Carg04853 (gene) Silver-seed gourd (SMH-JMG-627) v2

Overview


Name	Carg04853
Type	gene
Organism	Cucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
Description	DDE Tnp4 domain-containing protein
Location	Carg_Chr13: 8931264 .. 8932151 (-)
RNA-Seq Expression	Carg04853
Synteny	Carg04853

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

TGAGAATAAATAAAAGAAAACAGACACAAAAAGGCTGCACGCACTAACAAATCATTTCAAAACCCATTTCTATTTTCATCTCTCTGTCTCTCAATTTCTTCTTCTTCTTTGTTTTTACTTCTCATTCAAATTTCAGTCTCGGTTGCTATACCAAGAGACCTTAAGAGATGTTGAATCCGGCCAACGATCTGTTACCGCCGCCGTCGTCTCCGACCAATTCATCCATTTCCTCCTCCGATCTCGACACTGAGGTGCCCATCCTCGCCGTCTCCCATTTTCTGATTCTCTCTCTGTTTTTCATTTTGGGAATTCAATTTTGTTTTGCAGTCTACAGGTTCGTTCTTCCATGACAGGAGCACCAGCTTGGGGACTCTAATGGGTGTTAGTTTCCCGGCGATTACCTTCCGAGTGCCCTCCCAGAACCGAGACCAACACGCCGCCGCGACCGCCGCCGCTGGTGGTGGTTCCCGCAAGAGTAAGAAGCCAAAGAGAAAAACGACGGCAGCGCCGGCACTGGTCGCAGATCGGAAACGGCGGTGGTGGCGGCTATGCAGGGATGACGGTGTTAAGCCGGCGTCTCTGGGCGAGTTTCTTGAGGTGGAACGGAGATTTGGGGACGGTGCTTTCTTCGGCAACGCGGTGGATCTGGAAGGCGTAGTTTCGGCGGATCAGCAGAGGAATGGCCGGTCTTTGTTCGCCGATGGGAGGGTTCTTCCGCCGGCACAAACGGACGAAGATACGTCTGCGGCCGGCGCTCTATGCCGATTTTCTGTATCGCTCACCGGAATTTGCAGCGGCGGTGCCGGCTAAAATGTGGGATTTGATTTGTGAGAGTATATTTAAAATCTTATATTATATTTAATTAATCAAACGCTTGAATTAAGGTGG

mRNA sequence

TGAGAATAAATAAAAGAAAACAGACACAAAAAGGCTGCACGCACTAACAAATCATTTCAAAACCCATTTCTATTTTCATCTCTCTGTCTCTCAATTTCTTCTTCTTCTTTGTTTTTACTTCTCATTCAAATTTCAGTCTCGGTTGCTATACCAAGAGACCTTAAGAGATGTTGAATCCGGCCAACGATCTGTTACCGCCGCCGTCGTCTCCGACCAATTCATCCATTTCCTCCTCCGATCTCGACACTGAGTCTACAGGTTCGTTCTTCCATGACAGGAGCACCAGCTTGGGGACTCTAATGGGTGTTAGTTTCCCGGCGATTACCTTCCGAGTGCCCTCCCAGAACCGAGACCAACACGCCGCCGCGACCGCCGCCGCTGGTGGTGGTTCCCGCAAGAGTAAGAAGCCAAAGAGAAAAACGACGGCAGCGCCGGCACTGGTCGCAGATCGGAAACGGCGGTGGTGGCGGCTATGCAGGGATGACGGTGTTAAGCCGGCGTCTCTGGGCGAGTTTCTTGAGGTGGAACGGAGATTTGGGGACGGTGCTTTCTTCGGCAACGCGGTGGATCTGGAAGGCGTAGTTTCGGCGGATCAGCAGAGGAATGGCCGGTCTTTGTTCGCCGATGGGAGGGTTCTTCCGCCGGCACAAACGGACGAAGATACGTCTGCGGCCGGCGCTCTATGCCGATTTTCTGTATCGCTCACCGGAATTTGCAGCGGCGGTGCCGGCTAAAATGTGGGATTTGATTTGTGAGAGTATATTTAAAATCTTATATTATATTTAATTAATCAAACGCTTGAATTAAGGTGG

Coding sequence (CDS)

ATGTTGAATCCGGCCAACGATCTGTTACCGCCGCCGTCGTCTCCGACCAATTCATCCATTTCCTCCTCCGATCTCGACACTGAGTCTACAGGTTCGTTCTTCCATGACAGGAGCACCAGCTTGGGGACTCTAATGGGTGTTAGTTTCCCGGCGATTACCTTCCGAGTGCCCTCCCAGAACCGAGACCAACACGCCGCCGCGACCGCCGCCGCTGGTGGTGGTTCCCGCAAGAGTAAGAAGCCAAAGAGAAAAACGACGGCAGCGCCGGCACTGGTCGCAGATCGGAAACGGCGGTGGTGGCGGCTATGCAGGGATGACGGTGTTAAGCCGGCGTCTCTGGGCGAGTTTCTTGAGGTGGAACGGAGATTTGGGGACGGTGCTTTCTTCGGCAACGCGGTGGATCTGGAAGGCGTAGTTTCGGCGGATCAGCAGAGGAATGGCCGGTCTTTGTTCGCCGATGGGAGGGTTCTTCCGCCGGCACAAACGGACGAAGATACGTCTGCGGCCGGCGCTCTATGCCGATTTTCTGTATCGCTCACCGGAATTTGCAGCGGCGGTGCCGGCTAA

Protein sequence

MLNPANDLLPPPSSPTNSSISSSDLDTESTGSFFHDRSTSLGTLMGVSFPAITFRVPSQNRDQHAAATAAAGGGSRKSKKPKRKTTAAPALVADRKRRWWRLCRDDGVKPASLGEFLEVERRFGDGAFFGNAVDLEGVVSADQQRNGRSLFADGRVLPPAQTDEDTSAAGALCRFSVSLTGICSGGAG

Homology

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BLAST of Carg04853 vs. NCBI nr
Match: KAG6584313.1 (hypothetical protein SDJN03_20245, partial [Cucurbita argyrosperma subsp. sororia] >KAG7019905.1 hypothetical protein SDJN02_18872 [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 366.7 bits (940), Expect = 1.2e-97
Identity = 188/188 (100.00%), Postives = 188/188 (100.00%), Query Frame = 0


Query: 1   MLNPANDLLPPPSSPTNSSISSSDLDTESTGSFFHDRSTSLGTLMGVSFPAITFRVPSQN 60
           MLNPANDLLPPPSSPTNSSISSSDLDTESTGSFFHDRSTSLGTLMGVSFPAITFRVPSQN
Sbjct: 1   MLNPANDLLPPPSSPTNSSISSSDLDTESTGSFFHDRSTSLGTLMGVSFPAITFRVPSQN 60

Query: 61  RDQHAAATAAAGGGSRKSKKPKRKTTAAPALVADRKRRWWRLCRDDGVKPASLGEFLEVE 120
           RDQHAAATAAAGGGSRKSKKPKRKTTAAPALVADRKRRWWRLCRDDGVKPASLGEFLEVE
Sbjct: 61  RDQHAAATAAAGGGSRKSKKPKRKTTAAPALVADRKRRWWRLCRDDGVKPASLGEFLEVE 120

Query: 121 RRFGDGAFFGNAVDLEGVVSADQQRNGRSLFADGRVLPPAQTDEDTSAAGALCRFSVSLT 180
           RRFGDGAFFGNAVDLEGVVSADQQRNGRSLFADGRVLPPAQTDEDTSAAGALCRFSVSLT
Sbjct: 121 RRFGDGAFFGNAVDLEGVVSADQQRNGRSLFADGRVLPPAQTDEDTSAAGALCRFSVSLT 180

Query: 181 GICSGGAG 189
           GICSGGAG
Sbjct: 181 GICSGGAG 188

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BLAST of Carg04853 vs. NCBI nr
Match: XP_022924210.1 (uncharacterized protein At3g17950 [Cucurbita moschata] >XP_022924211.1 uncharacterized protein At3g17950 [Cucurbita moschata])

HSP 1 Score: 365.2 bits (936), Expect = 3.5e-97
Identity = 187/188 (99.47%), Postives = 188/188 (100.00%), Query Frame = 0


Query: 1   MLNPANDLLPPPSSPTNSSISSSDLDTESTGSFFHDRSTSLGTLMGVSFPAITFRVPSQN 60
           MLNPANDLLPPPSSPTNSSISSSDLDTESTGSFFHDRSTSLGTLMGVSFPAITFRVPSQN
Sbjct: 1   MLNPANDLLPPPSSPTNSSISSSDLDTESTGSFFHDRSTSLGTLMGVSFPAITFRVPSQN 60

Query: 61  RDQHAAATAAAGGGSRKSKKPKRKTTAAPALVADRKRRWWRLCRDDGVKPASLGEFLEVE 120
           RDQHAAATAAAGGGSRKSKKPKRKTTAAPALVADRKRRWWRLCRDDGVKPASLGEFLEVE
Sbjct: 61  RDQHAAATAAAGGGSRKSKKPKRKTTAAPALVADRKRRWWRLCRDDGVKPASLGEFLEVE 120

Query: 121 RRFGDGAFFGNAVDLEGVVSADQQRNGRSLFADGRVLPPAQTDEDTSAAGALCRFSVSLT 180
           RRFGDGAFFGNAVDLEGVVSADQQRNGRSLFADGRVLPPAQT+EDTSAAGALCRFSVSLT
Sbjct: 121 RRFGDGAFFGNAVDLEGVVSADQQRNGRSLFADGRVLPPAQTEEDTSAAGALCRFSVSLT 180

Query: 181 GICSGGAG 189
           GICSGGAG
Sbjct: 181 GICSGGAG 188

[Close]

BLAST of Carg04853 vs. NCBI nr
Match: XP_023520118.1 (uncharacterized protein At3g17950-like [Cucurbita pepo subsp. pepo] >XP_023520119.1 uncharacterized protein At3g17950-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 364.0 bits (933), Expect = 7.8e-97
Identity = 186/188 (98.94%), Postives = 188/188 (100.00%), Query Frame = 0


Query: 1   MLNPANDLLPPPSSPTNSSISSSDLDTESTGSFFHDRSTSLGTLMGVSFPAITFRVPSQN 60
           MLNPANDLLPPPSSPTNSSISSSDLDTESTGSFFHDRSTSLGTLMGVSFPAITFRVPSQN
Sbjct: 1   MLNPANDLLPPPSSPTNSSISSSDLDTESTGSFFHDRSTSLGTLMGVSFPAITFRVPSQN 60

Query: 61  RDQHAAATAAAGGGSRKSKKPKRKTTAAPALVADRKRRWWRLCRDDGVKPASLGEFLEVE 120
           RDQH+AATAAAGGGSRKSKKPKRKTTAAPALVADRKRRWWRLCRDDGVKPASLGEFLEVE
Sbjct: 61  RDQHSAATAAAGGGSRKSKKPKRKTTAAPALVADRKRRWWRLCRDDGVKPASLGEFLEVE 120

Query: 121 RRFGDGAFFGNAVDLEGVVSADQQRNGRSLFADGRVLPPAQTDEDTSAAGALCRFSVSLT 180
           RRFGDGAFFGNAVDLEGVVSADQQRNGRSLFADGRVLPPAQT+EDTSAAGALCRFSVSLT
Sbjct: 121 RRFGDGAFFGNAVDLEGVVSADQQRNGRSLFADGRVLPPAQTEEDTSAAGALCRFSVSLT 180

Query: 181 GICSGGAG 189
           GICSGGAG
Sbjct: 181 GICSGGAG 188

[Close]

BLAST of Carg04853 vs. NCBI nr
Match: XP_023001809.1 (uncharacterized protein At3g17950-like [Cucurbita maxima])

HSP 1 Score: 356.3 bits (913), Expect = 1.6e-94
Identity = 183/188 (97.34%), Postives = 184/188 (97.87%), Query Frame = 0


Query: 1   MLNPANDLLPPPSSPTNSSISSSDLDTESTGSFFHDRSTSLGTLMGVSFPAITFRVPSQN 60
           MLNPANDLLPPPSSPTNSSISSSDLDTESTGSFFHDRSTSLGTLMGVSFPAITFRVPSQN
Sbjct: 1   MLNPANDLLPPPSSPTNSSISSSDLDTESTGSFFHDRSTSLGTLMGVSFPAITFRVPSQN 60

Query: 61  RDQHAAATAAAGGGSRKSKKPKRKTTAAPALVADRKRRWWRLCRDDGVKPASLGEFLEVE 120
           RDQH AAT AAGGGSRKSKKPKRKTTAAPALVADRKRRWWRLCRDDGVKPASLGEFLEVE
Sbjct: 61  RDQHTAATNAAGGGSRKSKKPKRKTTAAPALVADRKRRWWRLCRDDGVKPASLGEFLEVE 120

Query: 121 RRFGDGAFFGNAVDLEGVVSADQQRNGRSLFADGRVLPPAQTDEDTSAAGALCRFSVSLT 180
           RRFGDGAFF NAVDLEGVVSADQQRNGR LFADGRVLPPAQT+EDTSAAGALCRFSVSLT
Sbjct: 121 RRFGDGAFFDNAVDLEGVVSADQQRNGRYLFADGRVLPPAQTEEDTSAAGALCRFSVSLT 180

Query: 181 GICSGGAG 189
           GICSGGAG
Sbjct: 181 GICSGGAG 188

[Close]

BLAST of Carg04853 vs. NCBI nr
Match: XP_016899568.1 (PREDICTED: uncharacterized protein At3g17950 isoform X2 [Cucumis melo] >XP_016899571.1 PREDICTED: uncharacterized protein At3g17950 isoform X2 [Cucumis melo])

HSP 1 Score: 352.1 bits (902), Expect = 3.1e-93
Identity = 179/188 (95.21%), Postives = 182/188 (96.81%), Query Frame = 0


Query: 1   MLNPANDLLPPPSSPTNSSISSSDLDTESTGSFFHDRSTSLGTLMGVSFPAITFRVPSQN 60
           MLNPANDLLPPPSSPTNSSISSSDLDTESTGSFFHDRSTSLGTLMGVSFPAITFRVPSQN
Sbjct: 1   MLNPANDLLPPPSSPTNSSISSSDLDTESTGSFFHDRSTSLGTLMGVSFPAITFRVPSQN 60

Query: 61  RDQHAAATAAAGGGSRKSKKPKRKTTAAPALVADRKRRWWRLCRDDGVKPASLGEFLEVE 120
           RDQH AAT  AGGGSRKSKK KRKTT APALVADRKRRWWRLCRDDGVKPASLGEFLEVE
Sbjct: 61  RDQHTAATVTAGGGSRKSKKTKRKTTTAPALVADRKRRWWRLCRDDGVKPASLGEFLEVE 120

Query: 121 RRFGDGAFFGNAVDLEGVVSADQQRNGRSLFADGRVLPPAQTDEDTSAAGALCRFSVSLT 180
           RRFGDGAF+GNAVDLEGVV+ADQQRNGRSLFADGRVLPPAQT+EDTSA GALCRFSVSLT
Sbjct: 121 RRFGDGAFYGNAVDLEGVVTADQQRNGRSLFADGRVLPPAQTEEDTSATGALCRFSVSLT 180

Query: 181 GICSGGAG 189
           GICSGGAG
Sbjct: 181 GICSGGAG 188

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BLAST of Carg04853 vs. ExPASy Swiss-Prot
Match: Q6DR24 (Uncharacterized protein At3g17950 OS=Arabidopsis thaliana OX=3702 GN=Y-3 PE=1 SV=1)

HSP 1 Score: 157.5 bits (397), Expect = 1.5e-37
Identity = 106/205 (51.71%), Postives = 128/205 (62.44%), Query Frame = 0


Query: 12  PSSPTNSSISSSDLDTESTGSFFHDRSTSLGTLMGVSFPA---ITFRVPSQNR-DQHAAA 71
           PSSPT SS+SSSDLDTESTGSFFHDRS +LGTLMG SF A   + FR  S+       A 
Sbjct: 7   PSSPTISSVSSSDLDTESTGSFFHDRSITLGTLMGFSFTATMPMPFRASSRRHVSPSVAI 66

Query: 72  TAAAGGGSRKSKKPKRKTTAAPALVADRKRRWWRLCRDD-------GV-------KPASL 131
           + A+   +R++ + KR  + +      R+R+WWR CRDD       G+       K +SL
Sbjct: 67  SRASSSNARRNHQRKRPPSNSAEPEPHRRRKWWRFCRDDDDDAAGNGIHRGTGDSKRSSL 126

Query: 132 GEFLEVERRFGDGAFFGNA-VDLEGVVSA---DQQ--RNGRSLFADGRVLPPAQ----TD 189
           GE+LEVERRFGD A + +A  +LE  V A   DQQ     R+LFADGRVLPPA     T 
Sbjct: 127 GEYLEVERRFGDEAVYNSAEAELEDAVVARYQDQQPVMGERALFADGRVLPPASAEVVTG 186

[Close]

BLAST of Carg04853 vs. ExPASy TrEMBL
Match: A0A6J1E8Y2 (uncharacterized protein At3g17950 OS=Cucurbita moschata OX=3662 GN=LOC111431726 PE=4 SV=1)

HSP 1 Score: 365.2 bits (936), Expect = 1.7e-97
Identity = 187/188 (99.47%), Postives = 188/188 (100.00%), Query Frame = 0


Query: 1   MLNPANDLLPPPSSPTNSSISSSDLDTESTGSFFHDRSTSLGTLMGVSFPAITFRVPSQN 60
           MLNPANDLLPPPSSPTNSSISSSDLDTESTGSFFHDRSTSLGTLMGVSFPAITFRVPSQN
Sbjct: 1   MLNPANDLLPPPSSPTNSSISSSDLDTESTGSFFHDRSTSLGTLMGVSFPAITFRVPSQN 60

Query: 61  RDQHAAATAAAGGGSRKSKKPKRKTTAAPALVADRKRRWWRLCRDDGVKPASLGEFLEVE 120
           RDQHAAATAAAGGGSRKSKKPKRKTTAAPALVADRKRRWWRLCRDDGVKPASLGEFLEVE
Sbjct: 61  RDQHAAATAAAGGGSRKSKKPKRKTTAAPALVADRKRRWWRLCRDDGVKPASLGEFLEVE 120

Query: 121 RRFGDGAFFGNAVDLEGVVSADQQRNGRSLFADGRVLPPAQTDEDTSAAGALCRFSVSLT 180
           RRFGDGAFFGNAVDLEGVVSADQQRNGRSLFADGRVLPPAQT+EDTSAAGALCRFSVSLT
Sbjct: 121 RRFGDGAFFGNAVDLEGVVSADQQRNGRSLFADGRVLPPAQTEEDTSAAGALCRFSVSLT 180

Query: 181 GICSGGAG 189
           GICSGGAG
Sbjct: 181 GICSGGAG 188

[Close]

BLAST of Carg04853 vs. ExPASy TrEMBL
Match: A0A6J1KNQ0 (uncharacterized protein At3g17950-like OS=Cucurbita maxima OX=3661 GN=LOC111495839 PE=4 SV=1)

HSP 1 Score: 356.3 bits (913), Expect = 7.9e-95
Identity = 183/188 (97.34%), Postives = 184/188 (97.87%), Query Frame = 0


Query: 1   MLNPANDLLPPPSSPTNSSISSSDLDTESTGSFFHDRSTSLGTLMGVSFPAITFRVPSQN 60
           MLNPANDLLPPPSSPTNSSISSSDLDTESTGSFFHDRSTSLGTLMGVSFPAITFRVPSQN
Sbjct: 1   MLNPANDLLPPPSSPTNSSISSSDLDTESTGSFFHDRSTSLGTLMGVSFPAITFRVPSQN 60

Query: 61  RDQHAAATAAAGGGSRKSKKPKRKTTAAPALVADRKRRWWRLCRDDGVKPASLGEFLEVE 120
           RDQH AAT AAGGGSRKSKKPKRKTTAAPALVADRKRRWWRLCRDDGVKPASLGEFLEVE
Sbjct: 61  RDQHTAATNAAGGGSRKSKKPKRKTTAAPALVADRKRRWWRLCRDDGVKPASLGEFLEVE 120

Query: 121 RRFGDGAFFGNAVDLEGVVSADQQRNGRSLFADGRVLPPAQTDEDTSAAGALCRFSVSLT 180
           RRFGDGAFF NAVDLEGVVSADQQRNGR LFADGRVLPPAQT+EDTSAAGALCRFSVSLT
Sbjct: 121 RRFGDGAFFDNAVDLEGVVSADQQRNGRYLFADGRVLPPAQTEEDTSAAGALCRFSVSLT 180

Query: 181 GICSGGAG 189
           GICSGGAG
Sbjct: 181 GICSGGAG 188

[Close]

BLAST of Carg04853 vs. ExPASy TrEMBL
Match: A0A1S4DUB1 (uncharacterized protein At3g17950 isoform X2 OS=Cucumis melo OX=3656 GN=LOC103503240 PE=4 SV=1)

HSP 1 Score: 352.1 bits (902), Expect = 1.5e-93
Identity = 179/188 (95.21%), Postives = 182/188 (96.81%), Query Frame = 0


Query: 1   MLNPANDLLPPPSSPTNSSISSSDLDTESTGSFFHDRSTSLGTLMGVSFPAITFRVPSQN 60
           MLNPANDLLPPPSSPTNSSISSSDLDTESTGSFFHDRSTSLGTLMGVSFPAITFRVPSQN
Sbjct: 1   MLNPANDLLPPPSSPTNSSISSSDLDTESTGSFFHDRSTSLGTLMGVSFPAITFRVPSQN 60

Query: 61  RDQHAAATAAAGGGSRKSKKPKRKTTAAPALVADRKRRWWRLCRDDGVKPASLGEFLEVE 120
           RDQH AAT  AGGGSRKSKK KRKTT APALVADRKRRWWRLCRDDGVKPASLGEFLEVE
Sbjct: 61  RDQHTAATVTAGGGSRKSKKTKRKTTTAPALVADRKRRWWRLCRDDGVKPASLGEFLEVE 120

Query: 121 RRFGDGAFFGNAVDLEGVVSADQQRNGRSLFADGRVLPPAQTDEDTSAAGALCRFSVSLT 180
           RRFGDGAF+GNAVDLEGVV+ADQQRNGRSLFADGRVLPPAQT+EDTSA GALCRFSVSLT
Sbjct: 121 RRFGDGAFYGNAVDLEGVVTADQQRNGRSLFADGRVLPPAQTEEDTSATGALCRFSVSLT 180

Query: 181 GICSGGAG 189
           GICSGGAG
Sbjct: 181 GICSGGAG 188

[Close]

BLAST of Carg04853 vs. ExPASy TrEMBL
Match: A0A5D3BLI7 (Putative nuclease HARBI1 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold248G002420 PE=3 SV=1)

HSP 1 Score: 352.1 bits (902), Expect = 1.5e-93
Identity = 179/188 (95.21%), Postives = 182/188 (96.81%), Query Frame = 0


Query: 1   MLNPANDLLPPPSSPTNSSISSSDLDTESTGSFFHDRSTSLGTLMGVSFPAITFRVPSQN 60
           MLNPANDLLPPPSSPTNSSISSSDLDTESTGSFFHDRSTSLGTLMGVSFPAITFRVPSQN
Sbjct: 486 MLNPANDLLPPPSSPTNSSISSSDLDTESTGSFFHDRSTSLGTLMGVSFPAITFRVPSQN 545

Query: 61  RDQHAAATAAAGGGSRKSKKPKRKTTAAPALVADRKRRWWRLCRDDGVKPASLGEFLEVE 120
           RDQH AAT  AGGGSRKSKK KRKTT APALVADRKRRWWRLCRDDGVKPASLGEFLEVE
Sbjct: 546 RDQHTAATVTAGGGSRKSKKTKRKTTTAPALVADRKRRWWRLCRDDGVKPASLGEFLEVE 605

Query: 121 RRFGDGAFFGNAVDLEGVVSADQQRNGRSLFADGRVLPPAQTDEDTSAAGALCRFSVSLT 180
           RRFGDGAF+GNAVDLEGVV+ADQQRNGRSLFADGRVLPPAQT+EDTSA GALCRFSVSLT
Sbjct: 606 RRFGDGAFYGNAVDLEGVVTADQQRNGRSLFADGRVLPPAQTEEDTSATGALCRFSVSLT 665

Query: 181 GICSGGAG 189
           GICSGGAG
Sbjct: 666 GICSGGAG 673

[Close]

BLAST of Carg04853 vs. ExPASy TrEMBL
Match: A0A1S3CPP8 (uncharacterized protein At3g17950 isoform X1 OS=Cucumis melo OX=3656 GN=LOC103503240 PE=4 SV=1)

HSP 1 Score: 352.1 bits (902), Expect = 1.5e-93
Identity = 179/188 (95.21%), Postives = 182/188 (96.81%), Query Frame = 0


Query: 1   MLNPANDLLPPPSSPTNSSISSSDLDTESTGSFFHDRSTSLGTLMGVSFPAITFRVPSQN 60
           MLNPANDLLPPPSSPTNSSISSSDLDTESTGSFFHDRSTSLGTLMGVSFPAITFRVPSQN
Sbjct: 13  MLNPANDLLPPPSSPTNSSISSSDLDTESTGSFFHDRSTSLGTLMGVSFPAITFRVPSQN 72

Query: 61  RDQHAAATAAAGGGSRKSKKPKRKTTAAPALVADRKRRWWRLCRDDGVKPASLGEFLEVE 120
           RDQH AAT  AGGGSRKSKK KRKTT APALVADRKRRWWRLCRDDGVKPASLGEFLEVE
Sbjct: 73  RDQHTAATVTAGGGSRKSKKTKRKTTTAPALVADRKRRWWRLCRDDGVKPASLGEFLEVE 132

Query: 121 RRFGDGAFFGNAVDLEGVVSADQQRNGRSLFADGRVLPPAQTDEDTSAAGALCRFSVSLT 180
           RRFGDGAF+GNAVDLEGVV+ADQQRNGRSLFADGRVLPPAQT+EDTSA GALCRFSVSLT
Sbjct: 133 RRFGDGAFYGNAVDLEGVVTADQQRNGRSLFADGRVLPPAQTEEDTSATGALCRFSVSLT 192

Query: 181 GICSGGAG 189
           GICSGGAG
Sbjct: 193 GICSGGAG 200

[Close]

BLAST of Carg04853 vs. TAIR 10
Match: AT3G17950.1 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 17 plant structures; EXPRESSED DURING: 10 growth stages; Has 63 Blast hits to 63 proteins in 12 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 63; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 157.5 bits (397), Expect = 1.0e-38
Identity = 106/205 (51.71%), Postives = 128/205 (62.44%), Query Frame = 0


Query: 12  PSSPTNSSISSSDLDTESTGSFFHDRSTSLGTLMGVSFPA---ITFRVPSQNR-DQHAAA 71
           PSSPT SS+SSSDLDTESTGSFFHDRS +LGTLMG SF A   + FR  S+       A 
Sbjct: 7   PSSPTISSVSSSDLDTESTGSFFHDRSITLGTLMGFSFTATMPMPFRASSRRHVSPSVAI 66

Query: 72  TAAAGGGSRKSKKPKRKTTAAPALVADRKRRWWRLCRDD-------GV-------KPASL 131
           + A+   +R++ + KR  + +      R+R+WWR CRDD       G+       K +SL
Sbjct: 67  SRASSSNARRNHQRKRPPSNSAEPEPHRRRKWWRFCRDDDDDAAGNGIHRGTGDSKRSSL 126

Query: 132 GEFLEVERRFGDGAFFGNA-VDLEGVVSA---DQQ--RNGRSLFADGRVLPPAQ----TD 189
           GE+LEVERRFGD A + +A  +LE  V A   DQQ     R+LFADGRVLPPA     T 
Sbjct: 127 GEYLEVERRFGDEAVYNSAEAELEDAVVARYQDQQPVMGERALFADGRVLPPASAEVVTG 186

[Close]

BLAST of Carg04853 vs. TAIR 10
Match: AT3G17950.2 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 17 plant structures; EXPRESSED DURING: 10 growth stages; Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). )

HSP 1 Score: 106.3 bits (264), Expect = 2.7e-23
Identity = 77/172 (44.77%), Postives = 97/172 (56.40%), Query Frame = 0


Query: 45  MGVSFPA---ITFRVPSQNR-DQHAAATAAAGGGSRKSKKPKRKTTAAPALVADRKRRWW 104
           MG SF A   + FR  S+       A + A+   +R++ + KR  + +      R+R+WW
Sbjct: 1   MGFSFTATMPMPFRASSRRHVSPSVAISRASSSNARRNHQRKRPPSNSAEPEPHRRRKWW 60

Query: 105 RLCRDD-------GV-------KPASLGEFLEVERRFGDGAFFGNA-VDLEGVVSA---D 164
           R CRDD       G+       K +SLGE+LEVERRFGD A + +A  +LE  V A   D
Sbjct: 61  RFCRDDDDDAAGNGIHRGTGDSKRSSLGEYLEVERRFGDEAVYNSAEAELEDAVVARYQD 120

Query: 165 QQ--RNGRSLFADGRVLPPAQ----TDEDTSAAGALCRFSVSLTGICSGGAG 189
           QQ     R+LFADGRVLPPA     T E T  A +LCRF VSLTGICSGG G
Sbjct: 121 QQPVMGERALFADGRVLPPASAEVVTGEGTPVATSLCRFPVSLTGICSGGGG 172

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BLAST of Carg04853 vs. TAIR 10
Match: AT5G02440.1 (unknown protein; Has 71 Blast hits to 71 proteins in 12 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 71; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 45.8 bits (107), Expect = 4.4e-05
Identity = 29/55 (52.73%), Postives = 37/55 (67.27%), Query Frame = 0


Query: 14  SPTNSSISSSDLDTESTGSFFHDRSTSLGTLMGV-SFPAITFRVPSQNRDQHAAA 68
           SP+ SS SSSDLD++S GSFF DRS +LG L+G+ SF  ++ R      DQ  AA
Sbjct: 47  SPSPSSQSSSDLDSQSMGSFFRDRSYTLGNLIGISSFLELSRRSNRTRNDQTGAA 101

The following BLAST results are available for this feature:

BLAST of Carg04853 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG6584313.1	1.2e-97	100.00	hypothetical protein SDJN03_20245, partial [Cucurbita argyrosperma subsp. sorori...	[more]
XP_022924210.1	3.5e-97	99.47	uncharacterized protein At3g17950 [Cucurbita moschata] >XP_022924211.1 uncharact...	[more]
XP_023520118.1	7.8e-97	98.94	uncharacterized protein At3g17950-like [Cucurbita pepo subsp. pepo] >XP_02352011...	[more]
XP_023001809.1	1.6e-94	97.34	uncharacterized protein At3g17950-like [Cucurbita maxima]	[more]
XP_016899568.1	3.1e-93	95.21	PREDICTED: uncharacterized protein At3g17950 isoform X2 [Cucumis melo] >XP_01689...	[more]

BLAST of Carg04853 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q6DR24	1.5e-37	51.71	Uncharacterized protein At3g17950 OS=Arabidopsis thaliana OX=3702 GN=Y-3 PE=1 SV...	[more]

BLAST of Carg04853 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1E8Y2	1.7e-97	99.47	uncharacterized protein At3g17950 OS=Cucurbita moschata OX=3662 GN=LOC111431726 ...	[more]
A0A6J1KNQ0	7.9e-95	97.34	uncharacterized protein At3g17950-like OS=Cucurbita maxima OX=3661 GN=LOC1114958...	[more]
A0A1S4DUB1	1.5e-93	95.21	uncharacterized protein At3g17950 isoform X2 OS=Cucumis melo OX=3656 GN=LOC10350...	[more]
A0A5D3BLI7	1.5e-93	95.21	Putative nuclease HARBI1 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffol...	[more]
A0A1S3CPP8	1.5e-93	95.21	uncharacterized protein At3g17950 isoform X1 OS=Cucumis melo OX=3656 GN=LOC10350...	[more]

BLAST of Carg04853 vs. TAIR 10


Match Name	E-value	Identity	Description
AT3G17950.1	1.0e-38	51.71	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biologic...	[more]
AT3G17950.2	2.7e-23	44.77	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biologic...	[more]
AT5G02440.1	4.4e-05	52.73	unknown protein; Has 71 Blast hits to 71 proteins in 12 species: Archae - 0; Bac...	[more]

InterPro

Analysis Name: InterPro Annotations of Silver-seed gourd (SMH-JMG-627) v2
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 59..90
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 12..34
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..34
None	No IPR available	PANTHER	PTHR33544:SF15	BNAANNG11020D PROTEIN	coord: 1..188
IPR040344	Uncharacterized protein At3g17950-like	PANTHER	PTHR33544	FAMILY NOT NAMED	coord: 1..188

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Carg04853-RA	Carg04853-RA	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
molecular_function	GO:0046872	metal ion binding