Carg04882 (gene) Silver-seed gourd (SMH-JMG-627) v2
Overview
Sequences
The following sequences are available for this feature:
Legend: exonfive_prime_UTRCDSpolypeptidethree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.AGTAATCTTAGTATGAAATTTCGGAACTATGTTCCTCATGATAAGGAGCTTCAGGAGGGAAAGCTTGTTCCACCTGTATTGCCGAAGTTTGAGGACCCTGTTGCTACTGAACCTCCACAATTAAAAGAGGTAGTTTTTTCAGTTCTGCTTTTATATGTTCTTAAATTAACCATTGCTTGTACTTGTCGGATCTTTTGTATTAATTACATTCCACTGGAAAATTTGTAGGATCCATTTGTAAATATTGCTCCAAAGAAACCAAACTGGGATCTTAGAAGGGATGTGCAGAAGAAGCTTGATAAGCTAGAAAGACGTACTCAGAAAGCATTATATAAGCTTATGGGTGAGTAGGAATTTTGAATTAAAGCTCTGCCAACTTCATAAGTCTCTGTTTTATGTTCATTCTTTTACTCGCTTCATTTGGTATAGTAATTGGACATGGGAAATTTAATTTATTCGCTTTGTTTGTCTGGGAAGATATCTATCTCTAGTCAATTAGCATATATATAATATTGTTTTTATCTCCTAGTTCTATCTCGTGGTTCCATAAATATATATTTCATGTATTTTACAATACTCCACAAGTTTCTTATAAAAAAAATTTGAAGTCTATCAGTTGTGGATCTTTTCATTTAACAGTCATCCCTGCTGGGTAGTTAAAGTTGGGGGGATTTCTGGGTATCGAGGGAAGTTGTGGAGATTGGAGTAGAATAGGGCTAGTTTAAACTATAACCTTCCAGTCTTTAAAGGGAATTATTGAACCTAAGAAACTACAATCTTTAGGAGATGTAGGTTACTCTCATTACCGTATGCATTGGAAGTTACAAGAGTGATTATTGTGTGTATCATAAGATGGTAGAAAATGATATGAAGCTCCTAAAATTTAATAGTGGTTACAACTTAGAGCACCCCTTCTTACCTTTATGAACTTTATTTTCGTGCAATCTTTTGTAGAGGAACAGGAAAAACAAAAGCAGTCAGCTGAAGGAGACGATGACCAAAATATTACAGAATGATAGTATGCCGCCCAAGTTATGAGTTCTCCAGTATTACAGTCGCAATATTCACTACTATTCCGACGGCTTTATGTCTCATATGGTCAGATTTTCTGTAACCTTTCTGATCATTCTTTGCCGCAAATCTTTTGCTTTTAATTTATCTATTGTGGCTCTCATGGTGTTCCTTGACTAACTATGCCCCATAGCATATCTCACACTGGATAGTGATTTGTGATTTGTACCTATGCTAAAAATTACTTTGTACTTCATCTTATCTTCATTTTGAACCGTTTTCTTATTTTT AGTAATCTTAGTATGAAATTTCGGAACTATGTTCCTCATGATAAGGAGCTTCAGGAGGGAAAGCTTGTTCCACCTGTATTGCCGAAGTTTGAGGACCCTGTTGCTACTGAACCTCCACAATTAAAAGAGGATCCATTTGTAAATATTGCTCCAAAGAAACCAAACTGGGATCTTAGAAGGGATGTGCAGAAGAAGCTTGATAAGCTAGAAAGACGTACTCAGAAAGCATTATATAAGCTTATGGAGGAACAGGAAAAACAAAAGCAGTCAGCTGAAGGAGACGATGACCAAAATATTACAGAATGATAGTATGCCGCCCAAGTTATGAGTTCTCCAGTATTACAGTCGCAATATTCACTACTATTCCGACGGCTTTATGTCTCATATGGTCAGATTTTCTGTAACCTTTCTGATCATTCTTTGCCGCAAATCTTTTGCTTTTAATTTATCTATTGTGGCTCTCATGGTGTTCCTTGACTAACTATGCCCCATAGCATATCTCACACTGGATAGTGATTTGTGATTTGTACCTATGCTAAAAATTACTTTGTACTTCATCTTATCTTCATTTTGAACCGTTTTCTTATTTTT ATGAAATTTCGGAACTATGTTCCTCATGATAAGGAGCTTCAGGAGGGAAAGCTTGTTCCACCTGTATTGCCGAAGTTTGAGGACCCTGTTGCTACTGAACCTCCACAATTAAAAGAGGATCCATTTGTAAATATTGCTCCAAAGAAACCAAACTGGGATCTTAGAAGGGATGTGCAGAAGAAGCTTGATAAGCTAGAAAGACGTACTCAGAAAGCATTATATAAGCTTATGGAGGAACAGGAAAAACAAAAGCAGTCAGCTGAAGGAGACGATGACCAAAATATTACAGAATGA MKFRNYVPHDKELQEGKLVPPVLPKFEDPVATEPPQLKEDPFVNIAPKKPNWDLRRDVQKKLDKLERRTQKALYKLMEEQEKQKQSAEGDDDQNITE Homology
BLAST of Carg04882 vs. NCBI nr
Match: KAG7019878.1 (Coiled-coil domain-containing protein 12 [Cucurbita argyrosperma subsp. argyrosperma]) HSP 1 Score: 191.4 bits (485), Expect = 3.6e-45 Identity = 97/97 (100.00%), Postives = 97/97 (100.00%), Query Frame = 0
BLAST of Carg04882 vs. NCBI nr
Match: XP_023520254.1 (coiled-coil domain-containing protein 12-like [Cucurbita pepo subsp. pepo] >XP_023520255.1 coiled-coil domain-containing protein 12-like [Cucurbita pepo subsp. pepo]) HSP 1 Score: 191.4 bits (485), Expect = 3.6e-45 Identity = 97/97 (100.00%), Postives = 97/97 (100.00%), Query Frame = 0
BLAST of Carg04882 vs. NCBI nr
Match: KAG6584286.1 (Coiled-coil domain-containing protein 12, partial [Cucurbita argyrosperma subsp. sororia]) HSP 1 Score: 191.4 bits (485), Expect = 3.6e-45 Identity = 97/97 (100.00%), Postives = 97/97 (100.00%), Query Frame = 0
BLAST of Carg04882 vs. NCBI nr
Match: XP_022923663.1 (coiled-coil domain-containing protein 12-like [Cucurbita moschata] >XP_022923664.1 coiled-coil domain-containing protein 12-like [Cucurbita moschata]) HSP 1 Score: 189.1 bits (479), Expect = 1.8e-44 Identity = 96/97 (98.97%), Postives = 96/97 (98.97%), Query Frame = 0
BLAST of Carg04882 vs. NCBI nr
Match: XP_023542240.1 (coiled-coil domain-containing protein 12-like [Cucurbita pepo subsp. pepo] >XP_023542241.1 coiled-coil domain-containing protein 12-like [Cucurbita pepo subsp. pepo] >XP_023542242.1 coiled-coil domain-containing protein 12-like [Cucurbita pepo subsp. pepo] >XP_023542243.1 coiled-coil domain-containing protein 12-like [Cucurbita pepo subsp. pepo]) HSP 1 Score: 187.2 bits (474), Expect = 6.7e-44 Identity = 95/97 (97.94%), Postives = 95/97 (97.94%), Query Frame = 0
BLAST of Carg04882 vs. ExPASy Swiss-Prot
Match: Q8R344 (Coiled-coil domain-containing protein 12 OS=Mus musculus OX=10090 GN=Ccdc12 PE=1 SV=2) HSP 1 Score: 65.5 bits (158), Expect = 3.9e-10 Identity = 38/94 (40.43%), Postives = 61/94 (64.89%), Query Frame = 0
BLAST of Carg04882 vs. ExPASy Swiss-Prot
Match: Q8WUD4 (Coiled-coil domain-containing protein 12 OS=Homo sapiens OX=9606 GN=CCDC12 PE=1 SV=1) HSP 1 Score: 64.3 bits (155), Expect = 8.6e-10 Identity = 37/94 (39.36%), Postives = 62/94 (65.96%), Query Frame = 0
BLAST of Carg04882 vs. ExPASy TrEMBL
Match: A0A6J1E719 (coiled-coil domain-containing protein 12-like OS=Cucurbita moschata OX=3662 GN=LOC111431306 PE=4 SV=1) HSP 1 Score: 189.1 bits (479), Expect = 8.6e-45 Identity = 96/97 (98.97%), Postives = 96/97 (98.97%), Query Frame = 0
BLAST of Carg04882 vs. ExPASy TrEMBL
Match: A0A6J1GST8 (coiled-coil domain-containing protein 12-like OS=Cucurbita moschata OX=3662 GN=LOC111457177 PE=4 SV=1) HSP 1 Score: 187.2 bits (474), Expect = 3.3e-44 Identity = 95/97 (97.94%), Postives = 95/97 (97.94%), Query Frame = 0
BLAST of Carg04882 vs. ExPASy TrEMBL
Match: A0A6J1JYP1 (coiled-coil domain-containing protein 12-like isoform X1 OS=Cucurbita maxima OX=3661 GN=LOC111490058 PE=4 SV=1) HSP 1 Score: 186.8 bits (473), Expect = 4.3e-44 Identity = 95/97 (97.94%), Postives = 95/97 (97.94%), Query Frame = 0
BLAST of Carg04882 vs. ExPASy TrEMBL
Match: A0A1S3ATB1 (coiled-coil domain-containing protein 12 OS=Cucumis melo OX=3656 GN=LOC103482658 PE=4 SV=1) HSP 1 Score: 179.9 bits (455), Expect = 5.2e-42 Identity = 91/97 (93.81%), Postives = 92/97 (94.85%), Query Frame = 0
BLAST of Carg04882 vs. ExPASy TrEMBL
Match: A0A5D3BJ95 (Coiled-coil domain-containing protein 12 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold248G002830 PE=4 SV=1) HSP 1 Score: 179.9 bits (455), Expect = 5.2e-42 Identity = 91/97 (93.81%), Postives = 92/97 (94.85%), Query Frame = 0
BLAST of Carg04882 vs. TAIR 10
Match: AT3G05070.1 (CONTAINS InterPro DOMAIN/s: mRNA splicing factor, Cwf18 (InterPro:IPR013169); Has 292 Blast hits to 292 proteins in 153 species: Archae - 0; Bacteria - 0; Metazoa - 118; Fungi - 83; Plants - 38; Viruses - 11; Other Eukaryotes - 42 (source: NCBI BLink). ) HSP 1 Score: 142.1 bits (357), Expect = 2.3e-34 Identity = 72/92 (78.26%), Postives = 80/92 (86.96%), Query Frame = 0
The following BLAST results are available for this feature:
InterPro
Analysis Name: InterPro Annotations of Silver-seed gourd (SMH-JMG-627) v2
Date Performed: 2021-10-25
Relationships
The following mRNA feature(s) are a part of this gene:
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
|