Carg04783 (gene) Silver-seed gourd (SMH-JMG-627) v2

Overview
NameCarg04783
Typegene
OrganismCucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
DescriptionUnknown protein
LocationCarg_Chr13: 9309796 .. 9310202 (+)
RNA-Seq ExpressionCarg04783
SyntenyCarg04783
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGTTTTGTTTGTAAGCGGCAATTCGAAGCAGATTCTCTTCTTCTTCTTCTTCATTTTACCAATTCTTCTCTGTAATTCTAGTTTACTATCTTCACTGCTTTTCAATGGCGCCATAGTTTCTGTGTTTGCGTTCAAGTTCTAAATTCAGTTCAGTTCAGAAGAGTCACTTTGTCGAAGCCTGTGAAAATCTTCGCTCTTATTAGATTCTTGGAGAAACTTATGGTACTATTCTCTCCTAATTCATTCGATTTTTTTTTTTTTTTTAATTTTATTGTTATTGTTTTCTGGATTTGTTCTGCTTCATCTTGTTCTTCTACTGTTGTTGCTGAAATTGAAGAATTGTTTTCTCCAGGATGAGAAGCATGTTTTTCTGGAGGAACAGTCAGAATTTTATGAAGTATTATAA

mRNA sequence

ATGTTTTCGGCAATTCGAAGCAGATTCTCTTCTTCTTCTTCTTCATTTTACCAATTCTTCTCTTTTACTATCTTCACTGCTTTTCAATGGCGCCATAGTTTCTGTGTTTGCGTTCAAGTTCTAAATTCAGTTCAGTTCAGAAGAGTCACTTTGTCGAAGCCTGTGAAAATCTTCGCTCTTATTAGATTCTTGGAGAAACTTATGGATGAGAAGCATGTTTTTCTGGAGGAACAGTCAGAATTTTATGAAGTATTATAA

Coding sequence (CDS)

ATGTTTTCGGCAATTCGAAGCAGATTCTCTTCTTCTTCTTCTTCATTTTACCAATTCTTCTCTTTTACTATCTTCACTGCTTTTCAATGGCGCCATAGTTTCTGTGTTTGCGTTCAAGTTCTAAATTCAGTTCAGTTCAGAAGAGTCACTTTGTCGAAGCCTGTGAAAATCTTCGCTCTTATTAGATTCTTGGAGAAACTTATGGATGAGAAGCATGTTTTTCTGGAGGAACAGTCAGAATTTTATGAAGTATTATAA

Protein sequence

MFSAIRSRFSSSSSSFYQFFSFTIFTAFQWRHSFCVCVQVLNSVQFRRVTLSKPVKIFALIRFLEKLMDEKHVFLEEQSEFYEVL
Homology
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BLAST of Carg04783 vs. NCBI nr
Match: KAG6584387.1 (PHD and RING finger domain-containing protein 1, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 67.0 bits (162), Expect = 8.9e-08
Identity = 38/56 (67.86%), Postives = 46/56 (82.14%), Query Frame = 0 

Query: 31  RHSFCVCVQ-VLNSVQFRRVTLSKPVKIFALIRFLEKLMDEKHVFLEEQSEFYEVL 86
           R  F V V+ V+N++    +++ KPVKIFALIRFLEKLMDEKHVF+EEQSEFYEVL
Sbjct: 587 RECFLVYVKDVVNAL----ISVQKPVKIFALIRFLEKLMDEKHVFMEEQSEFYEVL 638

The following BLAST results are available for this feature:
BLAST of Carg04783 vs. NCBI nr
Match NameE-valueIdentityDescription
KAG6584387.18.9e-0867.86PHD and RING finger domain-containing protein 1, partial [Cucurbita argyrosperma... [more]
BLAST of Carg04783 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of Carg04783 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of Carg04783 vs. NCBI nr
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Carg04783-RACarg04783-RAmRNA