Carg04775 (gene) Silver-seed gourd (SMH-JMG-627) v2

Overview
NameCarg04775
Typegene
OrganismCucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
DescriptionUnknown protein
LocationCarg_Chr13: 9343138 .. 9346595 (-)
RNA-Seq ExpressionCarg04775
SyntenyCarg04775
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGTATCCGATTCAGATTATCGATACTTCTCGGAACATTTCTACTGATGTTAGCTACCTTCCAATGGTACCGGCTTAGAATCTGTTTGGAAGCTAAGAGTATTGGTAGAGAATGTAGTATTATGATTCACTTATCAGTGATCTTAGCCACAGTTAAAGAAGATTTATTTCATATGATTTCTATAATTTGATGAGCATTATCTATCTATTTGATCTGGGATTGTTGCGTTCTCATCTCGAGTAAACTCCAAGTTTCGTACTCGATTTTTGAAACAAAGTACTAATGATTTACATCTAAATCCAAATCCTCGTTGTTAAAATGAACTGATCTACCTTAAAAACTATCCAAGCAATGGAAGCAGTTCTAGGGACAAGAACCTCTATTGTAGGCATATGCAATGAGACATTAAGCACAAGTGTAGCATCTTAATCAGAGGGCAGGTCTCTTAGGACTACAATAACCATATGAACTACATTTTACAACGAAAATTTTTCGGGATTCGACGAGTTAGTCTCAAAATGAAAGCATCGGTATTATAGAAACAGCAGCAGAATCAGAAAAGAAGACAAGGTTAGAGGTGTACTAGATAGGAAGATTATACAACAATTTATTCTCTCCTTGGCTAACAAAATGTATCATTGACATAGGTCCAATAGGTTCAAGTTTCAACTTCACAACAGCCTTCACGAAGTCTCCTAGGCCGAGTCCTGTTTCAGAAGACGTGTTCGGTTTCAGTCGAAACTATTAAAAAATCTTTCATATGATGTATAATGATACCAGAAATAGAACATGTTGTAGCATTCTCCCACTAACAGTGATGCAACCGCTTTTCTTGTCTGGCTAAGACCATGAAAAGCAAGTACTTTCTAGATTACTTTTAATTTGAGCTCTAACTTTATTGATCTCATTGATTCCGTCAGTATAATGTTCTTATTTATGTACCTGCATGGAGTGCCTTTGATCTTCAACTCGATGGAGTTGTGATGAAAGTTGTAGTAAGTCGATAGTTGGAGTGTGTTCATACGAAAGATTAGCCTTGGAATTCGCCAAACCCGATCTATGAAGAACCCCATCAGGAATCTGAAATGCGACAGTACGATCACACGTCAATATCGGACCCATTTGAGCTTCACTCATCCCCGAGGCAAACTTACTCGAAATCCCAGTCGAAGAAGCCTGTGAGCTCACTCCCATGAGCTTTTCAGAGAGTTCGCTCATGCTGTAATTCGATGGACTCTCGGACATGACGAAAGCACGAGGAATGTGAACTATAGATGAATGGTTCGATGCAGTTTGTGATTGAGATGACAGAAGAGAGAGAGCACAACCAGAGTCTGGAATTCCAGAAAGTCCTTGGATGGTTGATGCTGCATCATAAACTCCAAAGTCTTCGCTTGATAAGGTAGTGTGGTGGAACAAAGGATGTGTTGTATCAATATGAGGACCTCCCACATTATGGGAATACTGGCAAGTTGTGTCGCATAACATGTTGTTTAATGAAGGAGCTGTACTAGTTCCATGTTCTTGAAAAGGAGGAATCTGTACTTCAAAATCATAGGGAAGCAATGGAGATTTCACATTCAAATGCCTGTTGCTCAATGAAGTTGCAGATATAGAATTATAGTCATTCTTGGCCTCAACTAGAACACGCTTACACCAATCATTGTCTCCAAGCTTCTCTGGATAATAAAGACCACTAGACAATATATCTTTGCAGATAAATGAAGTTGCTGTCGGAGTTTTCTCCTGAAATCTGCTGTCCCCAATACCTGAAATTTTCAACCAGTGGTGATTGTGGTTAACAAATATAGTGAATCAATGAAGATTTTAAAAGATACTGAAAACAGCATAATCAGATTCAAAGATACACACAGATTACCCCAAACAAATAGATGAAACAGGTTAACTAGATGTTGAAGACATTAAAACAGCTAGGCAATCAAGCAGCACATGTTCAGGATGGATGGTTGTCAGGAATCTTTGACTTCGAACCTCTCGTGTCATGTTACTGGAAAGATTTAAGATATTCCCATTGTTAATGGATATTGCCCGCTTTGGCCTATTACGTATTGTCGTCAACCTCATGGTTTTAAAATGCGTCTTCTAAGGAGAGGTTTCCACACCAAGGGATGTTTCGTTCCCCACTTCAACCGATGTGAGATCTCACAATCCACCCTCTTTGGGGACCAGTGTCCTCGCTGGCACACCGCCTGGTGTCTGGCTCTAATACCGTTTGTAACAGCTCAAACCCATCGCTAGCATATATTGTCTCCTTTGGCCTGTTACGTATCGCTGTCAGCCTCACGATTTTAAAACGAGTCTGCTAGGGAGAGGTTTCCACACCCTTATAAGGAATGTTTCGTTCCCCTCTCCAACCAATATGGGATCTCACAATCCACCTCCCTTGGGGGTCCAGCGTCCTCGCTGGCACACCGCCTGGTGTCTGTCTCTAATACCATTTATAACAGCCCAAACCCACTGCTAATAGACATTGTCCGTTTTGGCCCGTTACGTATCGTTGTCAGCCTCACGATTTTAAAACGCATTGCTAGGAAGAGGCTTCCACACCCTTATAAGGAATACTTTGTTCCCCTCTCCAACCGATATGAGATCTCACAATCCACCCCCCCCCCCAGGGGGCCTAGCGTCCTCGCTGGCACACCGCCCGGTGTCTGGCTCTGATACCATTTGCAACAATCCAATCCCACCGCTAACAGATATTGTTTGCTTTGGCCCGTTACATATTGCCCATAGTTTTAAAATGCATCTACTAGGGAGAGGAGAGAGGTTTCCACACCCTCATAAAGAATGTTGCGTTCCCCTCTCGAACCAACGTGGGATTTCACAACTATTTACACCAAATGGATGCATGTTTTCCAAAAAAAGAATTTTGAAGACTTGCACCTCTTTTTTCTGAGTTTGATCTTATCAAACCCAGTACGGTATGAGATTGATATAGATAAAGTCCTATTATGTTGCTAGGTGCTAGTATCAGATGACATTACGTTCACCCTCATGGCAACATAAATGGCAAAATTCATCTGCCAAGTACCAAACAACACTCAACAAAGTTCAAATAAACAGCTATAACACTTTACTTTCACTTCTTTAAATGTGGTTGTTGGCTTGGATGATCCAAATGAAGTAATAAACAAATAACCATCAAAATTTCTTCAACCCAGGGGAAAAATCATTAGAAGGTTCTCCAGAAATGATTAACAAGAAAGGCTAAAAGGAAGGGATCAACTCTGAAAAAGTTCATAGTTCATAATTCTTCATATACTTTTAATCTACAATGAACATAGAGAAATAATACCATTATATGGCTGAAGCAATCTCTGAGCCCTTCCCGAGTGAAAACTGACTTGAGGCTTTCTTCTGCGTTCATTGTGGCCTGCAAGCCTTTTACGACAGCTGCGTTTACCATCATCAAATTCAACCAGCAAATGAAACCTGCA

mRNA sequence

ATGTATCCGATTCAGATTATCGATACTTCTCGGAACATTTCTACTGATGTTAGCTACCTTCCAATGCCTTGGAATTCGCCAAACCCGATCTATGAAGAACCCCATCAGGAATCTGAAATGCGACAGTACGATCACACGTCAATATCGGACCCATTTGAGCTTCACTCATCCCCGAGGCAAACTTACTCGAAATCCCAGTCGAAGAAGCCTAGAAATAATACCATTATATGGCTGAAGCAATCTCTGAGCCCTTCCCGAGTGAAAACTGACTTGAGGCTTTCTTCTGCGTTCATTGTGGCCTGCAAGCCTTTTACGACAGCTGCGTTTACCATCATCAAATTCAACCAGCAAATGAAACCTGCA

Coding sequence (CDS)

ATGTATCCGATTCAGATTATCGATACTTCTCGGAACATTTCTACTGATGTTAGCTACCTTCCAATGCCTTGGAATTCGCCAAACCCGATCTATGAAGAACCCCATCAGGAATCTGAAATGCGACAGTACGATCACACGTCAATATCGGACCCATTTGAGCTTCACTCATCCCCGAGGCAAACTTACTCGAAATCCCAGTCGAAGAAGCCTAGAAATAATACCATTATATGGCTGAAGCAATCTCTGAGCCCTTCCCGAGTGAAAACTGACTTGAGGCTTTCTTCTGCGTTCATTGTGGCCTGCAAGCCTTTTACGACAGCTGCGTTTACCATCATCAAATTCAACCAGCAAATGAAACCTGCA

Protein sequence

MYPIQIIDTSRNISTDVSYLPMPWNSPNPIYEEPHQESEMRQYDHTSISDPFELHSSPRQTYSKSQSKKPRNNTIIWLKQSLSPSRVKTDLRLSSAFIVACKPFTTAAFTIIKFNQQMKPA
Homology
[Close]
BLAST of Carg04775 vs. NCBI nr
Match: KAG7019981.1 (hypothetical protein SDJN02_18949, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 243.8 bits (621), Expect = 7.6e-61
Identity = 121/121 (100.00%), Postives = 121/121 (100.00%), Query Frame = 0 

Query: 1   MYPIQIIDTSRNISTDVSYLPMPWNSPNPIYEEPHQESEMRQYDHTSISDPFELHSSPRQ 60
           MYPIQIIDTSRNISTDVSYLPMPWNSPNPIYEEPHQESEMRQYDHTSISDPFELHSSPRQ
Sbjct: 1   MYPIQIIDTSRNISTDVSYLPMPWNSPNPIYEEPHQESEMRQYDHTSISDPFELHSSPRQ 60

Query: 61  TYSKSQSKKPRNNTIIWLKQSLSPSRVKTDLRLSSAFIVACKPFTTAAFTIIKFNQQMKP 120
           TYSKSQSKKPRNNTIIWLKQSLSPSRVKTDLRLSSAFIVACKPFTTAAFTIIKFNQQMKP
Sbjct: 61  TYSKSQSKKPRNNTIIWLKQSLSPSRVKTDLRLSSAFIVACKPFTTAAFTIIKFNQQMKP 120

Query: 121 A 122
           A
Sbjct: 121 A 121

The following BLAST results are available for this feature:
BLAST of Carg04775 vs. NCBI nr
Match NameE-valueIdentityDescription
KAG7019981.17.6e-61100.00hypothetical protein SDJN02_18949, partial [Cucurbita argyrosperma subsp. argyro... [more]
BLAST of Carg04775 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of Carg04775 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of Carg04775 vs. NCBI nr
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Silver-seed gourd (SMH-JMG-627) v2
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 34..48
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 49..70
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 26..70

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Carg04775-RACarg04775-RAmRNA