGTTACTACCTATACTAATAAGGTGTACGACTAAGAAAGACTCTAAAGATTGAGAGTTCTTATCTATATTAACAAGGTGTACCTTTCATTTTGGTGGTTCAATCATTGAAAGTCTAAGATTAAGCATGTTTTGCTTAAAACAAATTTTCCAAAGACACGGATTTTGAGCGGTTTTGGCTGCCACAACCATTTAGAAATTGTTAGATAAT

Coding sequence (CDS)

ATGGCGACCGTTAATCCATTTGATTTGTTGGGAGATGATGACGCCGAGGATCCGTCGCAGCTAATTGCGGCTAAGAAGGTGGCGGCAGTGACGTCGCCGGCGCCGAAGAAAGGTCCTGCCCAGAACAAACCGGCGGCTTTGGGGGCTCAGCAGAACAAGCCTGCTAGTCTTCCTTCAAAGCCTCTTCCTCCTGCACAGGCTGTAAGAGAAGCAAGGAATGAAGGCGGTCGTGGAGGTCGTGGCAGTGGGCGAGGTGTAGGGCGTGGTTATGGGCGAGGCCGTGAAGGCAGTGGCTTCGTTCGTGGTTCTTTCAATAATGAGAACATCAGTGCAGCTGAAGATGGAGAGACAGGAAAGACAACCGAAAGGCGTGGGTATGGTGGTCCACGTGGTCGTGGTGGCCGACGTGGTGGTTTCAATAATGGAGAGGCTGCTGATGGGGAGCGCCCTCGTAGAGTATTTGAGCGCCACAGTGGAACTGGCCATGGAAATGAATTTAAACGTGAAGGATCTGGTCGTGGTAATTGGGGAAGGCCAACTGAAGAATTTGCTGAGACTGTGGAGGAAGCTGTTAATGAAATGGAAAAGAACATGGGTGATGAGAAGCCTGTTCAAGAGGATAATGCTGAAGGAGTCAACACAGAGAACGCTGCTAAAGAACCGGAGGAAACAGAACCAGAAGACAAGGAAATGACTCTGGAGGAGTATGAAAAGTTGCTTGAAGAGAAAAGGAAGGCCCTTATGGCACTAAAAACTGAGGAAAGGAAGGTGGATCCAAAAGAATTTGCATCCATGCAACAACTTTCATGCAAGAAGGAGAACAACGACATATTTATTAAATTGGGATCTGAGAAGGATAAGCGAAAAGAGATTGCGGATAAAGAAGAGAGAACTAAGAAGTCTTTGAGCATCAATGAGTTCTTGAAGCCTGCGGAAGGTGAGAGACACTACGGCTCAGGTGGCCGGGGAAGGGGTCGTGGTGGCCGTGGTTCAAGGGGAGGATACAGTGGCAACTCGATCAGCAACGTTCCAGCCCCATCCATTGAGGACCCTGGGCAGTTCCCTACCTTAGGTGCGAATTTGGAAATGGCGACCGTTAATCCATTTGATTTGTTGGGAGACGATGATGCTGAGGACCCGTCGCAGCTAATTGCGGCTAAGAAGGTGGTGGCGGCGCCGCCTAAGAAAGGTCCTGTCCAGACCAAACCGGCGGCTTTGGGTGCTCAGCAGAACAAGGCTGCTAGTCTTCCTTCAAAGCCTCTACCTCCTGCACAGGCTGTAAGAGAAGCAAGGAATGAAAGCAGTCGTGGAGGTCGTGGCAGTGGACGAGGTGGAGGACGTGGTTATGGGCGAGGCCGTGAAGGCTCTGGCTTCAATCGTGGCTCTTTCAATAATGAGAGCAGCAGTGCAGCTGAAGATGGAGAGACGGGAAAGACAACTGAAAGGCGTGGATATGCTGGGCCTCGTGGCCGTGGTGGCCGTCGTGGTGGTTTCAATAATGGAGAGGCTACTGATGGGGAACGCCCTCGTAGAGTATTCGAGCGCCACAGTGGAACTGGCCATGGAAATGAATTTAAACGTGAAGGATCTGGTCGTGGTAATTGGGGAAGGCCAACTGAAGAATTTGCTGAGGCTGCTGAGGAAGCTGTTAATGAAACGGAAAAGAACATGGGTGATGAGAAGCCTGTTCAAGAGGATGATACCGGAGATGTCAACGCAGAGAACTCTGCTAAAGAACCAGAGGAAACAGAACCAGAAGACAAGGAAATGACTCTGGAGGAGTATGAAAAGTTGCTTGAGGAGAAAAGGAAGGCTCTTCTGACACTAAAAACTGAGGGAAGGAAGGTAGATCCTAAAGAATTTGCATCCATGCAACAACTTTCATGCAAGAAAGAGAACAACGACATATTTATTAAATTGGGATCTGAGAAGGATAAGCGAAAAGAAATTGCCGAGAAAGAGGATAGAACAAAGAAGTCTTTGAGCATTAACGAGTTCTTGAAGCCTGCGGAAGGGGAGCGACACTATGCCCCTGGTGGCCGGGGAAGGGGCCGTGGCCGAGGTTCAAGGGGAGGAGGAGGAGGATACAGTGGCAACTCGACAATCAATGTTGCAACCCCATCCATCGAGGACCCTGGGCAGTTCCCAACCTTAGGGGCTAAGTGA

Protein sequence

MATVNPFDLLGDDDAEDPSQLIAAKKVAAVTSPAPKKGPAQNKPAALGAQQNKPASLPSKPLPPAQAVREARNEGGRGGRGSGRGVGRGYGRGREGSGFVRGSFNNENISAAEDGETGKTTERRGYGGPRGRGGRRGGFNNGEAADGERPRRVFERHSGTGHGNEFKREGSGRGNWGRPTEEFAETVEEAVNEMEKNMGDEKPVQEDNAEGVNTENAAKEPEETEPEDKEMTLEEYEKLLEEKRKALMALKTEERKVDPKEFASMQQLSCKKENNDIFIKLGSEKDKRKEIADKEERTKKSLSINEFLKPAEGERHYGSGGRGRGRGGRGSRGGYSGNSISNVPAPSIEDPGQFPTLGANLEMATVNPFDLLGDDDAEDPSQLIAAKKVVAAPPKKGPVQTKPAALGAQQNKAASLPSKPLPPAQAVREARNESSRGGRGSGRGGGRGYGRGREGSGFNRGSFNNESSSAAEDGETGKTTERRGYAGPRGRGGRRGGFNNGEATDGERPRRVFERHSGTGHGNEFKREGSGRGNWGRPTEEFAEAAEEAVNETEKNMGDEKPVQEDDTGDVNAENSAKEPEETEPEDKEMTLEEYEKLLEEKRKALLTLKTEGRKVDPKEFASMQQLSCKKENNDIFIKLGSEKDKRKEIAEKEDRTKKSLSINEFLKPAEGERHYAPGGRGRGRGRGSRGGGGGYSGNSTINVATPSIEDPGQFPTLGAK

Homology

[Close]

BLAST of Carg04980 vs. NCBI nr
Match: KAG7025351.1 (RGG repeats nuclear RNA binding protein B [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 1327.8 bits (3435), Expect = 0.0e+00
Identity = 721/721 (100.00%), Postives = 721/721 (100.00%), Query Frame = 0


Query: 1   MATVNPFDLLGDDDAEDPSQLIAAKKVAAVTSPAPKKGPAQNKPAALGAQQNKPASLPSK 60
           MATVNPFDLLGDDDAEDPSQLIAAKKVAAVTSPAPKKGPAQNKPAALGAQQNKPASLPSK
Sbjct: 1   MATVNPFDLLGDDDAEDPSQLIAAKKVAAVTSPAPKKGPAQNKPAALGAQQNKPASLPSK 60

Query: 61  PLPPAQAVREARNEGGRGGRGSGRGVGRGYGRGREGSGFVRGSFNNENISAAEDGETGKT 120
           PLPPAQAVREARNEGGRGGRGSGRGVGRGYGRGREGSGFVRGSFNNENISAAEDGETGKT
Sbjct: 61  PLPPAQAVREARNEGGRGGRGSGRGVGRGYGRGREGSGFVRGSFNNENISAAEDGETGKT 120

Query: 121 TERRGYGGPRGRGGRRGGFNNGEAADGERPRRVFERHSGTGHGNEFKREGSGRGNWGRPT 180
           TERRGYGGPRGRGGRRGGFNNGEAADGERPRRVFERHSGTGHGNEFKREGSGRGNWGRPT
Sbjct: 121 TERRGYGGPRGRGGRRGGFNNGEAADGERPRRVFERHSGTGHGNEFKREGSGRGNWGRPT 180

Query: 181 EEFAETVEEAVNEMEKNMGDEKPVQEDNAEGVNTENAAKEPEETEPEDKEMTLEEYEKLL 240
           EEFAETVEEAVNEMEKNMGDEKPVQEDNAEGVNTENAAKEPEETEPEDKEMTLEEYEKLL
Sbjct: 181 EEFAETVEEAVNEMEKNMGDEKPVQEDNAEGVNTENAAKEPEETEPEDKEMTLEEYEKLL 240

Query: 241 EEKRKALMALKTEERKVDPKEFASMQQLSCKKENNDIFIKLGSEKDKRKEIADKEERTKK 300
           EEKRKALMALKTEERKVDPKEFASMQQLSCKKENNDIFIKLGSEKDKRKEIADKEERTKK
Sbjct: 241 EEKRKALMALKTEERKVDPKEFASMQQLSCKKENNDIFIKLGSEKDKRKEIADKEERTKK 300

Query: 301 SLSINEFLKPAEGERHYGSGGRGRGRGGRGSRGGYSGNSISNVPAPSIEDPGQFPTLGAN 360
           SLSINEFLKPAEGERHYGSGGRGRGRGGRGSRGGYSGNSISNVPAPSIEDPGQFPTLGAN
Sbjct: 301 SLSINEFLKPAEGERHYGSGGRGRGRGGRGSRGGYSGNSISNVPAPSIEDPGQFPTLGAN 360

Query: 361 LEMATVNPFDLLGDDDAEDPSQLIAAKKVVAAPPKKGPVQTKPAALGAQQNKAASLPSKP 420
           LEMATVNPFDLLGDDDAEDPSQLIAAKKVVAAPPKKGPVQTKPAALGAQQNKAASLPSKP
Sbjct: 361 LEMATVNPFDLLGDDDAEDPSQLIAAKKVVAAPPKKGPVQTKPAALGAQQNKAASLPSKP 420

Query: 421 LPPAQAVREARNESSRGGRGSGRGGGRGYGRGREGSGFNRGSFNNESSSAAEDGETGKTT 480
           LPPAQAVREARNESSRGGRGSGRGGGRGYGRGREGSGFNRGSFNNESSSAAEDGETGKTT
Sbjct: 421 LPPAQAVREARNESSRGGRGSGRGGGRGYGRGREGSGFNRGSFNNESSSAAEDGETGKTT 480

Query: 481 ERRGYAGPRGRGGRRGGFNNGEATDGERPRRVFERHSGTGHGNEFKREGSGRGNWGRPTE 540
           ERRGYAGPRGRGGRRGGFNNGEATDGERPRRVFERHSGTGHGNEFKREGSGRGNWGRPTE
Sbjct: 481 ERRGYAGPRGRGGRRGGFNNGEATDGERPRRVFERHSGTGHGNEFKREGSGRGNWGRPTE 540

Query: 541 EFAEAAEEAVNETEKNMGDEKPVQEDDTGDVNAENSAKEPEETEPEDKEMTLEEYEKLLE 600
           EFAEAAEEAVNETEKNMGDEKPVQEDDTGDVNAENSAKEPEETEPEDKEMTLEEYEKLLE
Sbjct: 541 EFAEAAEEAVNETEKNMGDEKPVQEDDTGDVNAENSAKEPEETEPEDKEMTLEEYEKLLE 600

Query: 601 EKRKALLTLKTEGRKVDPKEFASMQQLSCKKENNDIFIKLGSEKDKRKEIAEKEDRTKKS 660
           EKRKALLTLKTEGRKVDPKEFASMQQLSCKKENNDIFIKLGSEKDKRKEIAEKEDRTKKS
Sbjct: 601 EKRKALLTLKTEGRKVDPKEFASMQQLSCKKENNDIFIKLGSEKDKRKEIAEKEDRTKKS 660

Query: 661 LSINEFLKPAEGERHYAPGGRGRGRGRGSRGGGGGYSGNSTINVATPSIEDPGQFPTLGA 720
           LSINEFLKPAEGERHYAPGGRGRGRGRGSRGGGGGYSGNSTINVATPSIEDPGQFPTLGA
Sbjct: 661 LSINEFLKPAEGERHYAPGGRGRGRGRGSRGGGGGYSGNSTINVATPSIEDPGQFPTLGA 720

Query: 721 K 722
           K
Sbjct: 721 K 721

[Close]

BLAST of Carg04980 vs. NCBI nr
Match: KAG7011066.1 (RGG repeats nuclear RNA binding protein B [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 1000.3 bits (2585), Expect = 8.2e-288
Identity = 592/776 (76.29%), Postives = 631/776 (81.31%), Query Frame = 0


Query: 1   MATVNPFDLLGDDDAEDPSQLIAAKKVAAVTSPAPKKGPAQNKPAALGAQQNKPASLPSK 60
           MATVNPFDLLGDDDAEDPSQLIAAK+VAAVT+P PKKG AQ KP    +QQNKPASLPSK
Sbjct: 1   MATVNPFDLLGDDDAEDPSQLIAAKQVAAVTAPPPKKGSAQTKPVVSPSQQNKPASLPSK 60

Query: 61  PLPPAQAVREARNEGGRGGRGSGRGVGRGYGRGREGSGFVRGSFNNENISAAEDGETGKT 120
           PLPP+QAVREARNEG RGGRGSGRG GRGYGRGREG GF R   N+EN SA EDGE GKT
Sbjct: 61  PLPPSQAVREARNEGSRGGRGSGRGGGRGYGRGREGGGFNRDFANSENTSAPEDGEAGKT 120

Query: 121 TERRGYGGPRGRGGRRGGFNNGEAADGERPRRVFERHSGTGHGNEFKREGSGRGNWGRPT 180
           TERRGYGGPRGRGGRRGGFNNGEA DGERPRRVFERHSGTG GNE+KREG+GRGNWGRP 
Sbjct: 121 TERRGYGGPRGRGGRRGGFNNGEAGDGERPRRVFERHSGTGRGNEYKREGAGRGNWGRPA 180

Query: 181 EEFAETVEEAVNEMEKNMGDEKPVQEDNAEGVNTENAAKEPEETEPEDKEMTLEEYEKLL 240
           +EFAE  EEAVNE EKN+GDEKPVQE++  GVN EN AKEPEETEPEDKEMTLEEYEKLL
Sbjct: 181 DEFAEVAEEAVNEPEKNVGDEKPVQEEDTSGVNRENPAKEPEETEPEDKEMTLEEYEKLL 240

Query: 241 EEKRKALMALKTEERKVDPKEFASMQQLSCKKENNDIFIKLGSEKDKRKEIADKEERTKK 300
           E+KRKALMALKTEERKVDPKEFASMQQLS KKENNDIFIKLGSEKDKRKEIADKEERTKK
Sbjct: 241 EDKRKALMALKTEERKVDPKEFASMQQLSSKKENNDIFIKLGSEKDKRKEIADKEERTKK 300

Query: 301 SLSINEFLKPAEGERHYGSGGRGRGRGGRGSRGGYSGNSISNVPAPSIEDPGQFPTLGA- 360
           SLSINEFL+PAEGERHY  GGRGRGR GRGSRGGY G+SISNV APSIEDPGQFPTLGA 
Sbjct: 301 SLSINEFLRPAEGERHYTPGGRGRGR-GRGSRGGYGGSSISNVAAPSIEDPGQFPTLGAK 360

Query: 361 ------------------------------------------------NLEMATVNPFDL 420
                                                           + EMAT NPFDL
Sbjct: 361 KLTRITVVSPIPFVSRSEIHGVLVKLGFRGRLSRSAIPFQLFRYWFQHSSEMATTNPFDL 420

Query: 421 LGDDDAEDPSQLIAAKKVVAAPPKKGP--VQTKPAALGAQQNKAASLPSKPLPPAQAVRE 480
           LGDDDAEDPSQLIAAK   A   +KG    Q K AA  A+QNK A+LPSKPLPPAQAVRE
Sbjct: 421 LGDDDAEDPSQLIAAKHAAAVLSRKGSDHPQGKQAAAAAKQNKPANLPSKPLPPAQAVRE 480

Query: 481 ARNESSRGGRGSGR-GGGRGYGRGREGSGFNRG-SFNNES-SSAAEDGETGKTTERR-GY 540
           A+NE  RGGRGSGR GGG GYGRGR   GFNR   +N+ S SS  EDGETG+TTE+R GY
Sbjct: 481 AKNEGGRGGRGSGRGGGGYGYGRGRGSGGFNREFPYNDYSFSSNPEDGETGRTTEKRGGY 540

Query: 541 AGPRGRGGRRGGFNNGEATDGERPRRVFERHSGTGHGNEFKREGSGRGNWGRPTEEFAEA 600
            GPRGRGGRRGGFNNGEA+DGER R  FER SGTG+GN+FKREGSGRGNWGRPT+EF+E 
Sbjct: 541 GGPRGRGGRRGGFNNGEASDGERFRGAFERQSGTGYGNDFKREGSGRGNWGRPTDEFSEG 600

Query: 601 AEEAVNETEKNMGDEKPVQEDDTGDVNAENSAKEPEETEPEDKEMTLEEYEKLLEEKRKA 660
           AEE VNET+K +GDEKPV EDD      ENSA++ EE EPEDKEMTLEEYEKL EEKRKA
Sbjct: 601 AEE-VNETQKKVGDEKPVHEDD------ENSARQLEEKEPEDKEMTLEEYEKLKEEKRKA 660

Query: 661 LLTLKTEGRKVDPKEFASMQQLSCKKENNDIFIKLGSEKDKRKEIAEKEDRTKKSLSINE 720
           LL LKTE RKVDPKEFASMQQLS KK+N D+FIKLGS+KDKRKEIA+KE+RTKKSLSINE
Sbjct: 661 LLALKTEERKVDPKEFASMQQLSSKKDNQDVFIKLGSDKDKRKEIADKEERTKKSLSINE 720

Query: 721 FLKPAEGERHYAPGGRGRGRGRGSRGGGGGYSGNSTINVATPSIEDPGQFPTLGAK 722
           FLKPAEGERHY PGGRGRGRGRGSRGG  G S +S +  A PSIEDPGQFPTLGAK
Sbjct: 721 FLKPAEGERHYMPGGRGRGRGRGSRGGYVGSSMSSNV-AAAPSIEDPGQFPTLGAK 767

[Close]

BLAST of Carg04980 vs. NCBI nr
Match: KAG6575278.1 (RGG repeats nuclear RNA binding protein B, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 995.7 bits (2573), Expect = 2.0e-286
Identity = 587/756 (77.65%), Postives = 627/756 (82.94%), Query Frame = 0


Query: 1   MATVNPFDLLGDDDAEDPSQLIAAKKVAAVTSPAPKKGPAQNKPAALGAQQNKPASLPSK 60
           MATVNPFDLLGDDDAEDPSQLIAAK+VAAVT+P PKKG AQ KP    +QQNKPASLPSK
Sbjct: 1   MATVNPFDLLGDDDAEDPSQLIAAKQVAAVTAPPPKKGSAQTKPVVSPSQQNKPASLPSK 60

Query: 61  PLPPAQAVREARNEGGRGGRGSGRGVGRGYGRGREGSGFVRGSFNNENISAAEDGETGKT 120
           PLPP+QAVREARNEG RGGRGSGRG GRGYGRGREG GF R   N+EN SA EDGE GKT
Sbjct: 61  PLPPSQAVREARNEGSRGGRGSGRGGGRGYGRGREGGGFNRDFANSENTSAPEDGEAGKT 120

Query: 121 TERRGYGGPRGRGGRRGGFNNGEAADGERPRRVFERHSGTGHGNEFKREGSGRGNWGRPT 180
           TERRGYGGPRGRGGRRGGFNNGEA DGERPRRVFERHSGTG GNE+KREG+GRGNWGRP 
Sbjct: 121 TERRGYGGPRGRGGRRGGFNNGEAGDGERPRRVFERHSGTGRGNEYKREGAGRGNWGRPA 180

Query: 181 EEFAETVEEAVNEMEKNMGDEKPVQEDNAEGVNTENAAKEPEETEPEDKEMTLEEYEKLL 240
           +EFAE  EEAVNE EKN+GDEKPVQE++  GVN EN AKEPEETEPEDKEMTLEEYEKLL
Sbjct: 181 DEFAEVAEEAVNEPEKNVGDEKPVQEEDTSGVNRENPAKEPEETEPEDKEMTLEEYEKLL 240

Query: 241 EEKRKALMALKTEERKVDPKEFASMQQLSCKKENNDIFIKLGSEKDKRKEIADKEERTKK 300
           E+KRKALMALKTEERKVDPKEFASMQQLS KKENNDIFIKLGSEKDKRKEIADKEERTKK
Sbjct: 241 EDKRKALMALKTEERKVDPKEFASMQQLSSKKENNDIFIKLGSEKDKRKEIADKEERTKK 300

Query: 301 SLSINEFLKPAEGERHYGSGGRGRGRGGRGSRGGYSGNSISNVPAPSIEDPGQFPTLGA- 360
           SLSINEFL+PAEGERHY  GGRGRGR GRGSRGGY G+SISNV APSIEDPGQFPTL   
Sbjct: 301 SLSINEFLRPAEGERHYTPGGRGRGR-GRGSRGGYGGSSISNVAAPSIEDPGQFPTLEIH 360

Query: 361 ----------------------------NLEMATVNPFDLLGDDDAEDPSQLIAAKKVVA 420
                                       + EMAT NPFDLLGDDDAEDPSQLIAAK   A
Sbjct: 361 GVLVKLGFRGRLSRSAIPFQLFRYWFQHSSEMATTNPFDLLGDDDAEDPSQLIAAKHAAA 420

Query: 421 APPKKGP--VQTKPAALGAQQNKAASLPSKPLPPAQAVREARNESSRGGRGSGR-GGGRG 480
              +KG    Q K AA  A+QNK A+LPSKPLPPAQAVREA+NE  RGGRGSGR GGG G
Sbjct: 421 VLSRKGSDHPQGKQAAAAAKQNKPANLPSKPLPPAQAVREAKNEGGRGGRGSGRGGGGYG 480

Query: 481 YGRGREGSGFNRG-SFNNES-SSAAEDGETGKTTERR-GYAGPRGRGGRRGGFNNGEATD 540
           YGRGR   GFNR   +N+ S SS  EDGETG+TTE+R GY GPRGRGGRRGGFNNGEA+D
Sbjct: 481 YGRGRGSGGFNREFPYNDYSFSSNPEDGETGRTTEKRGGYGGPRGRGGRRGGFNNGEASD 540

Query: 541 GERPRRVFERHSGTGHGNEFKREGSGRGNWGRPTEEFAEAAEEAVNETEKNMGDEKPVQE 600
           GER R  FER SGTG+GN+FKREG GRGNWGRPT+EF+E AEE VNET+K +GDEKPV E
Sbjct: 541 GERFRGAFERQSGTGYGNDFKREGFGRGNWGRPTDEFSEGAEE-VNETQKKVGDEKPVHE 600

Query: 601 DDTGDVNAENSAKEPEETEPEDKEMTLEEYEKLLEEKRKALLTLKTEGRKVDPKEFASMQ 660
           DD      ENSA++ EE EPEDKEMTLEEYEKL EEKRKALL LKTE RKVDPKEFASMQ
Sbjct: 601 DD------ENSARQLEEKEPEDKEMTLEEYEKLKEEKRKALLALKTEERKVDPKEFASMQ 660

Query: 661 QLSCKKENNDIFIKLGSEKDKRKEIAEKEDRTKKSLSINEFLKPAEGERHYAPGGRGRGR 719
           QLS KK+N D+FIKLGS+KDKRKEIA+KE+RTKKSLSINEFLKPAEGERHY PGGRGRGR
Sbjct: 661 QLSSKKDNQDVFIKLGSDKDKRKEIADKEERTKKSLSINEFLKPAEGERHYMPGGRGRGR 720

[Close]

BLAST of Carg04980 vs. NCBI nr
Match: KAG6592943.1 (RGG repeats nuclear RNA binding protein B, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 658.7 bits (1698), Expect = 5.9e-185
Identity = 357/359 (99.44%), Postives = 357/359 (99.44%), Query Frame = 0


Query: 363 MATVNPFDLLGDDDAEDPSQLIAAKKVVAAPPKKGPVQTKPAALGAQQNKAASLPSKPLP 422
           MATVNPFDLLGDDDAEDPSQLIAAKKVVAAPPKKGP QTKPAALGAQQNKAASLPSKPLP
Sbjct: 1   MATVNPFDLLGDDDAEDPSQLIAAKKVVAAPPKKGPAQTKPAALGAQQNKAASLPSKPLP 60

Query: 423 PAQAVREARNESSRGGRGSGRGGGRGYGRGREGSGFNRGSFNNESSSAAEDGETGKTTER 482
           PAQAVREARNESSRGGRGSGRGGGRGYGRGREGSGFNRGSFNNESSSAAEDGETGKTTER
Sbjct: 61  PAQAVREARNESSRGGRGSGRGGGRGYGRGREGSGFNRGSFNNESSSAAEDGETGKTTER 120

Query: 483 RGYAGPRGRGGRRGGFNNGEATDGERPRRVFERHSGTGHGNEFKREGSGRGNWGRPTEEF 542
           RGYAGPRGRGGRRGGFNNGEA DGERPRRVFERHSGTGHGNEFKREGSGRGNWGRPTEEF
Sbjct: 121 RGYAGPRGRGGRRGGFNNGEAADGERPRRVFERHSGTGHGNEFKREGSGRGNWGRPTEEF 180

Query: 543 AEAAEEAVNETEKNMGDEKPVQEDDTGDVNAENSAKEPEETEPEDKEMTLEEYEKLLEEK 602
           AEAAEEAVNETEKNMGDEKPVQEDDTGDVNAENSAKEPEETEPEDKEMTLEEYEKLLEEK
Sbjct: 181 AEAAEEAVNETEKNMGDEKPVQEDDTGDVNAENSAKEPEETEPEDKEMTLEEYEKLLEEK 240

Query: 603 RKALLTLKTEGRKVDPKEFASMQQLSCKKENNDIFIKLGSEKDKRKEIAEKEDRTKKSLS 662
           RKALLTLKTEGRKVDPKEFASMQQLSCKKENNDIFIKLGSEKDKRKEIAEKEDRTKKSLS
Sbjct: 241 RKALLTLKTEGRKVDPKEFASMQQLSCKKENNDIFIKLGSEKDKRKEIAEKEDRTKKSLS 300

Query: 663 INEFLKPAEGERHYAPGGRGRGRGRGSRGGGGGYSGNSTINVATPSIEDPGQFPTLGAK 722
           INEFLKPAEGERHYAPGGRGRGRGRGSRGGGGGYSGNSTINVATPSIEDPGQFPTLGAK
Sbjct: 301 INEFLKPAEGERHYAPGGRGRGRGRGSRGGGGGYSGNSTINVATPSIEDPGQFPTLGAK 359

[Close]

BLAST of Carg04980 vs. NCBI nr
Match: KAG6592944.1 (RGG repeats nuclear RNA binding protein B, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 653.3 bits (1684), Expect = 2.5e-183
Identity = 355/359 (98.89%), Postives = 356/359 (99.16%), Query Frame = 0


Query: 1   MATVNPFDLLGDDDAEDPSQLIAAKKVAAVTSPAPKKGPAQNKPAALGAQQNKPASLPSK 60
           MATVNPFDLLGDDDAEDPSQLIAAKKVAAVTSPAPKKGPAQNKPAALGAQQNKPASLPSK
Sbjct: 1   MATVNPFDLLGDDDAEDPSQLIAAKKVAAVTSPAPKKGPAQNKPAALGAQQNKPASLPSK 60

Query: 61  PLPPAQAVREARNEGGRGGRGSGRGVGRGYGRGREGSGFVRGSFNNENISAAEDGETGKT 120
           PLPPAQAVREARNE   GGRGSGRGVGRGYGRGREGSGFVRGSFNNENISAAEDGETGKT
Sbjct: 61  PLPPAQAVREARNE---GGRGSGRGVGRGYGRGREGSGFVRGSFNNENISAAEDGETGKT 120

Query: 121 TERRGYGGPRGRGGRRGGFNNGEAADGERPRRVFERHSGTGHGNEFKREGSGRGNWGRPT 180
           TERRGYGGPRGRGGRRGGFNNGEAADGERPRRVFERHSGTGHGNEFKREGSGRGNWGRPT
Sbjct: 121 TERRGYGGPRGRGGRRGGFNNGEAADGERPRRVFERHSGTGHGNEFKREGSGRGNWGRPT 180

Query: 181 EEFAETVEEAVNEMEKNMGDEKPVQEDNAEGVNTENAAKEPEETEPEDKEMTLEEYEKLL 240
           EEFAETVEEAVNEMEKNMGDEKPVQEDNAEGVNTENAAKEPEETEPEDKEMTLEEYEKLL
Sbjct: 181 EEFAETVEEAVNEMEKNMGDEKPVQEDNAEGVNTENAAKEPEETEPEDKEMTLEEYEKLL 240

Query: 241 EEKRKALMALKTEERKVDPKEFASMQQLSCKKENNDIFIKLGSEKDKRKEIADKEERTKK 300
           EEKRKAL+ALKTEERKVDPKEFASMQQLSCKKENNDIFIKLGSEKDKRKEIADKEERTKK
Sbjct: 241 EEKRKALLALKTEERKVDPKEFASMQQLSCKKENNDIFIKLGSEKDKRKEIADKEERTKK 300

Query: 301 SLSINEFLKPAEGERHYGSGGRGRGRGGRGSRGGYSGNSISNVPAPSIEDPGQFPTLGA 360
           SLSINEFLKPAEGERHYGSGGRGRGRGGRGSRGGYSGNSISNVPAPSIEDPGQFPTLGA
Sbjct: 301 SLSINEFLKPAEGERHYGSGGRGRGRGGRGSRGGYSGNSISNVPAPSIEDPGQFPTLGA 356

[Close]

BLAST of Carg04980 vs. ExPASy Swiss-Prot
Match: O23523 (RGG repeats nuclear RNA binding protein A OS=Arabidopsis thaliana OX=3702 GN=RGGA PE=1 SV=1)

HSP 1 Score: 288.9 bits (738), Expect = 1.6e-76
Identity = 213/377 (56.50%), Postives = 252/377 (66.84%), Query Frame = 0


Query: 363 MATVNPFDLLGDDDAEDPSQLIAAKKVVAAPPKKGPVQTKPAALGAQQNKAASLPSKPLP 422
           MAT+NPFDLL DDDAEDPSQL  A + +    K G V + PA        A  LPSKPLP
Sbjct: 1   MATLNPFDLL-DDDAEDPSQLAVAIEKIDKSKKSGQVSSLPA------KSAPKLPSKPLP 60

Query: 423 PAQAVREARNESSRGGRGSGRGGGRGYGRGREGSGFNRGSFNNESSSA----AEDGETGK 482
           PAQAVREAR+++ RGG G G     G+ RGR   G+NR   NN  S      + +G+  K
Sbjct: 61  PAQAVREARSDAPRGGGGRG-----GFNRGR--GGYNRDDGNNGYSGGYTKPSGEGDVSK 120

Query: 483 TT-ERRGYAG-PRGR---------GGRRGGFNNGEATDGERPRRVFERHSGTGHGNEFKR 542
           ++ ERRG  G PRG          GGRRGGF+N E  DGERPRR FER SGTG G++FKR
Sbjct: 121 SSYERRGGGGAPRGSFRGEGGGPGGGRRGGFSN-EGGDGERPRRAFERRSGTGRGSDFKR 180

Query: 543 EGSGRGNWGRPTEEFAEAAEEAVN-ETEKNMGDEKPVQEDDTGDVNAENSAKEPEETEPE 602
           +GSGRGNWG P EE A   E     ETEK++G EKP  +D   D N E++    EE EPE
Sbjct: 181 DGSGRGNWGTPGEEIAAETEAVAGVETEKDVG-EKPAVDDVAADANKEDTV--VEEKEPE 240

Query: 603 DKEMTLEEYEKLLEEKRKALLTLKTEGRKVDPKEFASMQQLSCKKENNDIFIKLGSEKDK 662
           DKEMTL+EYEK+LEEK+KAL +L T  RKVD K F SMQQLS KK N++IFIKLGS+KDK
Sbjct: 241 DKEMTLDEYEKILEEKKKALQSLTTSERKVDTKVFESMQQLSNKKSNDEIFIKLGSDKDK 300

Query: 663 RKEIAEKEDRTKKSLSINEFLKPAEGERHYAPGGRGRGRGRGSRGGGGGYSGNS--TINV 722
           RK+  +KE++ KK++SINEFLKPAEG  +Y  GGRG GRGRG RG GG  SG S    N 
Sbjct: 301 RKD--DKEEKAKKAVSINEFLKPAEGGNYYR-GGRG-GRGRGGRGRGGVSSGESGGYRNE 355

[Close]

BLAST of Carg04980 vs. ExPASy Swiss-Prot
Match: Q9SQ56 (RGG repeats nuclear RNA binding protein A (Fragment) OS=Nicotiana tabacum OX=4097 GN=RggA PE=2 SV=1)

HSP 1 Score: 261.9 bits (668), Expect = 2.1e-68
Identity = 180/303 (59.41%), Postives = 216/303 (71.29%), Query Frame = 0


Query: 437 GGRGSGRGGGRGYGRGREGSGFNRGSFNNESSSAA-----------EDGETGKTTERR-G 496
           GGRG  RGGGRG G GR G GFN+ S ++E++  +           EDGE+GK +ERR G
Sbjct: 3   GGRGGPRGGGRGRGPGR-GRGFNQESADDENAFGSNNGFSGRYRVQEDGESGKLSERRGG 62

Query: 497 YAGPRG--RGGRRGGFNNGEAT--DGERPRRVFERHSGTGHGNEF-KREGSGRGNWGRPT 556
           Y GPRG   GGRRGGFNNG+A   +GERPRRVF+R SGTG GNE+ KREGSGRGNWG P 
Sbjct: 63  YGGPRGGFHGGRRGGFNNGDAAEGEGERPRRVFDRRSGTGRGNEYIKREGSGRGNWGTPA 122

Query: 557 EEFAEAAEEAVNETEKNMGDEKPVQEDDTGDVNAENSAKEPEETEPEDKEMTLEEYEKLL 616
           ++ A+  E  VN+ EK +  EK   +++  D N +++A EPEE EPE+KEMTLEEYEKL+
Sbjct: 123 DDIAQETEVPVNDGEKIVEAEKEAGQEEAEDTNKDSTAAEPEEKEPEEKEMTLEEYEKLM 182

Query: 617 EEKRKALLTLKTEGRKVD-PKEFASMQQLSCKKENNDIFIKLGSEKDKRKEIAEKEDRTK 676
           EEKRKALL LK E RKV+  KE  SMQ LS KK +++IFIKLGSEK+KRKE  EK    +
Sbjct: 183 EEKRKALLALKPEERKVNLDKELESMQLLSNKKNDDEIFIKLGSEKEKRKEAVEK---AR 242

Query: 677 KSLSINEFLKPAEGERHYAPGGRGRGRGRGSRGGGGGYSGNSTINVATPSIEDPGQFPTL 722
           K+ SINEFLKPAEGE +   GGRGRG GRG  G GGG  GN +   + PSIED GQFP+L
Sbjct: 243 KTQSINEFLKPAEGENYSRRGGRGRGPGRGRGGFGGGVGGNKSF--SAPSIEDVGQFPSL 299

[Close]

BLAST of Carg04980 vs. ExPASy Swiss-Prot
Match: O23593 (RGG repeats nuclear RNA binding protein B OS=Arabidopsis thaliana OX=3702 GN=RGGB PE=1 SV=1)

HSP 1 Score: 245.0 bits (624), Expect = 2.6e-63
Identity = 197/385 (51.17%), Postives = 245/385 (63.64%), Query Frame = 0


Query: 363 MATVNPFDLLGDDDAEDPSQLIAAK--KVVAAPPKKGPVQTKPAALGAQQNKAASLPSKP 422
           MA+VNPFDLL DDDAEDPSQ++A+K  KVVA      PVQT          K+  +P+KP
Sbjct: 1   MASVNPFDLL-DDDAEDPSQIVASKPLKVVA------PVQTA---------KSGKMPTKP 60

Query: 423 LPPAQAVREARNESSRGGRGSGRGGGRGYGRGREGSGFNRGSFNNESSSAAEDGETG--- 482
            PP+QAVREARN +  GGRG+GRGG   YGRG  G G NR S NN+   A E+G  G   
Sbjct: 61  PPPSQAVREARN-APGGGRGAGRGG--SYGRGGRG-GNNRDSRNND-GPANENGYGGGYR 120

Query: 483 KTTE----RRGYAGPRG--RGGRRGGFNN-GEATDGERPRRVFERHSGTGHGNEFKREGS 542
           ++ E    RRG  GP G  RG RRG ++N G++ D ERPR+ ++RHS T +GNE KR+G+
Sbjct: 121 RSEEGDGARRG--GPVGGYRGDRRGSYSNGGDSGDSERPRKNYDRHSRTAYGNEDKRDGA 180

Query: 543 GRGNWGRPTEEFAEAAEEAVNETEKNMGDEKPVQEDDTGDVNAENSAKEPEETEPEDKEM 602
           GR NWG   ++     EE+    +KN+  EK   E +  D   E  A++ EE +PEDKEM
Sbjct: 181 GRANWGTTQDDITPVTEESTAVVDKNLTVEKQDGEGEATDAKNETPAEKAEE-KPEDKEM 240

Query: 603 TLEEYEKLLEEKRKALLTLKTEGRKVDPKEFASMQQLSCKKENND-IFIKLGSEKDKRKE 662
           TLEEYEK+LEEK+KAL   K E RKVD K F +MQQLS KK NND +FIKLG+EKDKR  
Sbjct: 241 TLEEYEKVLEEKKKALQATKVEERKVDTKAFEAMQQLSSKKSNNDEVFIKLGTEKDKR-- 300

Query: 663 IAEKEDRTKKSLSINEFLKPAEGERHYAPGG--RGRGRGRGSR-------------GGGG 720
           I E+E++T+KSLSINEFLKPA+G+ +Y P G  +G   GRG R             GG  
Sbjct: 301 ITEREEKTRKSLSINEFLKPADGKSYYRPRGGYQGGREGRGPREGNQRDGGRNLREGGRN 359

[Close]

BLAST of Carg04980 vs. ExPASy Swiss-Prot
Match: Q9LVT8 (RGG repeats nuclear RNA binding protein C OS=Arabidopsis thaliana OX=3702 GN=RGGC PE=1 SV=1)

HSP 1 Score: 237.3 bits (604), Expect = 5.5e-61
Identity = 190/378 (50.26%), Postives = 227/378 (60.05%), Query Frame = 0


Query: 1   MATVNPFDLLGDDDAEDPSQLIAAKKVAAVTSPAPKKGPAQNKPAALGAQQNKPASLPSK 60
           MA++NPFDLLG DDAEDPSQL  A                + + AA   Q  K A  P+K
Sbjct: 1   MASLNPFDLLG-DDAEDPSQLAVALS-------------QKVEKAAAAVQPPKAAKFPTK 60

Query: 61  PLPPAQAVREARN--EGGRGGRGSGRGVGRGYGRGREGSGFVRGSFNNE---NISAAEDG 120
           P PP+QAVRE+RN  +GGRGG G GRG   G+ RGR   G+ R + NN+   N +    G
Sbjct: 61  PAPPSQAVRESRNAPQGGRGGTG-GRG---GFSRGRGNGGYNRDNRNNDAPGNENGFSGG 120

Query: 121 -----ETGKTTERRG-YGGPRGRGG----RRGGFNNGEAADGERPRRVFERHSGTGHGNE 180
                E      R G  GG R  GG    RRGG  NGE+ D ERP R ++RHS TGHG  
Sbjct: 121 YRRPSEDADGASRGGSVGGYRVGGGREGPRRGGVANGESGDVERPPRNYDRHSRTGHGTG 180

Query: 181 FKREGSGRGNWGRPTEEFAETVEEAVNEMEKNMGDEKPVQEDNAEGVNTENAAKEPEETE 240
            KR G GRGNWG   ++   T EE   E+EK+   EK   ED       E  A+E  + E
Sbjct: 181 MKRNGGGRGNWGTTEDDIPPTSEEPTTEVEKSPVAEKQGGEDETPEAKKELTAEEKAQKE 240

Query: 241 PED---KEMTLEEYEKLLEEKRKALMALKTEERKVDPKEFASMQQLSCKKE-NNDIFIKL 300
            E+   +EMTLEEYEK+LEEK+KAL A K EERKVD K F SMQQLS KK  + +IFIKL
Sbjct: 241 AEEAEAREMTLEEYEKILEEKKKALQATKVEERKVDTKVFESMQQLSNKKNTDEEIFIKL 300

Query: 301 GSEKDKRKEIADKEERTKKSLSINEFLKPAEGERHYGSGGRGRGRGGRGSRG-GYSGNSI 359
           GS+K+KRK   D  E+ KKSLSINEFLKPA+G+R+ G GG  RGRGGRG RG G +    
Sbjct: 301 GSDKEKRK---DATEKAKKSLSINEFLKPADGKRYNGRGGGSRGRGGRGGRGEGGNQRYA 357

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BLAST of Carg04980 vs. ExPASy TrEMBL
Match: A0A6J1H755 (RGG repeats nuclear RNA binding protein A-like OS=Cucurbita moschata OX=3662 GN=LOC111460713 PE=4 SV=1)

HSP 1 Score: 652.5 bits (1682), Expect = 2.0e-183
Identity = 352/359 (98.05%), Postives = 355/359 (98.89%), Query Frame = 0


Query: 1   MATVNPFDLLGDDDAEDPSQLIAAKKVAAVTSPAPKKGPAQNKPAALGAQQNKPASLPSK 60
           MATVNPFDLLGDDDAEDPSQLIAAKKVAAVTSPAPKKGPAQNKPAALGAQQNKPASLPSK
Sbjct: 1   MATVNPFDLLGDDDAEDPSQLIAAKKVAAVTSPAPKKGPAQNKPAALGAQQNKPASLPSK 60

Query: 61  PLPPAQAVREARNEGGRGGRGSGRGVGRGYGRGREGSGFVRGSFNNENISAAEDGETGKT 120
           PLPPAQAVREARNEGGRGGRGSGRGVGRGYGRGREGSGFVRGSFNNENISAAEDGETGKT
Sbjct: 61  PLPPAQAVREARNEGGRGGRGSGRGVGRGYGRGREGSGFVRGSFNNENISAAEDGETGKT 120

Query: 121 TERRGYGGPRGRGGRRGGFNNGEAADGERPRRVFERHSGTGHGNEFKREGSGRGNWGRPT 180
           TERRGYGGPRGRGGRRGGFNNGEAADGERPRRVFERHSGTGHGNEFKREGSGRGNWGRPT
Sbjct: 121 TERRGYGGPRGRGGRRGGFNNGEAADGERPRRVFERHSGTGHGNEFKREGSGRGNWGRPT 180

Query: 181 EEFAETVEEAVNEMEKNMGDEKPVQEDNAEGVNTENAAKEPEETEPEDKEMTLEEYEKLL 240
           EEFAE  EEAVNEMEKNMGDEKPVQED+A GVN EN+AKEPEETEPEDKEMTLEEYEKLL
Sbjct: 181 EEFAEAAEEAVNEMEKNMGDEKPVQEDDAGGVNAENSAKEPEETEPEDKEMTLEEYEKLL 240

Query: 241 EEKRKALMALKTEERKVDPKEFASMQQLSCKKENNDIFIKLGSEKDKRKEIADKEERTKK 300
           EEKRKAL+ALKTEERKVDPKEFASMQQLSCKKENNDIFIKLGSEKDKRKEIADKEERTKK
Sbjct: 241 EEKRKALLALKTEERKVDPKEFASMQQLSCKKENNDIFIKLGSEKDKRKEIADKEERTKK 300

Query: 301 SLSINEFLKPAEGERHYGSGGRGRGRGGRGSRGGYSGNSISNVPAPSIEDPGQFPTLGA 360
           SLSINEFLKPAEGERHYGSGGRGRGRGGRGSRGGYSGNSISNVPAPSIEDPGQFPTLGA
Sbjct: 301 SLSINEFLKPAEGERHYGSGGRGRGRGGRGSRGGYSGNSISNVPAPSIEDPGQFPTLGA 359

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BLAST of Carg04980 vs. ExPASy TrEMBL
Match: A0A6J1KVE4 (RGG repeats nuclear RNA binding protein A-like OS=Cucurbita maxima OX=3661 GN=LOC111497566 PE=4 SV=1)

HSP 1 Score: 646.0 bits (1665), Expect = 1.9e-181
Identity = 350/359 (97.49%), Postives = 355/359 (98.89%), Query Frame = 0


Query: 1   MATVNPFDLLGDDDAEDPSQLIAAKKVAAVTSPAPKKGPAQNKPAALGAQQNKPASLPSK 60
           MATVNPFDLLGDDDAEDPSQLIAAKKVAA+TSPAPKKGPAQNKPAALGAQQNKPA+LPSK
Sbjct: 1   MATVNPFDLLGDDDAEDPSQLIAAKKVAAMTSPAPKKGPAQNKPAALGAQQNKPANLPSK 60

Query: 61  PLPPAQAVREARNEGGRGGRGSGRGVGRGYGRGREGSGFVRGSFNNENISAAEDGETGKT 120
           PLPPAQAVREARNE GRGGRGSGRGVGRGYGRGREGSGFVRGSFNNENISAAEDGETGKT
Sbjct: 61  PLPPAQAVREARNESGRGGRGSGRGVGRGYGRGREGSGFVRGSFNNENISAAEDGETGKT 120

Query: 121 TERRGYGGPRGRGGRRGGFNNGEAADGERPRRVFERHSGTGHGNEFKREGSGRGNWGRPT 180
           TERRGY GPRGRGGRRGGFNNGEAADGERPRRVFERHSGTGHGNEFKREGSGRGNWGRP+
Sbjct: 121 TERRGYAGPRGRGGRRGGFNNGEAADGERPRRVFERHSGTGHGNEFKREGSGRGNWGRPS 180

Query: 181 EEFAETVEEAVNEMEKNMGDEKPVQEDNAEGVNTENAAKEPEETEPEDKEMTLEEYEKLL 240
           EEF+ETVEEAVNEMEKNMGDEKPVQEDNAEGVNTENAAKEPEETEPEDKEMTLEEYEKLL
Sbjct: 181 EEFSETVEEAVNEMEKNMGDEKPVQEDNAEGVNTENAAKEPEETEPEDKEMTLEEYEKLL 240

Query: 241 EEKRKALMALKTEERKVDPKEFASMQQLSCKKENNDIFIKLGSEKDKRKEIADKEERTKK 300
           EEKRKAL+ALKTEERKVDPKEFASMQQLSCKKENNDIFIKLGSEKDKRKEIADKEER KK
Sbjct: 241 EEKRKALLALKTEERKVDPKEFASMQQLSCKKENNDIFIKLGSEKDKRKEIADKEERNKK 300

Query: 301 SLSINEFLKPAEGERHYGSGGRGRGRGGRGSRGGYSGNSISNVPAPSIEDPGQFPTLGA 360
           SLSINEFLKPAEGERHYGSGGRGRGR GRGSRGGYSGNSISNVPAPSIEDPGQFPTLGA
Sbjct: 301 SLSINEFLKPAEGERHYGSGGRGRGR-GRGSRGGYSGNSISNVPAPSIEDPGQFPTLGA 358

[Close]

BLAST of Carg04980 vs. ExPASy TrEMBL
Match: A0A6J1H5P3 (RGG repeats nuclear RNA binding protein A-like OS=Cucurbita moschata OX=3662 GN=LOC111460714 PE=4 SV=1)

HSP 1 Score: 644.0 bits (1660), Expect = 7.2e-181
Identity = 351/359 (97.77%), Postives = 352/359 (98.05%), Query Frame = 0


Query: 363 MATVNPFDLLGDDDAEDPSQLIAAKKVVAAPPKKGPVQTKPAALGAQQNKAASLPSKPLP 422
           MATVNPFDLLGDDDAEDPSQLIAAKKVVAAPPKKGP QTKPAALGAQQNKAASLPSKPLP
Sbjct: 1   MATVNPFDLLGDDDAEDPSQLIAAKKVVAAPPKKGPAQTKPAALGAQQNKAASLPSKPLP 60

Query: 423 PAQAVREARNESSRGGRGSGRGGGRGYGRGREGSGFNRGSFNNESSSAAEDGETGKTTER 482
           PAQAVREARNESSRGGRGSGRGGGRGYGRGREGSGFNRGSFNNESSSAAEDGETGKTTER
Sbjct: 61  PAQAVREARNESSRGGRGSGRGGGRGYGRGREGSGFNRGSFNNESSSAAEDGETGKTTER 120

Query: 483 RGYAGPRGRGGRRGGFNNGEATDGERPRRVFERHSGTGHGNEFKREGSGRGNWGRPTEEF 542
           RGYAGPRGRGGRRG FNNGEATDGERPRRVFERHSGTGHGNEFKREGSGRGNWGRPTEEF
Sbjct: 121 RGYAGPRGRGGRRGDFNNGEATDGERPRRVFERHSGTGHGNEFKREGSGRGNWGRPTEEF 180

Query: 543 AEAAEEAVNETEKNMGDEKPVQEDDTGDVNAENSAKEPEETEPEDKEMTLEEYEKLLEEK 602
           AEAAEEAVNE EKNMGDEKPVQEDD G VNAENSAKEPEETEPEDKEMTLEEYEKLLEEK
Sbjct: 181 AEAAEEAVNEMEKNMGDEKPVQEDDAGGVNAENSAKEPEETEPEDKEMTLEEYEKLLEEK 240

Query: 603 RKALLTLKTEGRKVDPKEFASMQQLSCKKENNDIFIKLGSEKDKRKEIAEKEDRTKKSLS 662
           RKALLTLKTE RKVDPKEFASMQQLSCKKENNDIFIKLGSEKDKRKEIAEKE+RTKK LS
Sbjct: 241 RKALLTLKTEERKVDPKEFASMQQLSCKKENNDIFIKLGSEKDKRKEIAEKEERTKKFLS 300

Query: 663 INEFLKPAEGERHYAPGGRGRGRGRGSRGGGGGYSGNSTINVATPSIEDPGQFPTLGAK 722
           INEFLKPAEGERHYAPGGRGRGRGRGSRGGGGGYSGNSTINVATPSIEDPGQFPTLGAK
Sbjct: 301 INEFLKPAEGERHYAPGGRGRGRGRGSRGGGGGYSGNSTINVATPSIEDPGQFPTLGAK 359

[Close]

BLAST of Carg04980 vs. ExPASy TrEMBL
Match: A0A6J1KTS3 (RGG repeats nuclear RNA binding protein A-like OS=Cucurbita maxima OX=3661 GN=LOC111497567 PE=4 SV=1)

HSP 1 Score: 637.1 bits (1642), Expect = 8.8e-179
Identity = 347/359 (96.66%), Postives = 352/359 (98.05%), Query Frame = 0


Query: 363 MATVNPFDLLGDDDAEDPSQLIAAKKVVAAPPKKGPVQTKPAALGAQQNKAASLPSKPLP 422
           MATVNPFDLLGDDDAEDPSQLIAAKKVVAAPPKKGP QTKPAALGAQQNKAASLPSKPLP
Sbjct: 1   MATVNPFDLLGDDDAEDPSQLIAAKKVVAAPPKKGPAQTKPAALGAQQNKAASLPSKPLP 60

Query: 423 PAQAVREARNESSRGGRGSGRGGGRGYGRGREGSGFNRGSFNNESSSAAEDGETGKTTER 482
           PAQAVREARNESSRGGRGSGR GGRGYGRGREG+GFNRGSFNNESSSAAEDGETGKTTER
Sbjct: 61  PAQAVREARNESSRGGRGSGRVGGRGYGRGREGAGFNRGSFNNESSSAAEDGETGKTTER 120

Query: 483 RGYAGPRGRGGRRGGFNNGEATDGERPRRVFERHSGTGHGNEFKREGSGRGNWGRPTEEF 542
           R YAGPRGRGGRRGGFNNGEATDGERPRRVFERHSGTGHGNEFKREGSGRGNWGRPTEEF
Sbjct: 121 RAYAGPRGRGGRRGGFNNGEATDGERPRRVFERHSGTGHGNEFKREGSGRGNWGRPTEEF 180

Query: 543 AEAAEEAVNETEKNMGDEKPVQEDDTGDVNAENSAKEPEETEPEDKEMTLEEYEKLLEEK 602
           AEAAEEAVNETEKN+GDEKPVQEDD G VNAENSAKEPEETEPEDKEMTLEEYEKLLEEK
Sbjct: 181 AEAAEEAVNETEKNIGDEKPVQEDDAGGVNAENSAKEPEETEPEDKEMTLEEYEKLLEEK 240

Query: 603 RKALLTLKTEGRKVDPKEFASMQQLSCKKENNDIFIKLGSEKDKRKEIAEKEDRTKKSLS 662
           RKALLTLKTE RKVDPKEFASMQQLSCKKENNDIFIKLG+EKDKRKEIA+KE+RTKKSLS
Sbjct: 241 RKALLTLKTEERKVDPKEFASMQQLSCKKENNDIFIKLGTEKDKRKEIADKEERTKKSLS 300

Query: 663 INEFLKPAEGERHYAPGGRGRGRGRGSRGGGGGYSGNSTINVATPSIEDPGQFPTLGAK 722
           INEFLKPAEGERHYAPGGRGRGRGRGSRGGGGGYSGNSTI VATPSIEDPGQFPTLGAK
Sbjct: 301 INEFLKPAEGERHYAPGGRGRGRGRGSRGGGGGYSGNSTIIVATPSIEDPGQFPTLGAK 359

[Close]

BLAST of Carg04980 vs. ExPASy TrEMBL
Match: A0A6J1EYL1 (RGG repeats nuclear RNA binding protein A-like isoform X2 OS=Cucurbita moschata OX=3662 GN=LOC111439720 PE=4 SV=1)

HSP 1 Score: 564.7 bits (1454), Expect = 5.6e-157
Identity = 312/359 (86.91%), Postives = 326/359 (90.81%), Query Frame = 0


Query: 1   MATVNPFDLLGDDDAEDPSQLIAAKKVAAVTSPAPKKGPAQNKPAALGAQQNKPASLPSK 60
           MATVNPFDLLGDDDAEDPSQLIAAK+VAAVT+P PKKG AQ KP    +QQNKPASLPSK
Sbjct: 1   MATVNPFDLLGDDDAEDPSQLIAAKQVAAVTAPPPKKGSAQTKPVVSPSQQNKPASLPSK 60

Query: 61  PLPPAQAVREARNEGGRGGRGSGRGVGRGYGRGREGSGFVRGSFNNENISAAEDGETGKT 120
           PLPP+QAVREARNEG RGGRGSGRG GRGYGRGREG GF R   N+EN SA EDGE GKT
Sbjct: 61  PLPPSQAVREARNEGSRGGRGSGRGGGRGYGRGREGGGFNRDFANSENTSAPEDGEAGKT 120

Query: 121 TERRGYGGPRGRGGRRGGFNNGEAADGERPRRVFERHSGTGHGNEFKREGSGRGNWGRPT 180
           TERRGYGGPRGRGGRRGGFNNGEA DGERPRRVFERHSGTG GNE KREG+GRGNWGRP 
Sbjct: 121 TERRGYGGPRGRGGRRGGFNNGEAGDGERPRRVFERHSGTGRGNENKREGAGRGNWGRPA 180

Query: 181 EEFAETVEEAVNEMEKNMGDEKPVQEDNAEGVNTENAAKEPEETEPEDKEMTLEEYEKLL 240
           +EFAE  EEAVNE EKN+GDEKPVQE++  GVN+EN AKEPEETEPEDKEMTLEEYEKLL
Sbjct: 181 DEFAEVAEEAVNEPEKNVGDEKPVQEEDTSGVNSENPAKEPEETEPEDKEMTLEEYEKLL 240

Query: 241 EEKRKALMALKTEERKVDPKEFASMQQLSCKKENNDIFIKLGSEKDKRKEIADKEERTKK 300
           E+KRKALMALKTEERKVDPKEFASMQQLS KKENNDIFIKLGSEKDKRKEIADKEERTKK
Sbjct: 241 EDKRKALMALKTEERKVDPKEFASMQQLSSKKENNDIFIKLGSEKDKRKEIADKEERTKK 300

Query: 301 SLSINEFLKPAEGERHYGSGGRGRGRGGRGSRGGYSGNSISNVPAPSIEDPGQFPTLGA 360
           SLSINEFL+PAEGERHY  GGRGRGR GRGSRGGY G+SISNV APSIEDPGQFPTLGA
Sbjct: 301 SLSINEFLRPAEGERHYTPGGRGRGR-GRGSRGGYGGSSISNVAAPSIEDPGQFPTLGA 358

[Close]

BLAST of Carg04980 vs. TAIR 10
Match: AT4G16830.1 (Hyaluronan / mRNA binding family )

HSP 1 Score: 288.9 bits (738), Expect = 1.1e-77
Identity = 213/377 (56.50%), Postives = 252/377 (66.84%), Query Frame = 0


Query: 363 MATVNPFDLLGDDDAEDPSQLIAAKKVVAAPPKKGPVQTKPAALGAQQNKAASLPSKPLP 422
           MAT+NPFDLL DDDAEDPSQL  A + +    K G V + PA        A  LPSKPLP
Sbjct: 1   MATLNPFDLL-DDDAEDPSQLAVAIEKIDKSKKSGQVSSLPA------KSAPKLPSKPLP 60

Query: 423 PAQAVREARNESSRGGRGSGRGGGRGYGRGREGSGFNRGSFNNESSSA----AEDGETGK 482
           PAQAVREAR+++ RGG G G     G+ RGR   G+NR   NN  S      + +G+  K
Sbjct: 61  PAQAVREARSDAPRGGGGRG-----GFNRGR--GGYNRDDGNNGYSGGYTKPSGEGDVSK 120

Query: 483 TT-ERRGYAG-PRGR---------GGRRGGFNNGEATDGERPRRVFERHSGTGHGNEFKR 542
           ++ ERRG  G PRG          GGRRGGF+N E  DGERPRR FER SGTG G++FKR
Sbjct: 121 SSYERRGGGGAPRGSFRGEGGGPGGGRRGGFSN-EGGDGERPRRAFERRSGTGRGSDFKR 180

Query: 543 EGSGRGNWGRPTEEFAEAAEEAVN-ETEKNMGDEKPVQEDDTGDVNAENSAKEPEETEPE 602
           +GSGRGNWG P EE A   E     ETEK++G EKP  +D   D N E++    EE EPE
Sbjct: 181 DGSGRGNWGTPGEEIAAETEAVAGVETEKDVG-EKPAVDDVAADANKEDTV--VEEKEPE 240

Query: 603 DKEMTLEEYEKLLEEKRKALLTLKTEGRKVDPKEFASMQQLSCKKENNDIFIKLGSEKDK 662
           DKEMTL+EYEK+LEEK+KAL +L T  RKVD K F SMQQLS KK N++IFIKLGS+KDK
Sbjct: 241 DKEMTLDEYEKILEEKKKALQSLTTSERKVDTKVFESMQQLSNKKSNDEIFIKLGSDKDK 300

Query: 663 RKEIAEKEDRTKKSLSINEFLKPAEGERHYAPGGRGRGRGRGSRGGGGGYSGNS--TINV 722
           RK+  +KE++ KK++SINEFLKPAEG  +Y  GGRG GRGRG RG GG  SG S    N 
Sbjct: 301 RKD--DKEEKAKKAVSINEFLKPAEGGNYYR-GGRG-GRGRGGRGRGGVSSGESGGYRNE 355

[Close]

BLAST of Carg04980 vs. TAIR 10
Match: AT4G17520.1 (Hyaluronan / mRNA binding family )

HSP 1 Score: 245.0 bits (624), Expect = 1.9e-64
Identity = 197/385 (51.17%), Postives = 245/385 (63.64%), Query Frame = 0


Query: 363 MATVNPFDLLGDDDAEDPSQLIAAK--KVVAAPPKKGPVQTKPAALGAQQNKAASLPSKP 422
           MA+VNPFDLL DDDAEDPSQ++A+K  KVVA      PVQT          K+  +P+KP
Sbjct: 1   MASVNPFDLL-DDDAEDPSQIVASKPLKVVA------PVQTA---------KSGKMPTKP 60

Query: 423 LPPAQAVREARNESSRGGRGSGRGGGRGYGRGREGSGFNRGSFNNESSSAAEDGETG--- 482
            PP+QAVREARN +  GGRG+GRGG   YGRG  G G NR S NN+   A E+G  G   
Sbjct: 61  PPPSQAVREARN-APGGGRGAGRGG--SYGRGGRG-GNNRDSRNND-GPANENGYGGGYR 120

Query: 483 KTTE----RRGYAGPRG--RGGRRGGFNN-GEATDGERPRRVFERHSGTGHGNEFKREGS 542
           ++ E    RRG  GP G  RG RRG ++N G++ D ERPR+ ++RHS T +GNE KR+G+
Sbjct: 121 RSEEGDGARRG--GPVGGYRGDRRGSYSNGGDSGDSERPRKNYDRHSRTAYGNEDKRDGA 180

Query: 543 GRGNWGRPTEEFAEAAEEAVNETEKNMGDEKPVQEDDTGDVNAENSAKEPEETEPEDKEM 602
           GR NWG   ++     EE+    +KN+  EK   E +  D   E  A++ EE +PEDKEM
Sbjct: 181 GRANWGTTQDDITPVTEESTAVVDKNLTVEKQDGEGEATDAKNETPAEKAEE-KPEDKEM 240

Query: 603 TLEEYEKLLEEKRKALLTLKTEGRKVDPKEFASMQQLSCKKENND-IFIKLGSEKDKRKE 662
           TLEEYEK+LEEK+KAL   K E RKVD K F +MQQLS KK NND +FIKLG+EKDKR  
Sbjct: 241 TLEEYEKVLEEKKKALQATKVEERKVDTKAFEAMQQLSSKKSNNDEVFIKLGTEKDKR-- 300

Query: 663 IAEKEDRTKKSLSINEFLKPAEGERHYAPGG--RGRGRGRGSR-------------GGGG 720
           I E+E++T+KSLSINEFLKPA+G+ +Y P G  +G   GRG R             GG  
Sbjct: 301 ITEREEKTRKSLSINEFLKPADGKSYYRPRGGYQGGREGRGPREGNQRDGGRNLREGGRN 359

[Close]

BLAST of Carg04980 vs. TAIR 10
Match: AT5G47210.1 (Hyaluronan / mRNA binding family )

HSP 1 Score: 237.3 bits (604), Expect = 3.9e-62
Identity = 190/378 (50.26%), Postives = 227/378 (60.05%), Query Frame = 0


Query: 1   MATVNPFDLLGDDDAEDPSQLIAAKKVAAVTSPAPKKGPAQNKPAALGAQQNKPASLPSK 60
           MA++NPFDLLG DDAEDPSQL  A                + + AA   Q  K A  P+K
Sbjct: 1   MASLNPFDLLG-DDAEDPSQLAVALS-------------QKVEKAAAAVQPPKAAKFPTK 60

Query: 61  PLPPAQAVREARN--EGGRGGRGSGRGVGRGYGRGREGSGFVRGSFNNE---NISAAEDG 120
           P PP+QAVRE+RN  +GGRGG G GRG   G+ RGR   G+ R + NN+   N +    G
Sbjct: 61  PAPPSQAVRESRNAPQGGRGGTG-GRG---GFSRGRGNGGYNRDNRNNDAPGNENGFSGG 120

Query: 121 -----ETGKTTERRG-YGGPRGRGG----RRGGFNNGEAADGERPRRVFERHSGTGHGNE 180
                E      R G  GG R  GG    RRGG  NGE+ D ERP R ++RHS TGHG  
Sbjct: 121 YRRPSEDADGASRGGSVGGYRVGGGREGPRRGGVANGESGDVERPPRNYDRHSRTGHGTG 180

Query: 181 FKREGSGRGNWGRPTEEFAETVEEAVNEMEKNMGDEKPVQEDNAEGVNTENAAKEPEETE 240
            KR G GRGNWG   ++   T EE   E+EK+   EK   ED       E  A+E  + E
Sbjct: 181 MKRNGGGRGNWGTTEDDIPPTSEEPTTEVEKSPVAEKQGGEDETPEAKKELTAEEKAQKE 240

Query: 241 PED---KEMTLEEYEKLLEEKRKALMALKTEERKVDPKEFASMQQLSCKKE-NNDIFIKL 300
            E+   +EMTLEEYEK+LEEK+KAL A K EERKVD K F SMQQLS KK  + +IFIKL
Sbjct: 241 AEEAEAREMTLEEYEKILEEKKKALQATKVEERKVDTKVFESMQQLSNKKNTDEEIFIKL 300

Query: 301 GSEKDKRKEIADKEERTKKSLSINEFLKPAEGERHYGSGGRGRGRGGRGSRG-GYSGNSI 359
           GS+K+KRK   D  E+ KKSLSINEFLKPA+G+R+ G GG  RGRGGRG RG G +    
Sbjct: 301 GSDKEKRK---DATEKAKKSLSINEFLKPADGKRYNGRGGGSRGRGGRGGRGEGGNQRYA 357

[Close]

BLAST of Carg04980 vs. TAIR 10
Match: AT4G16830.3 (Hyaluronan / mRNA binding family )

HSP 1 Score: 235.0 bits (598), Expect = 1.9e-61
Identity = 176/313 (56.23%), Postives = 211/313 (67.41%), Query Frame = 0


Query: 427 VREARNESSRGGRGSGRGGGRGYGRGREGSGFNRGSFNNESSSA----AEDGETGKTT-E 486
           VREAR+++ RGG G G     G+ RGR   G+NR   NN  S      + +G+  K++ E
Sbjct: 48  VREARSDAPRGGGGRG-----GFNRGR--GGYNRDDGNNGYSGGYTKPSGEGDVSKSSYE 107

Query: 487 RRGYAG-PRGR---------GGRRGGFNNGEATDGERPRRVFERHSGTGHGNEFKREGSG 546
           RRG  G PRG          GGRRGGF+N E  DGERPRR FER SGTG G++FKR+GSG
Sbjct: 108 RRGGGGAPRGSFRGEGGGPGGGRRGGFSN-EGGDGERPRRAFERRSGTGRGSDFKRDGSG 167

Query: 547 RGNWGRPTEEFAEAAEEAVN-ETEKNMGDEKPVQEDDTGDVNAENSAKEPEETEPEDKEM 606
           RGNWG P EE A   E     ETEK++G EKP  +D   D N E++    EE EPEDKEM
Sbjct: 168 RGNWGTPGEEIAAETEAVAGVETEKDVG-EKPAVDDVAADANKEDTV--VEEKEPEDKEM 227

Query: 607 TLEEYEKLLEEKRKALLTLKTEGRKVDPKEFASMQQLSCKKENNDIFIKLGSEKDKRKEI 666
           TL+EYEK+LEEK+KAL +L T  RKVD K F SMQQLS KK N++IFIKLGS+KDKRK+ 
Sbjct: 228 TLDEYEKILEEKKKALQSLTTSERKVDTKVFESMQQLSNKKSNDEIFIKLGSDKDKRKD- 287

Query: 667 AEKEDRTKKSLSINEFLKPAEGERHYAPGGRGRGRGRGSRGGGGGYSGNS--TINVATPS 722
            +KE++ KK++SINEFLKPAEG  +Y  GGRG GRGRG RG GG  SG S    N A P+
Sbjct: 288 -DKEEKAKKAVSINEFLKPAEGGNYYR-GGRG-GRGRGGRGRGGVSSGESGGYRNEAAPA 345

[Close]

BLAST of Carg04980 vs. TAIR 10
Match: AT4G16830.2 (Hyaluronan / mRNA binding family )

HSP 1 Score: 210.7 bits (535), Expect = 3.9e-54
Identity = 137/220 (62.27%), Postives = 161/220 (73.18%), Query Frame = 0


Query: 505 DGERPRRVFERHSGTGHGNEFKREGSGRGNWGRPTEEFAEAAEEAVN-ETEKNMGDEKPV 564
           DGERPRR FER SGTG G++FKR+GSGRGNWG P EE A   E     ETEK++G EKP 
Sbjct: 53  DGERPRRAFERRSGTGRGSDFKRDGSGRGNWGTPGEEIAAETEAVAGVETEKDVG-EKPA 112

Query: 565 QEDDTGDVNAENSAKEPEETEPEDKEMTLEEYEKLLEEKRKALLTLKTEGRKVDPKEFAS 624
            +D   D N E++    EE EPEDKEMTL+EYEK+LEEK+KAL +L T  RKVD K F S
Sbjct: 113 VDDVAADANKEDTV--VEEKEPEDKEMTLDEYEKILEEKKKALQSLTTSERKVDTKVFES 172

Query: 625 MQQLSCKKENNDIFIKLGSEKDKRKEIAEKEDRTKKSLSINEFLKPAEGERHYAPGGRGR 684
           MQQLS KK N++IFIKLGS+KDKRK+  +KE++ KK++SINEFLKPAEG  +Y  GGRG 
Sbjct: 173 MQQLSNKKSNDEIFIKLGSDKDKRKD--DKEEKAKKAVSINEFLKPAEGGNYYR-GGRG- 232

Query: 685 GRGRGSRGGGGGYSGNS--TINVATPSIEDPGQFPTLGAK 722
           GRGRG RG GG  SG S    N A P+I D  QFP+LG K
Sbjct: 233 GRGRGGRGRGGVSSGESGGYRNEAAPAIGDAAQFPSLGGK 265

The following BLAST results are available for this feature:

BLAST of Carg04980 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG7025351.1	0.0e+00	100.00	RGG repeats nuclear RNA binding protein B [Cucurbita argyrosperma subsp. argyros...	[more]
KAG7011066.1	8.2e-288	76.29	RGG repeats nuclear RNA binding protein B [Cucurbita argyrosperma subsp. argyros...	[more]
KAG6575278.1	2.0e-286	77.65	RGG repeats nuclear RNA binding protein B, partial [Cucurbita argyrosperma subsp...	[more]
KAG6592943.1	5.9e-185	99.44	RGG repeats nuclear RNA binding protein B, partial [Cucurbita argyrosperma subsp...	[more]
KAG6592944.1	2.5e-183	98.89	RGG repeats nuclear RNA binding protein B, partial [Cucurbita argyrosperma subsp...	[more]

BLAST of Carg04980 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
O23523	1.6e-76	56.50	RGG repeats nuclear RNA binding protein A OS=Arabidopsis thaliana OX=3702 GN=RGG...	[more]
Q9SQ56	2.1e-68	59.41	RGG repeats nuclear RNA binding protein A (Fragment) OS=Nicotiana tabacum OX=409...	[more]
O23593	2.6e-63	51.17	RGG repeats nuclear RNA binding protein B OS=Arabidopsis thaliana OX=3702 GN=RGG...	[more]
Q9LVT8	5.5e-61	50.26	RGG repeats nuclear RNA binding protein C OS=Arabidopsis thaliana OX=3702 GN=RGG...	[more]

BLAST of Carg04980 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1H755	2.0e-183	98.05	RGG repeats nuclear RNA binding protein A-like OS=Cucurbita moschata OX=3662 GN=...	[more]
A0A6J1KVE4	1.9e-181	97.49	RGG repeats nuclear RNA binding protein A-like OS=Cucurbita maxima OX=3661 GN=LO...	[more]
A0A6J1H5P3	7.2e-181	97.77	RGG repeats nuclear RNA binding protein A-like OS=Cucurbita moschata OX=3662 GN=...	[more]
A0A6J1KTS3	8.8e-179	96.66	RGG repeats nuclear RNA binding protein A-like OS=Cucurbita maxima OX=3661 GN=LO...	[more]
A0A6J1EYL1	5.6e-157	86.91	RGG repeats nuclear RNA binding protein A-like isoform X2 OS=Cucurbita moschata ...	[more]

BLAST of Carg04980 vs. TAIR 10


Match Name	E-value	Identity	Description
AT4G16830.1	1.1e-77	56.50	Hyaluronan / mRNA binding family	[more]
AT4G17520.1	1.9e-64	51.17	Hyaluronan / mRNA binding family	[more]
AT5G47210.1	3.9e-62	50.26	Hyaluronan / mRNA binding family	[more]
AT4G16830.3	1.9e-61	56.23	Hyaluronan / mRNA binding family	[more]
AT4G16830.2	3.9e-54	62.27	Hyaluronan / mRNA binding family	[more]

InterPro

Analysis Name: InterPro Annotations of Silver-seed gourd (SMH-JMG-627) v2
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 592..612
None	No IPR available	COILS	Coil	Coil	coord: 233..256
None	No IPR available	GENE3D	6.10.140.1040		coord: 148..261 e-value: 1.2E-9 score: 40.4 coord: 507..620 e-value: 8.4E-10 score: 40.9
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 286..321
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 384..592
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 145..175
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 541..592
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 694..710
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 649..721
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 101..115
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 195..232
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 29..181
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 286..356
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 216..232
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 504..534
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 649..680
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 458..474
None	No IPR available	PANTHER	PTHR12299:SF53	RGG REPEATS NUCLEAR RNA BINDING PROTEIN A	coord: 1..359 coord: 363..721
IPR006861	Hyaluronan/mRNA-binding protein	SMART	SM01233	HABP4_PAI_RBP1_2	coord: 509..617 e-value: 1.1E-33 score: 127.8 coord: 150..258 e-value: 2.1E-33 score: 127.0
IPR006861	Hyaluronan/mRNA-binding protein	PFAM	PF04774	HABP4_PAI-RBP1	coord: 150..257 e-value: 3.7E-25 score: 89.0 coord: 509..616 e-value: 1.2E-24 score: 87.4
IPR019084	Stm1-like, N-terminal	PFAM	PF09598	Stm1_N	coord: 363..440 e-value: 7.7E-20 score: 71.5 coord: 1..81 e-value: 2.6E-20 score: 73.0
IPR039764	RNA binding protein HABP4/SERBP1	PANTHER	PTHR12299	HYALURONIC ACID-BINDING PROTEIN 4	coord: 363..721
IPR039764	RNA binding protein HABP4/SERBP1	PANTHER	PTHR12299	HYALURONIC ACID-BINDING PROTEIN 4	coord: 1..359

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Carg04980-RA	Carg04980-RA	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0110165	cellular anatomical entity
molecular_function	GO:0003723	RNA binding