Carg04909 (gene) Silver-seed gourd (SMH-JMG-627) v2

Overview
NameCarg04909
Typegene
OrganismCucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
DescriptionUnknown protein
LocationCarg_Chr08: 391451 .. 393012 (+)
RNA-Seq ExpressionCarg04909
SyntenyCarg04909
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGAAGCGGTGAGGCAGAAGAGGAAACGACGGCGCGGTTGGCTCAGCCCTAACTCGAGATACGACTCCGAACTGCGGTGGAAAGAAATGGAGGCAATTTCCAGATGTGGGGGCAATTTTCAAAACTATAAAATTTGGAAAAATAGTCCTTTTTTATTTATTCCAATTTTACCCTTCTTTTTTTTTTTTACGAGTTTTATTGTAAAATTTCATTTTTAAAAAATTACTATATGCTTTTAACAATTCAAAATTAATAATATTTCATAGCATTTGAGTCTTATCATTTTTTTTTGTTTGTTAAAATTTGTGAATTGCCCGAACATTTAAGCTTTTTTTTGCCCTAAGAGCGATTGGTCGTGGGGTTATTTAGATTAGGCGGTTAAAGAAAGCTCGGGTCCAATGGGCTAGGACTCGATTGCTCATGAGTTCGCTAACCTAGGCTCAATCGAACCCAAACTCGCCTCCCAAATAACATATGGTTCTAGTCATTCCTCTTCGAGTTGTTATCTTCGAGATATATTTCATAGAGTCTAATTTTATTCTAACATCTTACCTAATCAAATAGCATTTTATGACACAAATTTCAAAAAATAATAATTAATAATAAACGAGTTATATTATTAAGACTATGTTTTAAACTTAGAACATAACTCTAAGTTAGAATATAATTGTGATGGATAAAATATATTTTTTAAAATTTTAGCTAAATTAAAATTTGAGGGTGTTATATTAAATTTTCTATCCGTAGATAAAAGAAAATATACATTTTTTTTGAAAGCAAAATAATTAGACAATTAAATATGAAATTCTTAAATTTAAAATTTGAAAATTTGAATGTTAAATGTTTGAAATATCTATTTTAGCTCTTAAATTTTAAAACCATATTCAAATTAAAAATTTATTAAAATAATATCAGCTCCAAATTTTTATTTAAAGCACGACAGGTAAAAGCTAAAATAGTTATTTATTATTTATTATTATTAATTTGGCGAACTAAACTAAATATTTAATAATTATTTATCAGAACTTAAAAGCTAAAGAAATATTAACCTCAACCGGCCGTTGATTGGTCTGTCACCTTTGTTGCGTCACCCTCTTGGTGAAGAGAATTTCCGAAGCCGCGTTTGTGTGAATTCAACGATCTTAAAATTTGGTTTAACCAAAAAAAAAAAAAAAAAAAAAAAAAGAAAAAAAAAGAAAAAAAAGAAAAAAAAGAAGTTAAGAGAGAGAAAGAGAGCTTTAACAACAAACGTTTCGCGCGATCTCTCTCTCTATATGAGAAATTTGCGTTCTCCTCGAATATGCTAGCATTTCAAATTCCGTAACAGGTAAGATCGGAGAGAGATCGAATTCTCTGGAGGAGAGTTTAGAAGCCTACACGATTCTGAATCCATGTTCGTTTTCAGTGTGTTTGCCTGTTTATTTTGAGTTTTTCTGTTGCAGTTGCCGCGGTGTTGGATCTAGCTAGCCCGTTTTACCGTCGGGGGAATTCTCGTCGAGCTAATTCTTCCTTGAATGCTCGGCTCTGGAGGCGTGTAGATCAGGTGGGTTTTGTGATTTGA

mRNA sequence

ATGGAAGCGGTGAGGCAGAAGAGGAAACGACGGCGCGGTTGGCTCAGCCCTAACTCGAGATACGACTCCGAACTGCGGTGGAAAGAAATGGAGGCAATTTCCAGATTTGCCGCGGTGTTGGATCTAGCTAGCCCGTTTTACCGTCGGGGGAATTCTCGTCGAGCTAATTCTTCCTTGAATGCTCGGCTCTGGAGGCGTGTAGATCAGGTGGGTTTTGTGATTTGA

Coding sequence (CDS)

ATGGAAGCGGTGAGGCAGAAGAGGAAACGACGGCGCGGTTGGCTCAGCCCTAACTCGAGATACGACTCCGAACTGCGGTGGAAAGAAATGGAGGCAATTTCCAGATTTGCCGCGGTGTTGGATCTAGCTAGCCCGTTTTACCGTCGGGGGAATTCTCGTCGAGCTAATTCTTCCTTGAATGCTCGGCTCTGGAGGCGTGTAGATCAGGTGGGTTTTGTGATTTGA

Protein sequence

MEAVRQKRKRRRGWLSPNSRYDSELRWKEMEAISRFAAVLDLASPFYRRGNSRRANSSLNARLWRRVDQVGFVI
Homology
[Close]
BLAST of Carg04909 vs. NCBI nr
Match: KAG7025282.1 (hypothetical protein SDJN02_11777, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 149.8 bits (377), Expect = 9.1e-33
Identity = 74/74 (100.00%), Postives = 74/74 (100.00%), Query Frame = 0 

Query: 1  MEAVRQKRKRRRGWLSPNSRYDSELRWKEMEAISRFAAVLDLASPFYRRGNSRRANSSLN 60
          MEAVRQKRKRRRGWLSPNSRYDSELRWKEMEAISRFAAVLDLASPFYRRGNSRRANSSLN
Sbjct: 1  MEAVRQKRKRRRGWLSPNSRYDSELRWKEMEAISRFAAVLDLASPFYRRGNSRRANSSLN 60

Query: 61 ARLWRRVDQVGFVI 75
          ARLWRRVDQVGFVI
Sbjct: 61 ARLWRRVDQVGFVI 74

[Close]
BLAST of Carg04909 vs. NCBI nr
Match: KAG6592877.1 (CMP-sialic acid transporter 3, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 115.9 bits (289), Expect = 1.5e-22
Identity = 59/72 (81.94%), Postives = 62/72 (86.11%), Query Frame = 0 

Query: 1   MEAVRQKRKRRRGWLSPNSRYDSELRWKEMEAISR---FAAVLDLASPFYRRGNSRRANS 60
           +E VRQ RKRRRGW SPNSRYDSELRWK+ + IS     AAVLDLASPFYRRGNSRRANS
Sbjct: 33  LEPVRQNRKRRRGWFSPNSRYDSELRWKKWKRISNSVTVAAVLDLASPFYRRGNSRRANS 92

Query: 61  SLNARLWRRVDQ 70
           SLNARLWRRVDQ
Sbjct: 93  SLNARLWRRVDQ 104

The following BLAST results are available for this feature:
BLAST of Carg04909 vs. NCBI nr
Match NameE-valueIdentityDescription
KAG7025282.19.1e-33100.00hypothetical protein SDJN02_11777, partial [Cucurbita argyrosperma subsp. argyro... [more]
KAG6592877.11.5e-2281.94CMP-sialic acid transporter 3, partial [Cucurbita argyrosperma subsp. sororia][more]
BLAST of Carg04909 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of Carg04909 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of Carg04909 vs. NCBI nr
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Carg04909-RACarg04909-RAmRNA