Carg04935 (gene) Silver-seed gourd (SMH-JMG-627) v2

Overview


Name	Carg04935
Type	gene
Organism	Cucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
Description	F-box protein
Location	Carg_Chr08: 536889 .. 539058 (+)
RNA-Seq Expression	Carg04935
Synteny	Carg04935

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

TTGAATCGTGGTTTATCTTTCGTCGGATTTTCTGAGCGTGGTCTCTCTCTCTCTCCCTTGTTCTGATCTCGATTAAATCGGAAATTTCAACGATTCCGCCGGAATTTGAAGTGCGAAATTATTGATATCGACTAGGATCGCATTATCTCTTCACTCTACGTCATCAGATTCGGAGTAAAGTGTATTTTACTTCGTTTTCTCGGGCGTATGATCTCCTAGGGTTTGATCTCCATCTTTCTCTCTCTGTCTATCCAATTTTTATTCTCTTACAGCGATTTGCAAGATTGTATGGTTTTTCTGCATCATCATAAGTTTTGGCATTCGGTTGACTGTTAACCTTACCTACAATTTTCATTGAAGAACTCAGCGTTTCAAACTGGCAATGCCTATGAAACTTGGAAACGTATGGATGTTTCTTCTGCTACTGGAAACACGATTTTCAAATTTTTTTCGCTTTCAATTTATTTTTCAGTTTATGATATTTTCTCTTGTGGAAGAGGTCTTTGAGTTCTAAAATTCTAAGACTTTTAACTGATTAGTGTTGATCAGAATTGGTAGATGAACTACTCAACGTTTGAGCTATTCAATATTTCTTTTAATCCTCTCTTAAAGACTTTCGTTGTATATAGATGTACAATACACACAGCAAATGGCATGCAGCCCTCGCCACTAAAGTACGGAGATCATGTGTTAGTTCTGTGTAGCATTTTGTTCGCCTTCGAACAACTTATCTATTTGTTGTGTTTGTAGTTTGTATTTGAATGAGTAATCTATTTGAGTTTCCTCAGTTTAGCACGTGGTAGTTTTTATCTTTTTAATGAAAGCCTGTGGTAGTTTTTCTTTGAAACTCGTTCTATGGAGAATGTAAGTCATGGCTACCACTTTAATTCTCCAATGTAATTCATATGATCTTGTAGGTATTATTTGTTACTTTCTACTACAATGCTCTGTCTCCTCTTGTGAAATTTTCCATCACAAATGTGACTGTTTTCAATATAATTTAAATTACAGTATCATCTTTCCTTGTAAATTGATCTAAATGTATTGTTCTGACTAGTCTTTGTGATTTATTGTTGCAGGATCCAATCCTTGCCCCTCTTGTTATACTACTTCTATTTGGAAAATGAGATGGGAAGAAATTTTGAAGGTGATTTTTCCGTTACTGGAAGGTGTGGACCTTGCTTCCTGCATGTTAGTGTGCAAGCAGTGGAGAGACATAGCTCGAGATGATTTCTTTTGGAAATGTTTGTGCGCCAAGAAGTGGCCTTCAACCTGCAAAAATCCCGATCCTCCGACCAATACCTACTATAAATTATATCAAAACTTTTACAAACGTCCCAATAATCGACGTCTTCTCCCTCCTCGACTTTCCTTTGATGATCTAGAGTTTTTTATTGACATTTGGAGTGAAGACAGATTAATCTTCTCAGAAGTAGTTGCAGGTCAAGTCCTCCAGAGTGGTATGAAGCCACCACCTGGTACTAGTAATGTGATTAATTATCACCTAGAAGCCCCAGAGTTCAAGATGACACTACCTGTTCAGCCAAGGTTCTCAATTCCTATATCCCATACTGTGAGCGTATCCGTGCTCGTAGGACGCAAGGATTCCAATAAAGTTGCTCGTATAGTCAACAAATCTGTATTTGATTACATTGATCGAACATCATACAGGACATTGGCTTTTGACTACCTTGATTTTTCACCTCTCTACCCATTTGTCTCCGGAATCCGAGCATGGATCTCATTGCTTTTCTTGGATGATGGAAATGATGGCATAATTGATGTTTTTGGAATTGTAATGGATTTCTGTGATGCTGCAAACACAAAGGATGAGGTATTATGGCTTTTGGACTTGCTTGATTGGAAATGAAGGGTTACATTTTCTGGGAAAGAACATTCAAAAAGAGTTGGGGCCACATGGTGGTCACCAAGTATGAAACTCTCACATCGTTGCTGAAACCGTCGCCCTGATTTTTCTGGTATCAATTATTACCTTACTTGTTTATTGTCACTGTACATAATTTTTCAACTCCTTTCATCAATAAATATGAATGATTTTCTTTTCATGAACTTATGTTTTCGTAGTTTATGTGAGTCACCTGCATTTTGATTCAGACTTAAAAGCCATTTTCTATATTGCTAGGCTTATTTCTTAGCAATATATGTATGT

mRNA sequence

TTGAATCGTGGTTTATCTTTCGTCGGATTTTCTGAGCGTGGTCTCTCTCTCTCTCCCTTGTTCTGATCTCGATTAAATCGGAAATTTCAACGATTCCGCCGGAATTTGAAGTGCGAAATTATTGATATCGACTAGGATCGCATTATCTCTTCACTCTACGTCATCAGATTCGGAGTAAAGTGTATTTTACTTCGTTTTCTCGGGCGTATGATCTCCTAGGGTTTGATCTCCATCTTTCTCTCTCTGTCTATCCAATTTTTATTCTCTTACAGCGATTTGCAAGATTGTATGGTTTTTCTGCATCATCATAAGTTTTGGCATTCGGTTGACTGTTAACCTTACCTACAATTTTCATTGAAGAACTCAGCGTTTCAAACTGGCAATGCCTATGAAACTTGGAAACGATCCAATCCTTGCCCCTCTTGTTATACTACTTCTATTTGGAAAATGAGATGGGAAGAAATTTTGAAGGTGATTTTTCCGTTACTGGAAGGTGTGGACCTTGCTTCCTGCATGTTAGTGTGCAAGCAGTGGAGAGACATAGCTCGAGATGATTTCTTTTGGAAATGTTTGTGCGCCAAGAAGTGGCCTTCAACCTGCAAAAATCCCGATCCTCCGACCAATACCTACTATAAATTATATCAAAACTTTTACAAACGTCCCAATAATCGACGTCTTCTCCCTCCTCGACTTTCCTTTGATGATCTAGAGTTTTTTATTGACATTTGGAGTGAAGACAGATTAATCTTCTCAGAAGTAGTTGCAGGTCAAGTCCTCCAGAGTGGTATGAAGCCACCACCTGGTACTAGTAATGTGATTAATTATCACCTAGAAGCCCCAGAGTTCAAGATGACACTACCTGTTCAGCCAAGGTTCTCAATTCCTATATCCCATACTGTGAGCGTATCCGTGCTCGTAGGACGCAAGGATTCCAATAAAGTTGCTCGTATAGTCAACAAATCTGTATTTGATTACATTGATCGAACATCATACAGGACATTGGCTTTTGACTACCTTGATTTTTCACCTCTCTACCCATTTGTCTCCGGAATCCGAGCATGGATCTCATTGCTTTTCTTGGATGATGGAAATGATGGCATAATTGATGTTTTTGGAATTGTAATGGATTTCTGTGATGCTGCAAACACAAAGGATGAGGTATTATGGCTTTTGGACTTGCTTGATTGGAAATGAAGGGTTACATTTTCTGGGAAAGAACATTCAAAAAGAGTTGGGGCCACATGGTGGTCACCAAGTATGAAACTCTCACATCGTTGCTGAAACCGTCGCCCTGATTTTTCTGGTATCAATTATTACCTTACTTGTTTATTGTCACTGTACATAATTTTTCAACTCCTTTCATCAATAAATATGAATGATTTTCTTTTCATGAACTTATGTTTTCGTAGTTTATGTGAGTCACCTGCATTTTGATTCAGACTTAAAAGCCATTTTCTATATTGCTAGGCTTATTTCTTAGCAATATATGTATGT

Coding sequence (CDS)

ATGAGATGGGAAGAAATTTTGAAGGTGATTTTTCCGTTACTGGAAGGTGTGGACCTTGCTTCCTGCATGTTAGTGTGCAAGCAGTGGAGAGACATAGCTCGAGATGATTTCTTTTGGAAATGTTTGTGCGCCAAGAAGTGGCCTTCAACCTGCAAAAATCCCGATCCTCCGACCAATACCTACTATAAATTATATCAAAACTTTTACAAACGTCCCAATAATCGACGTCTTCTCCCTCCTCGACTTTCCTTTGATGATCTAGAGTTTTTTATTGACATTTGGAGTGAAGACAGATTAATCTTCTCAGAAGTAGTTGCAGGTCAAGTCCTCCAGAGTGGTATGAAGCCACCACCTGGTACTAGTAATGTGATTAATTATCACCTAGAAGCCCCAGAGTTCAAGATGACACTACCTGTTCAGCCAAGGTTCTCAATTCCTATATCCCATACTGTGAGCGTATCCGTGCTCGTAGGACGCAAGGATTCCAATAAAGTTGCTCGTATAGTCAACAAATCTGTATTTGATTACATTGATCGAACATCATACAGGACATTGGCTTTTGACTACCTTGATTTTTCACCTCTCTACCCATTTGTCTCCGGAATCCGAGCATGGATCTCATTGCTTTTCTTGGATGATGGAAATGATGGCATAATTGATGTTTTTGGAATTGTAATGGATTTCTGTGATGCTGCAAACACAAAGGATGAGGTATTATGGCTTTTGGACTTGCTTGATTGGAAATGA

Protein sequence

MRWEEILKVIFPLLEGVDLASCMLVCKQWRDIARDDFFWKCLCAKKWPSTCKNPDPPTNTYYKLYQNFYKRPNNRRLLPPRLSFDDLEFFIDIWSEDRLIFSEVVAGQVLQSGMKPPPGTSNVINYHLEAPEFKMTLPVQPRFSIPISHTVSVSVLVGRKDSNKVARIVNKSVFDYIDRTSYRTLAFDYLDFSPLYPFVSGIRAWISLLFLDDGNDGIIDVFGIVMDFCDAANTKDEVLWLLDLLDWK

Homology

[Close]

BLAST of Carg04935 vs. NCBI nr
Match: XP_022959961.1 (F-box protein At5g39250 [Cucurbita moschata] >XP_022959962.1 F-box protein At5g39250 [Cucurbita moschata] >XP_022959963.1 F-box protein At5g39250 [Cucurbita moschata] >KAG7025307.1 F-box protein [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 521.5 bits (1342), Expect = 3.8e-144
Identity = 248/248 (100.00%), Postives = 248/248 (100.00%), Query Frame = 0


Query: 1   MRWEEILKVIFPLLEGVDLASCMLVCKQWRDIARDDFFWKCLCAKKWPSTCKNPDPPTNT 60
           MRWEEILKVIFPLLEGVDLASCMLVCKQWRDIARDDFFWKCLCAKKWPSTCKNPDPPTNT
Sbjct: 1   MRWEEILKVIFPLLEGVDLASCMLVCKQWRDIARDDFFWKCLCAKKWPSTCKNPDPPTNT 60

Query: 61  YYKLYQNFYKRPNNRRLLPPRLSFDDLEFFIDIWSEDRLIFSEVVAGQVLQSGMKPPPGT 120
           YYKLYQNFYKRPNNRRLLPPRLSFDDLEFFIDIWSEDRLIFSEVVAGQVLQSGMKPPPGT
Sbjct: 61  YYKLYQNFYKRPNNRRLLPPRLSFDDLEFFIDIWSEDRLIFSEVVAGQVLQSGMKPPPGT 120

Query: 121 SNVINYHLEAPEFKMTLPVQPRFSIPISHTVSVSVLVGRKDSNKVARIVNKSVFDYIDRT 180
           SNVINYHLEAPEFKMTLPVQPRFSIPISHTVSVSVLVGRKDSNKVARIVNKSVFDYIDRT
Sbjct: 121 SNVINYHLEAPEFKMTLPVQPRFSIPISHTVSVSVLVGRKDSNKVARIVNKSVFDYIDRT 180

Query: 181 SYRTLAFDYLDFSPLYPFVSGIRAWISLLFLDDGNDGIIDVFGIVMDFCDAANTKDEVLW 240
           SYRTLAFDYLDFSPLYPFVSGIRAWISLLFLDDGNDGIIDVFGIVMDFCDAANTKDEVLW
Sbjct: 181 SYRTLAFDYLDFSPLYPFVSGIRAWISLLFLDDGNDGIIDVFGIVMDFCDAANTKDEVLW 240

Query: 241 LLDLLDWK 249
           LLDLLDWK
Sbjct: 241 LLDLLDWK 248

[Close]

BLAST of Carg04935 vs. NCBI nr
Match: XP_023005069.1 (F-box protein At5g39250-like [Cucurbita maxima] >XP_023005070.1 F-box protein At5g39250-like [Cucurbita maxima] >XP_023005071.1 F-box protein At5g39250-like [Cucurbita maxima])

HSP 1 Score: 519.6 bits (1337), Expect = 1.5e-143
Identity = 247/248 (99.60%), Postives = 247/248 (99.60%), Query Frame = 0


Query: 1   MRWEEILKVIFPLLEGVDLASCMLVCKQWRDIARDDFFWKCLCAKKWPSTCKNPDPPTNT 60
           MRWEEILKVIFPLLEGVDLASCM VCKQWRDIARDDFFWKCLCAKKWPSTCKNPDPPTNT
Sbjct: 1   MRWEEILKVIFPLLEGVDLASCMAVCKQWRDIARDDFFWKCLCAKKWPSTCKNPDPPTNT 60

Query: 61  YYKLYQNFYKRPNNRRLLPPRLSFDDLEFFIDIWSEDRLIFSEVVAGQVLQSGMKPPPGT 120
           YYKLYQNFYKRPNNRRLLPPRLSFDDLEFFIDIWSEDRLIFSEVVAGQVLQSGMKPPPGT
Sbjct: 61  YYKLYQNFYKRPNNRRLLPPRLSFDDLEFFIDIWSEDRLIFSEVVAGQVLQSGMKPPPGT 120

Query: 121 SNVINYHLEAPEFKMTLPVQPRFSIPISHTVSVSVLVGRKDSNKVARIVNKSVFDYIDRT 180
           SNVINYHLEAPEFKMTLPVQPRFSIPISHTVSVSVLVGRKDSNKVARIVNKSVFDYIDRT
Sbjct: 121 SNVINYHLEAPEFKMTLPVQPRFSIPISHTVSVSVLVGRKDSNKVARIVNKSVFDYIDRT 180

Query: 181 SYRTLAFDYLDFSPLYPFVSGIRAWISLLFLDDGNDGIIDVFGIVMDFCDAANTKDEVLW 240
           SYRTLAFDYLDFSPLYPFVSGIRAWISLLFLDDGNDGIIDVFGIVMDFCDAANTKDEVLW
Sbjct: 181 SYRTLAFDYLDFSPLYPFVSGIRAWISLLFLDDGNDGIIDVFGIVMDFCDAANTKDEVLW 240

Query: 241 LLDLLDWK 249
           LLDLLDWK
Sbjct: 241 LLDLLDWK 248

[Close]

BLAST of Carg04935 vs. NCBI nr
Match: XP_023513418.1 (F-box protein At5g39250-like [Cucurbita pepo subsp. pepo] >XP_023513419.1 F-box protein At5g39250-like [Cucurbita pepo subsp. pepo] >XP_023513420.1 F-box protein At5g39250-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 518.5 bits (1334), Expect = 3.3e-143
Identity = 247/248 (99.60%), Postives = 247/248 (99.60%), Query Frame = 0


Query: 1   MRWEEILKVIFPLLEGVDLASCMLVCKQWRDIARDDFFWKCLCAKKWPSTCKNPDPPTNT 60
           MRWEEILKVIFPLLEGVDLASCMLVCKQWRDIARDDFFWKCLCAKKWPSTCKNPDPPTNT
Sbjct: 1   MRWEEILKVIFPLLEGVDLASCMLVCKQWRDIARDDFFWKCLCAKKWPSTCKNPDPPTNT 60

Query: 61  YYKLYQNFYKRPNNRRLLPPRLSFDDLEFFIDIWSEDRLIFSEVVAGQVLQSGMKPPPGT 120
           YYKLYQNFYKRPNNRRLLPPRLSFDDLEFFIDIWSEDRLIFSEVVAGQVLQSGMKPPPGT
Sbjct: 61  YYKLYQNFYKRPNNRRLLPPRLSFDDLEFFIDIWSEDRLIFSEVVAGQVLQSGMKPPPGT 120

Query: 121 SNVINYHLEAPEFKMTLPVQPRFSIPISHTVSVSVLVGRKDSNKVARIVNKSVFDYIDRT 180
           SNVINYHLEAPEFKMTLPVQPRFSIPISHTVSVSVLVGRKDSNKVA IVNKSVFDYIDRT
Sbjct: 121 SNVINYHLEAPEFKMTLPVQPRFSIPISHTVSVSVLVGRKDSNKVACIVNKSVFDYIDRT 180

Query: 181 SYRTLAFDYLDFSPLYPFVSGIRAWISLLFLDDGNDGIIDVFGIVMDFCDAANTKDEVLW 240
           SYRTLAFDYLDFSPLYPFVSGIRAWISLLFLDDGNDGIIDVFGIVMDFCDAANTKDEVLW
Sbjct: 181 SYRTLAFDYLDFSPLYPFVSGIRAWISLLFLDDGNDGIIDVFGIVMDFCDAANTKDEVLW 240

Query: 241 LLDLLDWK 249
           LLDLLDWK
Sbjct: 241 LLDLLDWK 248

[Close]

BLAST of Carg04935 vs. NCBI nr
Match: XP_038883395.1 (F-box protein At5g39250 isoform X2 [Benincasa hispida] >XP_038883403.1 F-box protein At5g39250 isoform X2 [Benincasa hispida] >XP_038883411.1 F-box protein At5g39250 isoform X2 [Benincasa hispida] >XP_038883415.1 F-box protein At5g39250 isoform X2 [Benincasa hispida])

HSP 1 Score: 478.4 bits (1230), Expect = 3.7e-131
Identity = 224/249 (89.96%), Postives = 241/249 (96.79%), Query Frame = 0


Query: 1   MRWEEILKVIFPLLEGVDLASCMLVCKQWRDIARDDFFWKCLCAKKWPSTCKNPDPPTNT 60
           M WEE+LKVIFPLLEGVDLASCM VCKQWRDIA+DD+FWKCLCAK+WPSTCK P+PPT+T
Sbjct: 1   MIWEEVLKVIFPLLEGVDLASCMAVCKQWRDIAQDDYFWKCLCAKRWPSTCKTPNPPTDT 60

Query: 61  YYKLYQNFYKRPNNRRLLPPRLSFDDLEFFIDIWSEDRLIFSEVVAGQVLQSGMK-PPPG 120
           YY+LY+NFYKRPNNRRLLPPRLSFD LEFFIDIWSEDRLIFSEVV+GQVLQ+GMK PPPG
Sbjct: 61  YYELYRNFYKRPNNRRLLPPRLSFDVLEFFIDIWSEDRLIFSEVVSGQVLQNGMKNPPPG 120

Query: 121 TSNVINYHLEAPEFKMTLPVQPRFSIPISHTVSVSVLVGRKDSNKVARIVNKSVFDYIDR 180
           T NV++YHLE PEFKMTLPV+PRFSIPISH+VSVSVLVGRKDSNKVARIVNKSVFDYIDR
Sbjct: 121 TINVLSYHLEVPEFKMTLPVEPRFSIPISHSVSVSVLVGRKDSNKVARIVNKSVFDYIDR 180

Query: 181 TSYRTLAFDYLDFSPLYPFVSGIRAWISLLFLDDGNDGIIDVFGIVMDFCDAANTKDEVL 240
           TSYR LAFDYLDFSPL+PFVSGIRAWISLLF+DDGNDG+IDVFGIVMDFCDAANTKDEVL
Sbjct: 181 TSYRALAFDYLDFSPLHPFVSGIRAWISLLFMDDGNDGVIDVFGIVMDFCDAANTKDEVL 240

Query: 241 WLLDLLDWK 249
           WLLDLLDWK
Sbjct: 241 WLLDLLDWK 249

[Close]

BLAST of Carg04935 vs. NCBI nr
Match: XP_038883374.1 (F-box protein At5g39250 isoform X1 [Benincasa hispida] >XP_038883382.1 F-box protein At5g39250 isoform X1 [Benincasa hispida])

HSP 1 Score: 478.4 bits (1230), Expect = 3.7e-131
Identity = 224/249 (89.96%), Postives = 241/249 (96.79%), Query Frame = 0


Query: 1   MRWEEILKVIFPLLEGVDLASCMLVCKQWRDIARDDFFWKCLCAKKWPSTCKNPDPPTNT 60
           M WEE+LKVIFPLLEGVDLASCM VCKQWRDIA+DD+FWKCLCAK+WPSTCK P+PPT+T
Sbjct: 19  MIWEEVLKVIFPLLEGVDLASCMAVCKQWRDIAQDDYFWKCLCAKRWPSTCKTPNPPTDT 78

Query: 61  YYKLYQNFYKRPNNRRLLPPRLSFDDLEFFIDIWSEDRLIFSEVVAGQVLQSGMK-PPPG 120
           YY+LY+NFYKRPNNRRLLPPRLSFD LEFFIDIWSEDRLIFSEVV+GQVLQ+GMK PPPG
Sbjct: 79  YYELYRNFYKRPNNRRLLPPRLSFDVLEFFIDIWSEDRLIFSEVVSGQVLQNGMKNPPPG 138

Query: 121 TSNVINYHLEAPEFKMTLPVQPRFSIPISHTVSVSVLVGRKDSNKVARIVNKSVFDYIDR 180
           T NV++YHLE PEFKMTLPV+PRFSIPISH+VSVSVLVGRKDSNKVARIVNKSVFDYIDR
Sbjct: 139 TINVLSYHLEVPEFKMTLPVEPRFSIPISHSVSVSVLVGRKDSNKVARIVNKSVFDYIDR 198

Query: 181 TSYRTLAFDYLDFSPLYPFVSGIRAWISLLFLDDGNDGIIDVFGIVMDFCDAANTKDEVL 240
           TSYR LAFDYLDFSPL+PFVSGIRAWISLLF+DDGNDG+IDVFGIVMDFCDAANTKDEVL
Sbjct: 199 TSYRALAFDYLDFSPLHPFVSGIRAWISLLFMDDGNDGVIDVFGIVMDFCDAANTKDEVL 258

Query: 241 WLLDLLDWK 249
           WLLDLLDWK
Sbjct: 259 WLLDLLDWK 267

[Close]

BLAST of Carg04935 vs. ExPASy Swiss-Prot
Match: Q9FL82 (F-box protein At5g39250 OS=Arabidopsis thaliana OX=3702 GN=At5g39250 PE=2 SV=1)

HSP 1 Score: 361.3 bits (926), Expect = 8.7e-99
Identity = 169/249 (67.87%), Postives = 206/249 (82.73%), Query Frame = 0


Query: 4   EEILKVIFPLLEGVDLASCMLVCKQWRDIARDDFFWKCLCAKKWPSTCKNPDPPTNTYYK 63
           EE+LK +FPLLEG DLASCM VCKQWRDIARDDF+WKC CAKKWPS CK   PPT TYYK
Sbjct: 4   EEVLKNVFPLLEGEDLASCMGVCKQWRDIARDDFYWKCQCAKKWPSVCKRHKPPTETYYK 63

Query: 64  LYQNFYKRPNNRRLLPPRLSFDDLEFFIDIWSEDRLIFSEVVAGQVLQSGMKP-PPGTSN 123
           +YQ F KR  NR L PPRLSF++LEFFIDIWSE+RL+FS ++ G  L++G++  P G SN
Sbjct: 64  MYQTFSKRRLNRALPPPRLSFENLEFFIDIWSEERLVFSGLIPGVALENGIETLPLGISN 123

Query: 124 VINYHLEAPEFKMTLPVQPRFSIPISHTVSVSVLVGRKDSNKVARIVNKSVFDYIDRTSY 183
           V+  HL  P++KM +P +PRF+IP++ +VSVSVLV R DS+KVARI+N+SVFDYIDR+SY
Sbjct: 124 VLRTHLGRPDYKMVVPAEPRFTIPLNQSVSVSVLVARNDSDKVARIINRSVFDYIDRSSY 183

Query: 184 RTLAFDYLDFSPLYPFVSGIRAWISLLFL---DDGNDGIIDVFGIVMDFCDAANTKDEVL 243
           R LAF+YLD SP YPF+SGIRAWISLLF+   D  +DG++DVFGI +DF D A+TK+EVL
Sbjct: 184 RALAFEYLDLSPCYPFISGIRAWISLLFMDVEDMNDDGLLDVFGIQLDFNDVADTKEEVL 243

Query: 244 WLLDLLDWK 249
           WLLD+LDWK
Sbjct: 244 WLLDMLDWK 252

[Close]

BLAST of Carg04935 vs. ExPASy TrEMBL
Match: A0A6J1H6B9 (F-box protein At5g39250 OS=Cucurbita moschata OX=3662 GN=LOC111460859 PE=4 SV=1)

HSP 1 Score: 521.5 bits (1342), Expect = 1.9e-144
Identity = 248/248 (100.00%), Postives = 248/248 (100.00%), Query Frame = 0


Query: 1   MRWEEILKVIFPLLEGVDLASCMLVCKQWRDIARDDFFWKCLCAKKWPSTCKNPDPPTNT 60
           MRWEEILKVIFPLLEGVDLASCMLVCKQWRDIARDDFFWKCLCAKKWPSTCKNPDPPTNT
Sbjct: 1   MRWEEILKVIFPLLEGVDLASCMLVCKQWRDIARDDFFWKCLCAKKWPSTCKNPDPPTNT 60

Query: 61  YYKLYQNFYKRPNNRRLLPPRLSFDDLEFFIDIWSEDRLIFSEVVAGQVLQSGMKPPPGT 120
           YYKLYQNFYKRPNNRRLLPPRLSFDDLEFFIDIWSEDRLIFSEVVAGQVLQSGMKPPPGT
Sbjct: 61  YYKLYQNFYKRPNNRRLLPPRLSFDDLEFFIDIWSEDRLIFSEVVAGQVLQSGMKPPPGT 120

Query: 121 SNVINYHLEAPEFKMTLPVQPRFSIPISHTVSVSVLVGRKDSNKVARIVNKSVFDYIDRT 180
           SNVINYHLEAPEFKMTLPVQPRFSIPISHTVSVSVLVGRKDSNKVARIVNKSVFDYIDRT
Sbjct: 121 SNVINYHLEAPEFKMTLPVQPRFSIPISHTVSVSVLVGRKDSNKVARIVNKSVFDYIDRT 180

Query: 181 SYRTLAFDYLDFSPLYPFVSGIRAWISLLFLDDGNDGIIDVFGIVMDFCDAANTKDEVLW 240
           SYRTLAFDYLDFSPLYPFVSGIRAWISLLFLDDGNDGIIDVFGIVMDFCDAANTKDEVLW
Sbjct: 181 SYRTLAFDYLDFSPLYPFVSGIRAWISLLFLDDGNDGIIDVFGIVMDFCDAANTKDEVLW 240

Query: 241 LLDLLDWK 249
           LLDLLDWK
Sbjct: 241 LLDLLDWK 248

[Close]

BLAST of Carg04935 vs. ExPASy TrEMBL
Match: A0A6J1KTX3 (F-box protein At5g39250-like OS=Cucurbita maxima OX=3661 GN=LOC111498169 PE=4 SV=1)

HSP 1 Score: 519.6 bits (1337), Expect = 7.1e-144
Identity = 247/248 (99.60%), Postives = 247/248 (99.60%), Query Frame = 0


Query: 1   MRWEEILKVIFPLLEGVDLASCMLVCKQWRDIARDDFFWKCLCAKKWPSTCKNPDPPTNT 60
           MRWEEILKVIFPLLEGVDLASCM VCKQWRDIARDDFFWKCLCAKKWPSTCKNPDPPTNT
Sbjct: 1   MRWEEILKVIFPLLEGVDLASCMAVCKQWRDIARDDFFWKCLCAKKWPSTCKNPDPPTNT 60

Query: 61  YYKLYQNFYKRPNNRRLLPPRLSFDDLEFFIDIWSEDRLIFSEVVAGQVLQSGMKPPPGT 120
           YYKLYQNFYKRPNNRRLLPPRLSFDDLEFFIDIWSEDRLIFSEVVAGQVLQSGMKPPPGT
Sbjct: 61  YYKLYQNFYKRPNNRRLLPPRLSFDDLEFFIDIWSEDRLIFSEVVAGQVLQSGMKPPPGT 120

Query: 121 SNVINYHLEAPEFKMTLPVQPRFSIPISHTVSVSVLVGRKDSNKVARIVNKSVFDYIDRT 180
           SNVINYHLEAPEFKMTLPVQPRFSIPISHTVSVSVLVGRKDSNKVARIVNKSVFDYIDRT
Sbjct: 121 SNVINYHLEAPEFKMTLPVQPRFSIPISHTVSVSVLVGRKDSNKVARIVNKSVFDYIDRT 180

Query: 181 SYRTLAFDYLDFSPLYPFVSGIRAWISLLFLDDGNDGIIDVFGIVMDFCDAANTKDEVLW 240
           SYRTLAFDYLDFSPLYPFVSGIRAWISLLFLDDGNDGIIDVFGIVMDFCDAANTKDEVLW
Sbjct: 181 SYRTLAFDYLDFSPLYPFVSGIRAWISLLFLDDGNDGIIDVFGIVMDFCDAANTKDEVLW 240

Query: 241 LLDLLDWK 249
           LLDLLDWK
Sbjct: 241 LLDLLDWK 248

[Close]

BLAST of Carg04935 vs. ExPASy TrEMBL
Match: A0A1S3BL55 (F-box protein At5g39250 OS=Cucumis melo OX=3656 GN=LOC103490854 PE=4 SV=1)

HSP 1 Score: 475.7 bits (1223), Expect = 1.2e-130
Identity = 223/249 (89.56%), Postives = 237/249 (95.18%), Query Frame = 0


Query: 1   MRWEEILKVIFPLLEGVDLASCMLVCKQWRDIARDDFFWKCLCAKKWPSTCKNPDPPTNT 60
           M WEE+LKVIFPLLEGVDLASCM VCKQWRDIARDD+FWKCLCAKKWPSTCK   PPT+T
Sbjct: 1   MTWEEVLKVIFPLLEGVDLASCMAVCKQWRDIARDDYFWKCLCAKKWPSTCKTSHPPTDT 60

Query: 61  YYKLYQNFYKRPNNRRLLPPRLSFDDLEFFIDIWSEDRLIFSEVVAGQVLQSGMK-PPPG 120
           YYKLY+NFYKRPNNRRLLPPRLSFDDLEFFIDIWSEDRLIFSE V+G++LQ+GMK PPPG
Sbjct: 61  YYKLYRNFYKRPNNRRLLPPRLSFDDLEFFIDIWSEDRLIFSEAVSGRILQNGMKSPPPG 120

Query: 121 TSNVINYHLEAPEFKMTLPVQPRFSIPISHTVSVSVLVGRKDSNKVARIVNKSVFDYIDR 180
           TSNV++YHLE PEFKMTLPV+PRFSIPIS+ VS SVLVGRKDSNKVARIVNKSVFDYIDR
Sbjct: 121 TSNVLSYHLEVPEFKMTLPVEPRFSIPISNAVSASVLVGRKDSNKVARIVNKSVFDYIDR 180

Query: 181 TSYRTLAFDYLDFSPLYPFVSGIRAWISLLFLDDGNDGIIDVFGIVMDFCDAANTKDEVL 240
           TSYR LAFDYLDFSPL+PFVSGIRAWISLLF+DDGNDG IDVFGIVMDFCDAANTKDEVL
Sbjct: 181 TSYRALAFDYLDFSPLHPFVSGIRAWISLLFMDDGNDGAIDVFGIVMDFCDAANTKDEVL 240

Query: 241 WLLDLLDWK 249
           WLLDLLDWK
Sbjct: 241 WLLDLLDWK 249

[Close]

BLAST of Carg04935 vs. ExPASy TrEMBL
Match: A0A5A7TI25 (F-box protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold1017G00800 PE=4 SV=1)

HSP 1 Score: 475.7 bits (1223), Expect = 1.2e-130
Identity = 223/249 (89.56%), Postives = 237/249 (95.18%), Query Frame = 0


Query: 1   MRWEEILKVIFPLLEGVDLASCMLVCKQWRDIARDDFFWKCLCAKKWPSTCKNPDPPTNT 60
           M WEE+LKVIFPLLEGVDLASCM VCKQWRDIARDD+FWKCLCAKKWPSTCK   PPT+T
Sbjct: 1   MTWEEVLKVIFPLLEGVDLASCMAVCKQWRDIARDDYFWKCLCAKKWPSTCKTSHPPTDT 60

Query: 61  YYKLYQNFYKRPNNRRLLPPRLSFDDLEFFIDIWSEDRLIFSEVVAGQVLQSGMK-PPPG 120
           YYKLY+NFYKRPNNRRLLPPRLSFDDLEFFIDIWSEDRLIFSE V+G++LQ+GMK PPPG
Sbjct: 61  YYKLYRNFYKRPNNRRLLPPRLSFDDLEFFIDIWSEDRLIFSEAVSGRILQNGMKSPPPG 120

Query: 121 TSNVINYHLEAPEFKMTLPVQPRFSIPISHTVSVSVLVGRKDSNKVARIVNKSVFDYIDR 180
           TSNV++YHLE PEFKMTLPV+PRFSIPIS+ VS SVLVGRKDSNKVARIVNKSVFDYIDR
Sbjct: 121 TSNVLSYHLEVPEFKMTLPVEPRFSIPISNAVSASVLVGRKDSNKVARIVNKSVFDYIDR 180

Query: 181 TSYRTLAFDYLDFSPLYPFVSGIRAWISLLFLDDGNDGIIDVFGIVMDFCDAANTKDEVL 240
           TSYR LAFDYLDFSPL+PFVSGIRAWISLLF+DDGNDG IDVFGIVMDFCDAANTKDEVL
Sbjct: 181 TSYRALAFDYLDFSPLHPFVSGIRAWISLLFMDDGNDGAIDVFGIVMDFCDAANTKDEVL 240

Query: 241 WLLDLLDWK 249
           WLLDLLDWK
Sbjct: 241 WLLDLLDWK 249

[Close]

BLAST of Carg04935 vs. ExPASy TrEMBL
Match: A0A0A0L6S1 (F-box domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_3G017250 PE=4 SV=1)

HSP 1 Score: 463.8 bits (1192), Expect = 4.6e-127
Identity = 218/249 (87.55%), Postives = 233/249 (93.57%), Query Frame = 0


Query: 1   MRWEEILKVIFPLLEGVDLASCMLVCKQWRDIARDDFFWKCLCAKKWPSTCKNPDPPTNT 60
           M WEEILKVIFPLLEGVDLASCM VCKQWRDIA+DD+FWKCLCAKKWPSTCK   PPT+T
Sbjct: 1   MTWEEILKVIFPLLEGVDLASCMAVCKQWRDIAQDDYFWKCLCAKKWPSTCKTSHPPTDT 60

Query: 61  YYKLYQNFYKRPNNRRLLPPRLSFDDLEFFIDIWSEDRLIFSEVVAGQVLQSGMK-PPPG 120
           YYKLY+NFYKRPNNRRLLPPRLSFDDLEFFIDIWSEDRLIFSEVV+G + Q+GMK PPP 
Sbjct: 61  YYKLYRNFYKRPNNRRLLPPRLSFDDLEFFIDIWSEDRLIFSEVVSGGIFQNGMKNPPPS 120

Query: 121 TSNVINYHLEAPEFKMTLPVQPRFSIPISHTVSVSVLVGRKDSNKVARIVNKSVFDYIDR 180
           T N+++YHLE PEFKMTL V+PRFSIPIS+TVS SVLVGRKDSNKVARIVNKSVFDYIDR
Sbjct: 121 TGNLLSYHLEVPEFKMTLTVEPRFSIPISNTVSASVLVGRKDSNKVARIVNKSVFDYIDR 180

Query: 181 TSYRTLAFDYLDFSPLYPFVSGIRAWISLLFLDDGNDGIIDVFGIVMDFCDAANTKDEVL 240
           TSYR LAFDYLDFSP +PFVSGIRAWISLLF+DDG+DG IDVFGIVMDFCDAANTKDEVL
Sbjct: 181 TSYRALAFDYLDFSPFHPFVSGIRAWISLLFMDDGDDGAIDVFGIVMDFCDAANTKDEVL 240

Query: 241 WLLDLLDWK 249
           WLLDLLDWK
Sbjct: 241 WLLDLLDWK 249

[Close]

BLAST of Carg04935 vs. TAIR 10
Match: AT5G39250.1 (F-box family protein )

HSP 1 Score: 361.3 bits (926), Expect = 6.2e-100
Identity = 169/249 (67.87%), Postives = 206/249 (82.73%), Query Frame = 0


Query: 4   EEILKVIFPLLEGVDLASCMLVCKQWRDIARDDFFWKCLCAKKWPSTCKNPDPPTNTYYK 63
           EE+LK +FPLLEG DLASCM VCKQWRDIARDDF+WKC CAKKWPS CK   PPT TYYK
Sbjct: 4   EEVLKNVFPLLEGEDLASCMGVCKQWRDIARDDFYWKCQCAKKWPSVCKRHKPPTETYYK 63

Query: 64  LYQNFYKRPNNRRLLPPRLSFDDLEFFIDIWSEDRLIFSEVVAGQVLQSGMKP-PPGTSN 123
           +YQ F KR  NR L PPRLSF++LEFFIDIWSE+RL+FS ++ G  L++G++  P G SN
Sbjct: 64  MYQTFSKRRLNRALPPPRLSFENLEFFIDIWSEERLVFSGLIPGVALENGIETLPLGISN 123

Query: 124 VINYHLEAPEFKMTLPVQPRFSIPISHTVSVSVLVGRKDSNKVARIVNKSVFDYIDRTSY 183
           V+  HL  P++KM +P +PRF+IP++ +VSVSVLV R DS+KVARI+N+SVFDYIDR+SY
Sbjct: 124 VLRTHLGRPDYKMVVPAEPRFTIPLNQSVSVSVLVARNDSDKVARIINRSVFDYIDRSSY 183

Query: 184 RTLAFDYLDFSPLYPFVSGIRAWISLLFL---DDGNDGIIDVFGIVMDFCDAANTKDEVL 243
           R LAF+YLD SP YPF+SGIRAWISLLF+   D  +DG++DVFGI +DF D A+TK+EVL
Sbjct: 184 RALAFEYLDLSPCYPFISGIRAWISLLFMDVEDMNDDGLLDVFGIQLDFNDVADTKEEVL 243

Query: 244 WLLDLLDWK 249
           WLLD+LDWK
Sbjct: 244 WLLDMLDWK 252

The following BLAST results are available for this feature:

BLAST of Carg04935 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022959961.1	3.8e-144	100.00	F-box protein At5g39250 [Cucurbita moschata] >XP_022959962.1 F-box protein At5g3...	[more]
XP_023005069.1	1.5e-143	99.60	F-box protein At5g39250-like [Cucurbita maxima] >XP_023005070.1 F-box protein At...	[more]
XP_023513418.1	3.3e-143	99.60	F-box protein At5g39250-like [Cucurbita pepo subsp. pepo] >XP_023513419.1 F-box ...	[more]
XP_038883395.1	3.7e-131	89.96	F-box protein At5g39250 isoform X2 [Benincasa hispida] >XP_038883403.1 F-box pro...	[more]
XP_038883374.1	3.7e-131	89.96	F-box protein At5g39250 isoform X1 [Benincasa hispida] >XP_038883382.1 F-box pro...	[more]

BLAST of Carg04935 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9FL82	8.7e-99	67.87	F-box protein At5g39250 OS=Arabidopsis thaliana OX=3702 GN=At5g39250 PE=2 SV=1	[more]

BLAST of Carg04935 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1H6B9	1.9e-144	100.00	F-box protein At5g39250 OS=Cucurbita moschata OX=3662 GN=LOC111460859 PE=4 SV=1	[more]
A0A6J1KTX3	7.1e-144	99.60	F-box protein At5g39250-like OS=Cucurbita maxima OX=3661 GN=LOC111498169 PE=4 SV...	[more]
A0A1S3BL55	1.2e-130	89.56	F-box protein At5g39250 OS=Cucumis melo OX=3656 GN=LOC103490854 PE=4 SV=1	[more]
A0A5A7TI25	1.2e-130	89.56	F-box protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold1017G00800...	[more]
A0A0A0L6S1	4.6e-127	87.55	F-box domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_3G017250 PE=4 ...	[more]

BLAST of Carg04935 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G39250.1	6.2e-100	67.87	F-box family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Silver-seed gourd (SMH-JMG-627) v2
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001810	F-box domain	PFAM	PF12937	F-box-like	coord: 5..43 e-value: 1.1E-10 score: 41.2
IPR001810	F-box domain	PROSITE	PS50181	FBOX	coord: 1..42 score: 8.702637
None	No IPR available	GENE3D	1.20.1280.50		coord: 3..75 e-value: 6.3E-11 score: 44.1
IPR044207	F-box protein At5g39250-like	PANTHER	PTHR47722	EXPRESSED PROTEIN	coord: 2..248
IPR036047	F-box-like domain superfamily	SUPERFAMILY	81383	F-box domain	coord: 4..70

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Carg04935-RA	Carg04935-RA	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
molecular_function	GO:0005515	protein binding