Carg04752 (gene) Silver-seed gourd (SMH-JMG-627) v2

Overview
NameCarg04752
Typegene
OrganismCucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
DescriptionUnknown protein
LocationCarg_Chr13: 9480353 .. 9480663 (+)
RNA-Seq ExpressionCarg04752
SyntenyCarg04752
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGCCTACGAGTTGGGCTCCGGTCGTCTCAGGTGATCCAGAAACAGTTTAGATTTAATTGGGCTTGGGCCTTATTAATCGGACCAGCCCAATGATCTTTATTCTGAAGGCGGGAAAGCATTTTACACGGCAAAAATAATTGGGAAGAATATCATATTGAAAGTCACGTGTAAAAACTCATTATTGGGAGGGAGAAAAACATGGATTCTGAGTCCAGTGGTAATCGGGGCTCAGATTCGGACCCAAATCAACTATATCCATCCCGAATCTGAGGCTCGGTCCGAACCTCAGTTCTGTGACCCAGTTCGTTGA

mRNA sequence

ATGCCTACGAGTTGGGCTCCGGTCGTCTCAGGCGGGAAAGCATTTTACACGGCAAAAATAATTGGGAAGAATATCATATTGAAAGTCACGTGTAAAAACTCATTATTGGGAGGGAGAAAAACATGGATTCTGAGTCCAGTGGTAATCGGGGCTCAGATTCGGACCCAAATCAACTATATCCATCCCGAATCTGAGGCTCGGTCCGAACCTCAGTTCTGTGACCCAGTTCGTTGA

Coding sequence (CDS)

ATGCCTACGAGTTGGGCTCCGGTCGTCTCAGGCGGGAAAGCATTTTACACGGCAAAAATAATTGGGAAGAATATCATATTGAAAGTCACGTGTAAAAACTCATTATTGGGAGGGAGAAAAACATGGATTCTGAGTCCAGTGGTAATCGGGGCTCAGATTCGGACCCAAATCAACTATATCCATCCCGAATCTGAGGCTCGGTCCGAACCTCAGTTCTGTGACCCAGTTCGTTGA

Protein sequence

MPTSWAPVVSGGKAFYTAKIIGKNIILKVTCKNSLLGGRKTWILSPVVIGAQIRTQINYIHPESEARSEPQFCDPVR
Homology
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BLAST of Carg04752 vs. NCBI nr
Match: KAG7020004.1 (hypothetical protein SDJN02_18972, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 162.5 bits (410), Expect = 1.4e-36
Identity = 77/77 (100.00%), Postives = 77/77 (100.00%), Query Frame = 0 

Query: 1  MPTSWAPVVSGGKAFYTAKIIGKNIILKVTCKNSLLGGRKTWILSPVVIGAQIRTQINYI 60
          MPTSWAPVVSGGKAFYTAKIIGKNIILKVTCKNSLLGGRKTWILSPVVIGAQIRTQINYI
Sbjct: 1  MPTSWAPVVSGGKAFYTAKIIGKNIILKVTCKNSLLGGRKTWILSPVVIGAQIRTQINYI 60

Query: 61 HPESEARSEPQFCDPVR 78
          HPESEARSEPQFCDPVR
Sbjct: 61 HPESEARSEPQFCDPVR 77

The following BLAST results are available for this feature:
BLAST of Carg04752 vs. NCBI nr
Match NameE-valueIdentityDescription
KAG7020004.11.4e-36100.00hypothetical protein SDJN02_18972, partial [Cucurbita argyrosperma subsp. argyro... [more]
BLAST of Carg04752 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of Carg04752 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of Carg04752 vs. NCBI nr
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Carg04752-RACarg04752-RAmRNA