Carg04704 (gene) Silver-seed gourd (SMH-JMG-627) v2

Overview


Name	Carg04704
Type	gene
Organism	Cucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
Description	Disulfide bond formation protein B 2, putative
Location	Carg_Chr13: 9707849 .. 9708366 (-)
RNA-Seq Expression	Carg04704
Synteny	Carg04704

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCAGCACCTACTCATTTCCTTCGTTTACTTGTCATATTCTTGGGACTTCACTACAACCTTCTCTCTTCCAATGCTGTCCCATCTTCGAGTAACCCTCTCAAACCACTCTCCTTCCTCTTCTTTTTCTTTCTTCTTCTTACAAAATGAACTACAAAATGCTTCTGATCTCATTCTGTAGGAAGTGTCCGCCTCATGCATGCATCCATTCAACATCTTCAAGTTTCAAGCAACACCCACATGGTATATTACATTACCCCCATCAACATTTTACTTTTTCTCACCTATTCTGTGTTGGATCCTTTCTTCTCTCTTTACTACCGATTGACTTCTTCCTAACTTATCTGTTTATGCTCTTGGGATTTAAACATGGAAGGTTTCTGTTCGTTCAGGTGATTGCAAACCAAGATAAAGTGAGGCATGGAAGAATGAGTTTGGAACTAAATGACTATCCAGGATCCGGAGCCAACAATCGTCACACACCAGGGCCACAGTTTCGAGGCTGCGCTGATTGTTGA

mRNA sequence

ATGGCAGCACCTACTCATTTCCTTCGTTTACTTGTCATATTCTTGGGACTTCACTACAACCTTCTCTCTTCCAATGCTGTCCCATCTTCGAGAAGTGTCCGCCTCATGCATGCATCCATTCAACATCTTCAAGTTTCAAGCAACACCCACATGGTGATTGCAAACCAAGATAAAGTGAGGCATGGAAGAATGAGTTTGGAACTAAATGACTATCCAGGATCCGGAGCCAACAATCGTCACACACCAGGGCCACAGTTTCGAGGCTGCGCTGATTGTTGA

Coding sequence (CDS)

ATGGCAGCACCTACTCATTTCCTTCGTTTACTTGTCATATTCTTGGGACTTCACTACAACCTTCTCTCTTCCAATGCTGTCCCATCTTCGAGAAGTGTCCGCCTCATGCATGCATCCATTCAACATCTTCAAGTTTCAAGCAACACCCACATGGTGATTGCAAACCAAGATAAAGTGAGGCATGGAAGAATGAGTTTGGAACTAAATGACTATCCAGGATCCGGAGCCAACAATCGTCACACACCAGGGCCACAGTTTCGAGGCTGCGCTGATTGTTGA

Protein sequence

MAAPTHFLRLLVIFLGLHYNLLSSNAVPSSRSVRLMHASIQHLQVSSNTHMVIANQDKVRHGRMSLELNDYPGSGANNRHTPGPQFRGCADC

Homology

[Close]

BLAST of Carg04704 vs. NCBI nr
Match: KAG7020052.1 (hypothetical protein SDJN02_19020, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 188.7 bits (478), Expect = 2.2e-44
Identity = 92/92 (100.00%), Postives = 92/92 (100.00%), Query Frame = 0


Query: 1  MAAPTHFLRLLVIFLGLHYNLLSSNAVPSSRSVRLMHASIQHLQVSSNTHMVIANQDKVR 60
          MAAPTHFLRLLVIFLGLHYNLLSSNAVPSSRSVRLMHASIQHLQVSSNTHMVIANQDKVR
Sbjct: 1  MAAPTHFLRLLVIFLGLHYNLLSSNAVPSSRSVRLMHASIQHLQVSSNTHMVIANQDKVR 60

Query: 61 HGRMSLELNDYPGSGANNRHTPGPQFRGCADC 93
          HGRMSLELNDYPGSGANNRHTPGPQFRGCADC
Sbjct: 61 HGRMSLELNDYPGSGANNRHTPGPQFRGCADC 92

[Close]

BLAST of Carg04704 vs. NCBI nr
Match: XP_023519471.1 (uncharacterized protein LOC111782875 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 181.0 bits (458), Expect = 4.6e-42
Identity = 88/92 (95.65%), Postives = 90/92 (97.83%), Query Frame = 0


Query: 1  MAAPTHFLRLLVIFLGLHYNLLSSNAVPSSRSVRLMHASIQHLQVSSNTHMVIANQDKVR 60
          MAAPTHFLRLLVIFLGLHYNLLSSNAVPSSRSV LMHAS QHLQVSSNTHMVIANQ+KVR
Sbjct: 1  MAAPTHFLRLLVIFLGLHYNLLSSNAVPSSRSVSLMHASNQHLQVSSNTHMVIANQEKVR 60

Query: 61 HGRMSLELNDYPGSGANNRHTPGPQFRGCADC 93
          HGRMS+ELNDYPGSGANNRHTPGPQFRGCADC
Sbjct: 61 HGRMSVELNDYPGSGANNRHTPGPQFRGCADC 92

[Close]

BLAST of Carg04704 vs. NCBI nr
Match: XP_023001352.1 (uncharacterized protein LOC111495510 [Cucurbita maxima])

HSP 1 Score: 174.5 bits (441), Expect = 4.3e-40
Identity = 84/92 (91.30%), Postives = 89/92 (96.74%), Query Frame = 0


Query: 1  MAAPTHFLRLLVIFLGLHYNLLSSNAVPSSRSVRLMHASIQHLQVSSNTHMVIANQDKVR 60
          MAAPTHFLRLLVIFLGLHYNLLSSNAVPSSRS+ LMHAS Q+ QVSSNTHMVIANQ+KVR
Sbjct: 1  MAAPTHFLRLLVIFLGLHYNLLSSNAVPSSRSISLMHASNQYPQVSSNTHMVIANQEKVR 60

Query: 61 HGRMSLELNDYPGSGANNRHTPGPQFRGCADC 93
          HGRM++ELNDYPGSGANNRHTPGPQFRGCADC
Sbjct: 61 HGRMTVELNDYPGSGANNRHTPGPQFRGCADC 92

[Close]

BLAST of Carg04704 vs. NCBI nr
Match: XP_008442734.1 (PREDICTED: uncharacterized protein LOC103486492 [Cucumis melo] >TYJ98895.1 putative Disulfide bond formation protein B 2 [Cucumis melo var. makuwa])

HSP 1 Score: 134.0 bits (336), Expect = 6.4e-28
Identity = 67/92 (72.83%), Postives = 76/92 (82.61%), Query Frame = 0


Query: 1  MAAPTHFLRLLVIFLGLHYNLLSSNAVPSSRSVRLMHASIQHLQVSSNTHMVIANQDKVR 60
          MAA +HFLRLLVIFLGL YNLL SNAVP+SRSV L+H S+  L VSS+THMV   +++  
Sbjct: 1  MAAASHFLRLLVIFLGL-YNLLCSNAVPTSRSVSLLHGSLPFLHVSSDTHMVTKTEEEES 60

Query: 61 HGRMSLELNDYPGSGANNRHTPGPQFRGCADC 93
          HGRM + LNDYPGSGANNRHTP PQFRGCADC
Sbjct: 61 HGRMVVALNDYPGSGANNRHTPRPQFRGCADC 91

[Close]

BLAST of Carg04704 vs. NCBI nr
Match: KAA0036087.1 (putative Disulfide bond formation protein B 2 [Cucumis melo var. makuwa])

HSP 1 Score: 132.9 bits (333), Expect = 1.4e-27
Identity = 66/92 (71.74%), Postives = 76/92 (82.61%), Query Frame = 0


Query: 1  MAAPTHFLRLLVIFLGLHYNLLSSNAVPSSRSVRLMHASIQHLQVSSNTHMVIANQDKVR 60
          MAA +HFLRLLVIFLGL YNLL SNAVP+SRSV L+H S+  L VS++THMV   +++  
Sbjct: 1  MAAASHFLRLLVIFLGL-YNLLCSNAVPTSRSVSLLHGSLPFLHVSTDTHMVTKTEEEES 60

Query: 61 HGRMSLELNDYPGSGANNRHTPGPQFRGCADC 93
          HGRM + LNDYPGSGANNRHTP PQFRGCADC
Sbjct: 61 HGRMVVALNDYPGSGANNRHTPRPQFRGCADC 91

[Close]

BLAST of Carg04704 vs. ExPASy TrEMBL
Match: A0A6J1KGA6 (uncharacterized protein LOC111495510 OS=Cucurbita maxima OX=3661 GN=LOC111495510 PE=4 SV=1)

HSP 1 Score: 174.5 bits (441), Expect = 2.1e-40
Identity = 84/92 (91.30%), Postives = 89/92 (96.74%), Query Frame = 0


Query: 1  MAAPTHFLRLLVIFLGLHYNLLSSNAVPSSRSVRLMHASIQHLQVSSNTHMVIANQDKVR 60
          MAAPTHFLRLLVIFLGLHYNLLSSNAVPSSRS+ LMHAS Q+ QVSSNTHMVIANQ+KVR
Sbjct: 1  MAAPTHFLRLLVIFLGLHYNLLSSNAVPSSRSISLMHASNQYPQVSSNTHMVIANQEKVR 60

Query: 61 HGRMSLELNDYPGSGANNRHTPGPQFRGCADC 93
          HGRM++ELNDYPGSGANNRHTPGPQFRGCADC
Sbjct: 61 HGRMTVELNDYPGSGANNRHTPGPQFRGCADC 92

[Close]

BLAST of Carg04704 vs. ExPASy TrEMBL
Match: A0A5D3BKK4 (Putative Disulfide bond formation protein B 2 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold248G00920 PE=4 SV=1)

HSP 1 Score: 134.0 bits (336), Expect = 3.1e-28
Identity = 67/92 (72.83%), Postives = 76/92 (82.61%), Query Frame = 0


Query: 1  MAAPTHFLRLLVIFLGLHYNLLSSNAVPSSRSVRLMHASIQHLQVSSNTHMVIANQDKVR 60
          MAA +HFLRLLVIFLGL YNLL SNAVP+SRSV L+H S+  L VSS+THMV   +++  
Sbjct: 1  MAAASHFLRLLVIFLGL-YNLLCSNAVPTSRSVSLLHGSLPFLHVSSDTHMVTKTEEEES 60

Query: 61 HGRMSLELNDYPGSGANNRHTPGPQFRGCADC 93
          HGRM + LNDYPGSGANNRHTP PQFRGCADC
Sbjct: 61 HGRMVVALNDYPGSGANNRHTPRPQFRGCADC 91

[Close]

BLAST of Carg04704 vs. ExPASy TrEMBL
Match: A0A1S3B758 (uncharacterized protein LOC103486492 OS=Cucumis melo OX=3656 GN=LOC103486492 PE=4 SV=1)

HSP 1 Score: 134.0 bits (336), Expect = 3.1e-28
Identity = 67/92 (72.83%), Postives = 76/92 (82.61%), Query Frame = 0


Query: 1  MAAPTHFLRLLVIFLGLHYNLLSSNAVPSSRSVRLMHASIQHLQVSSNTHMVIANQDKVR 60
          MAA +HFLRLLVIFLGL YNLL SNAVP+SRSV L+H S+  L VSS+THMV   +++  
Sbjct: 1  MAAASHFLRLLVIFLGL-YNLLCSNAVPTSRSVSLLHGSLPFLHVSSDTHMVTKTEEEES 60

Query: 61 HGRMSLELNDYPGSGANNRHTPGPQFRGCADC 93
          HGRM + LNDYPGSGANNRHTP PQFRGCADC
Sbjct: 61 HGRMVVALNDYPGSGANNRHTPRPQFRGCADC 91

[Close]

BLAST of Carg04704 vs. ExPASy TrEMBL
Match: A0A5A7T3C3 (Putative Disulfide bond formation protein B 2 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold112G00820 PE=4 SV=1)

HSP 1 Score: 132.9 bits (333), Expect = 6.9e-28
Identity = 66/92 (71.74%), Postives = 76/92 (82.61%), Query Frame = 0


Query: 1  MAAPTHFLRLLVIFLGLHYNLLSSNAVPSSRSVRLMHASIQHLQVSSNTHMVIANQDKVR 60
          MAA +HFLRLLVIFLGL YNLL SNAVP+SRSV L+H S+  L VS++THMV   +++  
Sbjct: 1  MAAASHFLRLLVIFLGL-YNLLCSNAVPTSRSVSLLHGSLPFLHVSTDTHMVTKTEEEES 60

Query: 61 HGRMSLELNDYPGSGANNRHTPGPQFRGCADC 93
          HGRM + LNDYPGSGANNRHTP PQFRGCADC
Sbjct: 61 HGRMVVALNDYPGSGANNRHTPRPQFRGCADC 91

[Close]

BLAST of Carg04704 vs. ExPASy TrEMBL
Match: A0A6J1CAG5 (uncharacterized protein LOC111008913 OS=Momordica charantia OX=3673 GN=LOC111008913 PE=4 SV=1)

HSP 1 Score: 131.3 bits (329), Expect = 2.0e-27
Identity = 67/92 (72.83%), Postives = 76/92 (82.61%), Query Frame = 0


Query: 1  MAAPTHFLRLLVIFLGLHYNLLSSNAVPSSRSVRLMHASIQHLQVSSNTHMVIANQDKVR 60
          MAAPT  LRLLVIFLG   +LLSSNAVP+SRSV L+H + Q LQVSS THMV   +++V+
Sbjct: 1  MAAPTPLLRLLVIFLGF-CSLLSSNAVPTSRSVSLIHGADQFLQVSSKTHMVSGGEEEVK 60

Query: 61 HGRMSLELNDYPGSGANNRHTPGPQFRGCADC 93
          HGRM + LNDYPGSGANNRHTP PQFRGCADC
Sbjct: 61 HGRMVVALNDYPGSGANNRHTPRPQFRGCADC 91

[Close]

BLAST of Carg04704 vs. TAIR 10
Match: AT3G47510.1 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 19 plant structures; EXPRESSED DURING: 11 growth stages; Has 15 Blast hits to 15 proteins in 7 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 15; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 44.7 bits (104), Expect = 4.8e-05
Identity = 22/31 (70.97%), Postives = 24/31 (77.42%), Query Frame = 0


Query: 63 RMSLELNDYPGSGANNRHTPGPQFRGC-ADC 93
          RM +ELNDYPGSGANNRH   P+ RGC  DC
Sbjct: 57 RMVMELNDYPGSGANNRHL--PRQRGCVVDC 85

The following BLAST results are available for this feature:

BLAST of Carg04704 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG7020052.1	2.2e-44	100.00	hypothetical protein SDJN02_19020, partial [Cucurbita argyrosperma subsp. argyro...	[more]
XP_023519471.1	4.6e-42	95.65	uncharacterized protein LOC111782875 [Cucurbita pepo subsp. pepo]	[more]
XP_023001352.1	4.3e-40	91.30	uncharacterized protein LOC111495510 [Cucurbita maxima]	[more]
XP_008442734.1	6.4e-28	72.83	PREDICTED: uncharacterized protein LOC103486492 [Cucumis melo] >TYJ98895.1 putat...	[more]
KAA0036087.1	1.4e-27	71.74	putative Disulfide bond formation protein B 2 [Cucumis melo var. makuwa]	[more]

BLAST of Carg04704 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of Carg04704 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1KGA6	2.1e-40	91.30	uncharacterized protein LOC111495510 OS=Cucurbita maxima OX=3661 GN=LOC111495510...	[more]
A0A5D3BKK4	3.1e-28	72.83	Putative Disulfide bond formation protein B 2 OS=Cucumis melo var. makuwa OX=119...	[more]
A0A1S3B758	3.1e-28	72.83	uncharacterized protein LOC103486492 OS=Cucumis melo OX=3656 GN=LOC103486492 PE=...	[more]
A0A5A7T3C3	6.9e-28	71.74	Putative Disulfide bond formation protein B 2 OS=Cucumis melo var. makuwa OX=119...	[more]
A0A6J1CAG5	2.0e-27	72.83	uncharacterized protein LOC111008913 OS=Momordica charantia OX=3673 GN=LOC111008...	[more]

BLAST of Carg04704 vs. TAIR 10


Match Name	E-value	Identity	Description
AT3G47510.1	4.8e-05	70.97	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biologic...	[more]

InterPro

Analysis Name: InterPro Annotations of Silver-seed gourd (SMH-JMG-627) v2
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 68..92
None	No IPR available	PANTHER	PTHR33474:SF2	TRANSMEMBRANE PROTEIN	coord: 2..87
None	No IPR available	PANTHER	PTHR33474	TRANSMEMBRANE PROTEIN	coord: 2..87

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Carg04704-RA	Carg04704-RA	mRNA