Carg04925 (gene) Silver-seed gourd (SMH-JMG-627) v2

Overview


Name	Carg04925
Type	gene
Organism	Cucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
Description	protein PRD1
Location	Carg_Chr08: 516070 .. 519442 (+)
RNA-Seq Expression	Carg04925
Synteny	Carg04925

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGCGTAAGTCTCACAACACGATCATCCATCCCAAAATAAACAAACAAACAAACAATAGGAAAAAACGATCAGAACCGAAGATGCCAGATAAATGACAAACAACAATAACAAAACGAGGGAGGGTGGGTGTACCATTTCGAATGGATTATTGCAATTGCCAGACTTGGGAGCGGGGACATCCTCGGCGAAGACACACGATATACCGAAGAGAAAAAGGATAAACAGGATTGAAAAGAGATGGATATTTGGACATCTCGCCGGAGAAGAAGAGAACGCCATGTGAGTCCCCGTATTCCCTCGGATTCAGATGGTAAAACGGGTGGGAGGGGAAGAGGGAAGAATGCAACGGATGGCGTTTTCTTCCCCTGTTTCTTTTACCCGTTTGAACAGAGCAAATTTCCAGCTTAAAAACGGAATTACAAAATTGGGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTAAATTTTAAAAATTAAATTATTAAAACAATCAAATTATAATTGATAAAAATAGGGTACCATTGGTAAATAGCATAGACCCAGTTACCTTAAATTGTGTACGGTGCACATAATTTCCTCAAAATAGCTCGTTAAAACAATATTATTATTTTATTCTTGGTATTTTATTTCAATTATATATTCGAAGTTTTTAAATTTTAATTAATTAATATTCCTAATATCTTTTAACTTTTAATAAATTAAAAAAAAATAAATAAAAGTCTTTTGCCGTACATTGTGGGAGGTATAAATAGAAAAAGTTCACCATTTGCGCGCCAAAATTTCGAAAAGCCCCGCCATCTCTCGAAGAGATTACCAGAAGTGTTCTTCGGCGAGGGAAACATCCAGACCCCGAATCAGCACAGGAAGAACAGGATCGATCCATTCTTCCATGATCATGCTTCCATGGCGACCTTTCATCGCTTTGCCTTCACACACAGGAAGGAGGAAGTAGGAACGATTTGCCTTCTCTGCTTCTCCAACCTCATCTCCGATCCCTTCTCTTCCAGTTCTCTCGGGCTTTTTTCTCAGCTTCCATTACTCCGCACCTTCCTCACTTTCCACTCTCACTTTATCGTCCCTTCCTTCATCGCCGTGCTCTTCTCCTACGACGATGATCCCATTGCTTGCCAAGTCACCGGTCTTGTTCACAAGCTCTGTGATGTGACTGAAGCTGACGGTGATGGATCCATTTGCGATAATTTCATTGCCGGAGTTTTGGATCGGCTTTCTTATGCCGTGTTGGCGTGGAGTCCTCGCCAAGTGTATATGGTAATGGTTTCTGTGTATGTTCTGTATTTTCGTTGTCGAAAGAGTGATGGATTTTTATTATTTCCTTGTAGCTTCATTGTTATGGAATGCTTTTAAATTATCGGACAAAAAAATTCCATGACCTAATTAAGAACAACGATGTACTCGTATGAAATCTCGTGAGGGAAATCATCTTGCATTATGCATAGGTATTTATGACAAGTTCCGAATCCATCTTCACATGCAACGAGGAGATATGTGGAGAGGTCCTCTATGTTCTGTACAAATTGTCCACAATTCAAATTTACTTTTTAGTTTTTCCAACTTCTGGTCTTATACTCAGTAATACAGTATTTGACTTATTAATTGAATTATAAATTTATAAAGTTCTAACATAAACGTAGTCCCTTCAATCTTGCAGGTACCAAATGTACGATAAAGAATGATGGGGGTACTCAAACAGACTAAGAAATCGAAAATGTGTTTGTTGACGATCAAGGAGAAATTTGTGAGTATCTTATTCACTTGATTCAATCAGATGCACACAAGAATGAAAGATTATCTAACGAAATAGAGTTGTTTTTTTAGGGCTTTAGCAGAAAAAGATACCAACTAATCTTTTACCTGTACTACCCATTGATTCAAGTGAAGTAATAACCATTAAAGGTACATCAAATTTACAACAAACAAAACATATAAAACTCCCCACTGTAAAGCTCTCCTGGTTGTCAATGGCCATCAAATCCCTACAAAAAATTGATACAGGCACATGCATACCAAGCTATTTTATCTGGTTTTCAGTCCCATTCCCCCCTGGTTTTCATAAACTAGATCAATGAGTTCTTCATAAGTCCAAACTTTACTTTCCCTACCCACAAGTTCCAGGGAAGCGTATGCCTCTTCACAGTCTTTAAGGAACCTCCCTTTTCCAAATGCAGCTAAAACAAGCGAGTCGGTGTTTATTTCCACAGCTCTGGATAGCAAGTTCATCCTTTTCCATGCCTCTAAAATTCTGGTTCCATCAAAACTTTTGTTATTTGCATCTAATAGAATTCCAATGGTTACTATATCAGGTTTCACATGTCTTGCTCGTATTTCAGAGAACAGTGTTCTGAGCCGTTTAAAATCTTTCATTTTCAAATAAGCTAGAAGTAAAATGTTTGCAACAGTCGCATTCCAAATTTCGTTAGCTTTGTCCATTTCCTGAACAACAGAGTCCATACCCCTTCGACTTGATAGACAAGCATGTGATAGAAGAAGCAGGCACCAAACAAGATCTGTCTTCCCAGCTTTGATGTGAAGATCGATACCCAAGGTCTCTATTCTTGAATACATATGGTTCTGAATATAAACTAGAGCCAACGTTCTGATTAGATCCTCCTTCATATTGGTCTTTGAGTTCAGGATCCTTCTGTAGAACATTTCCATTTTGTCCAAGATACCAAATTTGGCATAAGCTTCCAACATGGCAACCAAGGTAGATGACTGTAAATCCATTCTTTTTGAAAGAATGCTTCGGTATAATCCTTCCATCTTTTTAAGCAAACCACCTTTGGAGAACTCTCTGATAAGCAAATTGTAAGTTATGTGGTCCGGAATACATCCATCCAGTTCCATCTGTTTCAGACACTCGATCATCTCATCGTACATTCTATATTTTCCATAGGCTTCAATTAGGCCATCATAGGTATCAGCTTCTCGAGTCATATTGATTTCTTTCATCTCATCAATGAAAAGCAAAGCAATTTCAAACTTGCCCCTTGCAGCAAAACCATGGATGAGCGAATTGTAAGTACCTAAAGATGGTCGAAGGCCAATACTTTTCATATCTTGAAATGATGATACAGCATCCTCCATAAGACCATCTTGACTCAATAGAACTATTACTTTCTCATAGTTACTTTCATTGATCCGCGATCCCTCAATGCTCTTCCATGTATCAAATAGCTGCACAAAGTTTCAAAATTTCATTGGTCACAGGCACTAGAACTTGCAAAAGCACTTGGATCCAAGCCATTATATAGATCTTAAATGGTACTCAATAATCAATCCCTGTAGCATCCCGGAAAAGACCGAAGAAAATATATTGTTATTTGAAAAAAGAAATAGGATATAAGAATCT

mRNA sequence

ATGCACTTGGGAGCGGGGACATCCTCGGCGAAGACACACGATATACCGAAGAGAAAAAGGATAAACAGGATTGAAAAGAGATGGATATTTGGACATCTCGCCGGAGAAGAAGAGAACGCCATAAAAAGTTCACCATTTGCGCGCCAAAATTTCGAAAAGCCCCGCCATCTCTCGAAGAGATTACCAGAAGTGTTCTTCGGCGAGGGAAACATCCAGACCCCGAATCAGCACAGGAAGAACAGGATCGATCCATTCTTCCATGATCATGCTTCCATGGCGACCTTTCATCGCTTTGCCTTCACACACAGGAAGGAGGAAGTAGGAACGATTTGCCTTCTCTGCTTCTCCAACCTCATCTCCGATCCCTTCTCTTCCAGTTCTCTCGGGCTTTTTTCTCAGCTTCCATTACTCCGCACCTTCCTCACTTTCCACTCTCACTTTATCGTCCCTTCCTTCATCGCCGTGCTCTTCTCCTACGACGATGATCCCATTGCTTGCCAAGTCACCGGTCTTGTTCACAAGCTCTGTGATGTGACTGAAGCTGACGGTGATGGATCCATTTGCGATAATTTCATTGCCGGAGTTTTGGATCGGCTTTCTTATGCCGTGTTGGCGTGGAGTCCTCGCCAAGTGTATATGGTACCAAATGTACGATAAAGAATGATGGGGGTACTCAAACAGACTAAGAAATCGAAAATGTGTTTGTTGACGATCAAGGAGAAATTTGTGAGTATCTTATTCACTTGATTCAATCAGATGCACACAAGAATGAAAGATTATCTAACGAAATAGAGTTGTTTTTTTAGGGCTTTAGCAGAAAAAGATACCAACTAATCTTTTACCTGTACTACCCATTGATTCAAGTGAAGTAATAACCATTAAAGGTACATCAAATTTACAACAAACAAAACATATAAAACTCCCCACTGTAAAGCTCTCCTGGTTGTCAATGGCCATCAAATCCCTACAAAAAATTGATACAGGCACATGCATACCAAGCTATTTTATCTGGTTTTCAGTCCCATTCCCCCCTGGTTTTCATAAACTAGATCAATGAGTTCTTCATAAGTCCAAACTTTACTTTCCCTACCCACAAGTTCCAGGGAAGCGTATGCCTCTTCACAGTCTTTAAGGAACCTCCCTTTTCCAAATGCAGCTAAAACAAGCGAGTCGGTGTTTATTTCCACAGCTCTGGATAGCAAGTTCATCCTTTTCCATGCCTCTAAAATTCTGGTTCCATCAAAACTTTTGTTATTTGCATCTAATAGAATTCCAATGGTTACTATATCAGGTTTCACATGTCTTGCTCGTATTTCAGAGAACAGTGTTCTGAGCCGTTTAAAATCTTTCATTTTCAAATAAGCTAGAAGTAAAATGTTTGCAACAGTCGCATTCCAAATTTCGTTAGCTTTGTCCATTTCCTGAACAACAGAGTCCATACCCCTTCGACTTGATAGACAAGCATGTGATAGAAGAAGCAGGCACCAAACAAGATCTGTCTTCCCAGCTTTGATGTGAAGATCGATACCCAAGGTCTCTATTCTTGAATACATATGGTTCTGAATATAAACTAGAGCCAACGTTCTGATTAGATCCTCCTTCATATTGGTCTTTGAGTTCAGGATCCTTCTGTAGAACATTTCCATTTTGTCCAAGATACCAAATTTGGCATAAGCTTCCAACATGGCAACCAAGGTAGATGACTGTAAATCCATTCTTTTTGAAAGAATGCTTCGGTATAATCCTTCCATCTTTTTAAGCAAACCACCTTTGGAGAACTCTCTGATAAGCAAATTGTAAGTTATGTGGTCCGGAATACATCCATCCAGTTCCATCTGTTTCAGACACTCGATCATCTCATCGTACATTCTATATTTTCCATAGGCTTCAATTAGGCCATCATAGGTATCAGCTTCTCGAGTCATATTGATTTCTTTCATCTCATCAATGAAAAGCAAAGCAATTTCAAACTTGCCCCTTGCAGCAAAACCATGGATGAGCGAATTGTAAGTACCTAAAGATGGTCGAAGGCCAATACTTTTCATATCTTGAAATGATGATACAGCATCCTCCATAAGACCATCTTGACTCAATAGAACTATTACTTTCTCATAGTTACTTTCATTGATCCGCGATCCCTCAATGCTCTTCCATGTATCAAATAGCTGCACAAAGTTTCAAAATTTCATTGGTCACAGGCACTAGAACTTGCAAAAGCACTTGGATCCAAGCCATTATATAGATCTTAAATGGTACTCAATAATCAATCCCTGTAGCATCCCGGAAAAGACCGAAGAAAATATATTGTTATTTGAAAAAAGAAATAGGATATAAGAATCT

Coding sequence (CDS)

ATGCACTTGGGAGCGGGGACATCCTCGGCGAAGACACACGATATACCGAAGAGAAAAAGGATAAACAGGATTGAAAAGAGATGGATATTTGGACATCTCGCCGGAGAAGAAGAGAACGCCATAAAAAGTTCACCATTTGCGCGCCAAAATTTCGAAAAGCCCCGCCATCTCTCGAAGAGATTACCAGAAGTGTTCTTCGGCGAGGGAAACATCCAGACCCCGAATCAGCACAGGAAGAACAGGATCGATCCATTCTTCCATGATCATGCTTCCATGGCGACCTTTCATCGCTTTGCCTTCACACACAGGAAGGAGGAAGTAGGAACGATTTGCCTTCTCTGCTTCTCCAACCTCATCTCCGATCCCTTCTCTTCCAGTTCTCTCGGGCTTTTTTCTCAGCTTCCATTACTCCGCACCTTCCTCACTTTCCACTCTCACTTTATCGTCCCTTCCTTCATCGCCGTGCTCTTCTCCTACGACGATGATCCCATTGCTTGCCAAGTCACCGGTCTTGTTCACAAGCTCTGTGATGTGACTGAAGCTGACGGTGATGGATCCATTTGCGATAATTTCATTGCCGGAGTTTTGGATCGGCTTTCTTATGCCGTGTTGGCGTGGAGTCCTCGCCAAGTGTATATGGTACCAAATGTACGATAA

Protein sequence

MHLGAGTSSAKTHDIPKRKRINRIEKRWIFGHLAGEEENAIKSSPFARQNFEKPRHLSKRLPEVFFGEGNIQTPNQHRKNRIDPFFHDHASMATFHRFAFTHRKEEVGTICLLCFSNLISDPFSSSSLGLFSQLPLLRTFLTFHSHFIVPSFIAVLFSYDDDPIACQVTGLVHKLCDVTEADGDGSICDNFIAGVLDRLSYAVLAWSPRQVYMVPNVR

Homology

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BLAST of Carg04925 vs. NCBI nr
Match: KAG7025297.1 (Protein PRD1, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 452.2 bits (1162), Expect = 2.5e-123
Identity = 218/218 (100.00%), Postives = 218/218 (100.00%), Query Frame = 0


Query: 1   MHLGAGTSSAKTHDIPKRKRINRIEKRWIFGHLAGEEENAIKSSPFARQNFEKPRHLSKR 60
           MHLGAGTSSAKTHDIPKRKRINRIEKRWIFGHLAGEEENAIKSSPFARQNFEKPRHLSKR
Sbjct: 1   MHLGAGTSSAKTHDIPKRKRINRIEKRWIFGHLAGEEENAIKSSPFARQNFEKPRHLSKR 60

Query: 61  LPEVFFGEGNIQTPNQHRKNRIDPFFHDHASMATFHRFAFTHRKEEVGTICLLCFSNLIS 120
           LPEVFFGEGNIQTPNQHRKNRIDPFFHDHASMATFHRFAFTHRKEEVGTICLLCFSNLIS
Sbjct: 61  LPEVFFGEGNIQTPNQHRKNRIDPFFHDHASMATFHRFAFTHRKEEVGTICLLCFSNLIS 120

Query: 121 DPFSSSSLGLFSQLPLLRTFLTFHSHFIVPSFIAVLFSYDDDPIACQVTGLVHKLCDVTE 180
           DPFSSSSLGLFSQLPLLRTFLTFHSHFIVPSFIAVLFSYDDDPIACQVTGLVHKLCDVTE
Sbjct: 121 DPFSSSSLGLFSQLPLLRTFLTFHSHFIVPSFIAVLFSYDDDPIACQVTGLVHKLCDVTE 180

Query: 181 ADGDGSICDNFIAGVLDRLSYAVLAWSPRQVYMVPNVR 219
           ADGDGSICDNFIAGVLDRLSYAVLAWSPRQVYMVPNVR
Sbjct: 181 ADGDGSICDNFIAGVLDRLSYAVLAWSPRQVYMVPNVR 218

[Close]

BLAST of Carg04925 vs. NCBI nr
Match: KAG6592895.1 (Protein putative RECOMBINATION INITIATION DEFECT 1, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 262.7 bits (670), Expect = 2.8e-66
Identity = 127/127 (100.00%), Postives = 127/127 (100.00%), Query Frame = 0


Query: 92  MATFHRFAFTHRKEEVGTICLLCFSNLISDPFSSSSLGLFSQLPLLRTFLTFHSHFIVPS 151
           MATFHRFAFTHRKEEVGTICLLCFSNLISDPFSSSSLGLFSQLPLLRTFLTFHSHFIVPS
Sbjct: 1   MATFHRFAFTHRKEEVGTICLLCFSNLISDPFSSSSLGLFSQLPLLRTFLTFHSHFIVPS 60

Query: 152 FIAVLFSYDDDPIACQVTGLVHKLCDVTEADGDGSICDNFIAGVLDRLSYAVLAWSPRQV 211
           FIAVLFSYDDDPIACQVTGLVHKLCDVTEADGDGSICDNFIAGVLDRLSYAVLAWSPRQV
Sbjct: 61  FIAVLFSYDDDPIACQVTGLVHKLCDVTEADGDGSICDNFIAGVLDRLSYAVLAWSPRQV 120

Query: 212 YMVPNVR 219
           YMVPNVR
Sbjct: 121 YMVPNVR 127

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BLAST of Carg04925 vs. NCBI nr
Match: XP_038884337.1 (LOW QUALITY PROTEIN: protein PUTATIVE RECOMBINATION INITIATION DEFECT 1-like [Benincasa hispida])

HSP 1 Score: 145.6 bits (366), Expect = 5.0e-31
Identity = 79/128 (61.72%), Postives = 89/128 (69.53%), Query Frame = 0


Query: 96  HRFAFTHRKEEVGTICLLCFSNLISDPFS-----SSSLGLFSQL----PLLRTFLTFHSH 155
           HR +     +E GTICLLCFSNLISDP S     S +L  FSQ     P L+TFLTFHSH
Sbjct: 25  HRSSLCLHTQEGGTICLLCFSNLISDPLSPTVHVSYALSQFSQALSQPPFLQTFLTFHSH 84

Query: 156 FIVPSFIAVLFSYDDDPIACQVTGLVHKLCDVTEADGDGSICDNFIAGVLDRLSYAVLAW 215
            IV  F+A L S+DDD IA QVT LV  LCD+TE DGDGS+CD+FIA V DRLS   LAW
Sbjct: 85  CIVAPFVAALCSFDDDAIARQVTDLVRHLCDITEVDGDGSLCDDFIARVSDRLSSGALAW 144

[Close]

BLAST of Carg04925 vs. NCBI nr
Match: XP_023547735.1 (protein PRD1 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 143.7 bits (361), Expect = 1.9e-30
Identity = 76/137 (55.47%), Postives = 90/137 (65.69%), Query Frame = 0


Query: 87  HDHASMATFHRFAFTHRKEEVGTICLLCFSNLISDPFS---------SSSLGLFSQLPLL 146
           H H S    H        +E G+ICLLCFSNLISDP S         S      SQ P L
Sbjct: 22  HGHPSSLCLH-------TQEGGSICLLCFSNLISDPLSPTVHVSYALSQLSQALSQPPFL 81

Query: 147 RTFLTFHSHFIVPSFIAVLFSYDDDPIACQVTGLVHKLCDVTEADGDGSICDNFIAGVLD 206
           RTFL+FHSHF+V  F+  L S+DDDP+A Q+T LV +LCDV+EADGDGS+CD+F+A V D
Sbjct: 82  RTFLSFHSHFVVAPFVLALCSFDDDPVARQLTDLVRELCDVSEADGDGSLCDDFLARVSD 141

Query: 207 RLSYAVLAWSPRQVYMV 215
           RLS   LAWS RQVYM+
Sbjct: 142 RLSSGALAWSRRQVYML 151

[Close]

BLAST of Carg04925 vs. NCBI nr
Match: XP_022992066.1 (protein PRD1 [Cucurbita maxima])

HSP 1 Score: 143.3 bits (360), Expect = 2.5e-30
Identity = 76/137 (55.47%), Postives = 90/137 (65.69%), Query Frame = 0


Query: 87  HDHASMATFHRFAFTHRKEEVGTICLLCFSNLISDPFS---------SSSLGLFSQLPLL 146
           H H S    H        +E G+ICLLCFSNLISDP S         S      SQ P L
Sbjct: 22  HAHPSSLCLH-------TQEGGSICLLCFSNLISDPLSPTVHVSYALSQLSQALSQPPFL 81

Query: 147 RTFLTFHSHFIVPSFIAVLFSYDDDPIACQVTGLVHKLCDVTEADGDGSICDNFIAGVLD 206
           RTFL+FHSHF+V  F+  L S+DDDP+A Q+T LV +LCDV+EADGDGS+CD+F+A V D
Sbjct: 82  RTFLSFHSHFVVAPFVLALCSFDDDPVARQLTDLVRELCDVSEADGDGSLCDDFLARVSD 141

Query: 207 RLSYAVLAWSPRQVYMV 215
           RLS   LAWS RQVYM+
Sbjct: 142 RLSSGALAWSRRQVYML 151

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BLAST of Carg04925 vs. ExPASy Swiss-Prot
Match: O23277 (Protein PUTATIVE RECOMBINATION INITIATION DEFECT 1 OS=Arabidopsis thaliana OX=3702 GN=PRD1 PE=1 SV=3)

HSP 1 Score: 88.2 bits (217), Expect = 1.3e-16
Identity = 50/131 (38.17%), Postives = 74/131 (56.49%), Query Frame = 0


Query: 93  ATFHRFAFTHRKEEVGTICLLCFSNLISDP--------FSSSSLGLFSQLPL-LRTFLTF 152
           A  HR   + R ++ GT CL+CFSNL+SDP        ++   L +    P+ LRT L+ 
Sbjct: 32  ANGHRSTISLRDDQGGTFCLICFSNLVSDPRIPTVHVSYALHQLSIAISEPIFLRTLLSS 91

Query: 153 HSHFIVPSFIAVLFSYDDDPIACQVTGLVHKLCDVTEADGDGSICDNFIAGVLDRLSYAV 212
           H HF+V   +  L S DD PIA Q+  ++  LC V E+    SI ++F+  + D+LS   
Sbjct: 92  HIHFLVSPLVHALSSIDDAPIAIQIMDMISLLCSVEES----SIGEDFVERISDQLSSGA 151

Query: 213 LAWSPRQVYMV 215
           L WS RQ++M+
Sbjct: 152 LGWSRRQLHML 158

[Close]

BLAST of Carg04925 vs. ExPASy TrEMBL
Match: A0A6J1JSI6 (protein PRD1 OS=Cucurbita maxima OX=3661 GN=LOC111488525 PE=4 SV=1)

HSP 1 Score: 143.3 bits (360), Expect = 1.2e-30
Identity = 76/137 (55.47%), Postives = 90/137 (65.69%), Query Frame = 0


Query: 87  HDHASMATFHRFAFTHRKEEVGTICLLCFSNLISDPFS---------SSSLGLFSQLPLL 146
           H H S    H        +E G+ICLLCFSNLISDP S         S      SQ P L
Sbjct: 22  HAHPSSLCLH-------TQEGGSICLLCFSNLISDPLSPTVHVSYALSQLSQALSQPPFL 81

Query: 147 RTFLTFHSHFIVPSFIAVLFSYDDDPIACQVTGLVHKLCDVTEADGDGSICDNFIAGVLD 206
           RTFL+FHSHF+V  F+  L S+DDDP+A Q+T LV +LCDV+EADGDGS+CD+F+A V D
Sbjct: 82  RTFLSFHSHFVVAPFVLALCSFDDDPVARQLTDLVRELCDVSEADGDGSLCDDFLARVSD 141

Query: 207 RLSYAVLAWSPRQVYMV 215
           RLS   LAWS RQVYM+
Sbjct: 142 RLSSGALAWSRRQVYML 151

[Close]

BLAST of Carg04925 vs. ExPASy TrEMBL
Match: A0A6J1ET85 (protein PRD1 OS=Cucurbita moschata OX=3662 GN=LOC111436301 PE=4 SV=1)

HSP 1 Score: 140.6 bits (353), Expect = 7.9e-30
Identity = 75/137 (54.74%), Postives = 89/137 (64.96%), Query Frame = 0


Query: 87  HDHASMATFHRFAFTHRKEEVGTICLLCFSNLISDPFS---------SSSLGLFSQLPLL 146
           H H S    H        +E G+ICLLCFSNLISDP S         S      SQ P L
Sbjct: 22  HAHPSSLCLH-------TQEGGSICLLCFSNLISDPLSPTVHVSYALSQLSQALSQPPFL 81

Query: 147 RTFLTFHSHFIVPSFIAVLFSYDDDPIACQVTGLVHKLCDVTEADGDGSICDNFIAGVLD 206
           RTFL+FHSHF+V  F+  L S+DD P+A Q+T LV +LCDV+EADGDGS+CD+F+A V D
Sbjct: 82  RTFLSFHSHFVVAPFVLALCSFDDGPVARQLTDLVRELCDVSEADGDGSLCDDFLARVSD 141

Query: 207 RLSYAVLAWSPRQVYMV 215
           RLS   LAWS RQVYM+
Sbjct: 142 RLSSGALAWSRRQVYML 151

[Close]

BLAST of Carg04925 vs. ExPASy TrEMBL
Match: A0A6J1DAL8 (protein PRD1 isoform X3 OS=Momordica charantia OX=3673 GN=LOC111018566 PE=4 SV=1)

HSP 1 Score: 139.0 bits (349), Expect = 2.3e-29
Identity = 80/149 (53.69%), Postives = 94/149 (63.09%), Query Frame = 0


Query: 75  NQHRKNRIDPFFHDHASMATFHRFAFTHRKEEVGTICLLCFSNLISDPFS-----SSSLG 134
           +Q+R N      H H S    H        +E GTICLLCFSNLISDP S     S +L 
Sbjct: 19  DQNRYNSPQSCSHGHRSSLCLH-------TQEGGTICLLCFSNLISDPLSPTVHVSYALS 78

Query: 135 LFSQL----PLLRTFLTFHSHFIVPSFIAVLFSYDDDPIACQVTGLVHKLCDVTEADGDG 194
             SQ     P LRTFLTFHSHFIV  F+A L  +DD+PIA Q+T LV +LCD + ADGDG
Sbjct: 79  QLSQALAQPPFLRTFLTFHSHFIVSPFVAALCCFDDEPIARQLTDLVRQLCDFSAADGDG 138

Query: 195 SICDNFIAGVLDRLSYAVLAWSPRQVYMV 215
           S+ ++FIA V DRLS   LAWS RQVYM+
Sbjct: 139 SLSEDFIARVSDRLSSGALAWSRRQVYML 160

[Close]

BLAST of Carg04925 vs. ExPASy TrEMBL
Match: A0A6J1D8C7 (protein PRD1 isoform X1 OS=Momordica charantia OX=3673 GN=LOC111018566 PE=4 SV=1)

HSP 1 Score: 139.0 bits (349), Expect = 2.3e-29
Identity = 80/149 (53.69%), Postives = 94/149 (63.09%), Query Frame = 0


Query: 75  NQHRKNRIDPFFHDHASMATFHRFAFTHRKEEVGTICLLCFSNLISDPFS-----SSSLG 134
           +Q+R N      H H S    H        +E GTICLLCFSNLISDP S     S +L 
Sbjct: 19  DQNRYNSPQSCSHGHRSSLCLH-------TQEGGTICLLCFSNLISDPLSPTVHVSYALS 78

Query: 135 LFSQL----PLLRTFLTFHSHFIVPSFIAVLFSYDDDPIACQVTGLVHKLCDVTEADGDG 194
             SQ     P LRTFLTFHSHFIV  F+A L  +DD+PIA Q+T LV +LCD + ADGDG
Sbjct: 79  QLSQALAQPPFLRTFLTFHSHFIVSPFVAALCCFDDEPIARQLTDLVRQLCDFSAADGDG 138

Query: 195 SICDNFIAGVLDRLSYAVLAWSPRQVYMV 215
           S+ ++FIA V DRLS   LAWS RQVYM+
Sbjct: 139 SLSEDFIARVSDRLSSGALAWSRRQVYML 160

[Close]

BLAST of Carg04925 vs. ExPASy TrEMBL
Match: A0A6J1DBD4 (protein PRD1 isoform X2 OS=Momordica charantia OX=3673 GN=LOC111018566 PE=4 SV=1)

HSP 1 Score: 139.0 bits (349), Expect = 2.3e-29
Identity = 80/149 (53.69%), Postives = 94/149 (63.09%), Query Frame = 0


Query: 75  NQHRKNRIDPFFHDHASMATFHRFAFTHRKEEVGTICLLCFSNLISDPFS-----SSSLG 134
           +Q+R N      H H S    H        +E GTICLLCFSNLISDP S     S +L 
Sbjct: 19  DQNRYNSPQSCSHGHRSSLCLH-------TQEGGTICLLCFSNLISDPLSPTVHVSYALS 78

Query: 135 LFSQL----PLLRTFLTFHSHFIVPSFIAVLFSYDDDPIACQVTGLVHKLCDVTEADGDG 194
             SQ     P LRTFLTFHSHFIV  F+A L  +DD+PIA Q+T LV +LCD + ADGDG
Sbjct: 79  QLSQALAQPPFLRTFLTFHSHFIVSPFVAALCCFDDEPIARQLTDLVRQLCDFSAADGDG 138

Query: 195 SICDNFIAGVLDRLSYAVLAWSPRQVYMV 215
           S+ ++FIA V DRLS   LAWS RQVYM+
Sbjct: 139 SLSEDFIARVSDRLSSGALAWSRRQVYML 160

[Close]

BLAST of Carg04925 vs. TAIR 10
Match: AT4G14180.1 (putative recombination initiation defect 1 )

HSP 1 Score: 88.2 bits (217), Expect = 8.9e-18
Identity = 50/131 (38.17%), Postives = 74/131 (56.49%), Query Frame = 0


Query: 93  ATFHRFAFTHRKEEVGTICLLCFSNLISDP--------FSSSSLGLFSQLPL-LRTFLTF 152
           A  HR   + R ++ GT CL+CFSNL+SDP        ++   L +    P+ LRT L+ 
Sbjct: 32  ANGHRSTISLRDDQGGTFCLICFSNLVSDPRIPTVHVSYALHQLSIAISEPIFLRTLLSS 91

Query: 153 HSHFIVPSFIAVLFSYDDDPIACQVTGLVHKLCDVTEADGDGSICDNFIAGVLDRLSYAV 212
           H HF+V   +  L S DD PIA Q+  ++  LC V E+    SI ++F+  + D+LS   
Sbjct: 92  HIHFLVSPLVHALSSIDDAPIAIQIMDMISLLCSVEES----SIGEDFVERISDQLSSGA 151

Query: 213 LAWSPRQVYMV 215
           L WS RQ++M+
Sbjct: 152 LGWSRRQLHML 158

The following BLAST results are available for this feature:

BLAST of Carg04925 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG7025297.1	2.5e-123	100.00	Protein PRD1, partial [Cucurbita argyrosperma subsp. argyrosperma]	[more]
KAG6592895.1	2.8e-66	100.00	Protein putative RECOMBINATION INITIATION DEFECT 1, partial [Cucurbita argyrospe...	[more]
XP_038884337.1	5.0e-31	61.72	LOW QUALITY PROTEIN: protein PUTATIVE RECOMBINATION INITIATION DEFECT 1-like [Be...	[more]
XP_023547735.1	1.9e-30	55.47	protein PRD1 [Cucurbita pepo subsp. pepo]	[more]
XP_022992066.1	2.5e-30	55.47	protein PRD1 [Cucurbita maxima]	[more]

BLAST of Carg04925 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
O23277	1.3e-16	38.17	Protein PUTATIVE RECOMBINATION INITIATION DEFECT 1 OS=Arabidopsis thaliana OX=37...	[more]

BLAST of Carg04925 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1JSI6	1.2e-30	55.47	protein PRD1 OS=Cucurbita maxima OX=3661 GN=LOC111488525 PE=4 SV=1	[more]
A0A6J1ET85	7.9e-30	54.74	protein PRD1 OS=Cucurbita moschata OX=3662 GN=LOC111436301 PE=4 SV=1	[more]
A0A6J1DAL8	2.3e-29	53.69	protein PRD1 isoform X3 OS=Momordica charantia OX=3673 GN=LOC111018566 PE=4 SV=1	[more]
A0A6J1D8C7	2.3e-29	53.69	protein PRD1 isoform X1 OS=Momordica charantia OX=3673 GN=LOC111018566 PE=4 SV=1	[more]
A0A6J1DBD4	2.3e-29	53.69	protein PRD1 isoform X2 OS=Momordica charantia OX=3673 GN=LOC111018566 PE=4 SV=1	[more]

BLAST of Carg04925 vs. TAIR 10


Match Name	E-value	Identity	Description
AT4G14180.1	8.9e-18	38.17	putative recombination initiation defect 1	[more]

InterPro

Analysis Name: InterPro Annotations of Silver-seed gourd (SMH-JMG-627) v2
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR044968	Protein PUTATIVE RECOMBINATION INITIATION DEFECT 1	PANTHER	PTHR36379	PROTEIN PRD1	coord: 90..214

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Carg04925-RA	Carg04925-RA	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0042138	meiotic DNA double-strand break formation