Carg04677 (gene) Silver-seed gourd (SMH-JMG-627) v2

Overview
NameCarg04677
Typegene
OrganismCucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
DescriptionUnknown protein
LocationCarg_Chr11: 12994248 .. 12997190 (+)
RNA-Seq ExpressionCarg04677
SyntenyCarg04677
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGATCATCAGGTTGGTACCCAACGCAAAAGCTTTGACATGGGGCTGCATTATTAGTGGCACAGATGGAGGGCGTGTTAAGTTGAGGCAATGCGATGATGTCTTGGTGAGGAAACGAGGTGGGTGTCAGACCAGGTTTATGAGAAGAGTATTGGGATGGGGAAATAGGGGGTTGATGATGAAGCCCAAAATCATCGAACAAAGGAACCAAAGTTTCCTCGCCCCACAATACACCGCCGCCCAGTGCCGGCGCCGTTGGAGGAGGGCGCTGCTCACAGAAGTCATTGGGAATTATTGATGTTGTTGTGGTTGTATAGTCGGTGTAGAAGAATTGAGGAATGGAAGCCATATGGATTTTGTTTTGATCGAGAGAGGAAATGGAGTTGAGGGTATTTGGTTTCTTACGTGTATATATATATATATATATATATACGCGTGTGAGTGGGGTAGTGAAATTGGGTTAAGCTTGAGCAAGTTGTTGTTGGATGGGTGGCGGGTGGGTTTATTTGGGTATTAAAAGAGGGATATAATTAGCATTCCAAAACTAAGTAAACTGCGAGCAGTGTGTTTGTTTCTTAACCCCTTCAAACCATGTTTAGGTTTTAGCAACAACAATTAACAAACATGGTCTGATATAAACCTTAAAAGATTGTTATTTGTTAGGGAGTTTGTTGAAATGTAAAGGGCAATGCAAGAATCTGATATCACATGGACCTCAAACATTTGGCATCTAACATCTTAACCACAAATATCCTCTTACGAACCTGATTACATATTAATAGAGAAATTAGGAAAGTATTTTGGATTCATTCTCTTTTGATTTTCCAATAGAAATTAAAGAAAGAAAAAGAATAAAAAGGATGTGGTAAATTTATGAATTTGAGTTTCTTTTGACTACAAAGTTTTTTCCCCCAAAGAAGAGGTGTACAAAGTAAGGTTATTATATGTTATCTCTATTGCCTCTATATAGGAATTGGTGAGGAATATAATGATTATTCACTAGAAACTCAAGGAAGCGGTGTCTATAGTAATAATTTAATTATATAGGAATTTGAATTTAATACGAGGAGATGATGATCCTTGATCAATCCAGTCAAAGAAGAATTAGCTTTTGTTACATGCGTTTGTTGAATTAAGAGAGGGTTATCGCATATAAAACCCAAATTGGTGCTTTTGAAGAATCTTTGTCGTCCATTATCGATGCCTTTAATTACATCAGTCCTATCGCCAACTTAAATTCACGTTGCGAGTAGAATATAATCTTGAGCGAGTGTTGTAAGACATAAAAATGTCAGTAGAATCTTGAACAATTCATCAGTTTCAAACTATTTTATAAGTATCCGATTCAAAAAGATTTCTCAACAGATTTTGCACTACTGTTTTCTTATCTTATAAAGTGATTCCCATGCTTTCATTTCTTTTCTTGTCGCTGCCTACTAAAGTATATATCAAGCTACCTAATTCAGCAAGTAATCCGAGGTCTCCACTCCATACAACGTTATGTACATACAACAGGTCTGGTAGGAAAGGAAGAGTTAAAGTCGGGTAAAGTGGAGATTAAGAATGAAAGTAAAGTAAGTAAATCCAAGTTGTTGGTATGGAGGATGCGTTTTATGACGTTTTATCCTCTCACGCCCAAATTGGTACAAAAGTGGAGAGTTAAAAAGAAAAAAGAGATTGAACATAAGATTTTGTAGGGCTGAAATTGGTATCAGGTACCCATAATGGATTGTTTGCCCCTTTGTATCCCATCAAACATTTTACCCCAACACCTCTTCCTTCCCTTCCCTACACCCTCTGAGTGTGGGCCTTACTGCCCACTTGCATGGTTCTCCATAAAGTACACACCTTTGCCCATTTTCTTTGACTAAAGCTACGAACCCACACACACCAAAAAGGGGGAAAAGAAAAGAGAAAACTGTACGTTATTCCCATCATAAATCACAACTACGATGAACTTAATTAACCATACAGGTAATGCCTGGATTATGAATGAACAAATGTAAGCGCAAAATGGAAAGTTTATAGTGTGTTTAGAGAAAAAACCCATGTGTACTGGTTGAGGTAGAGGAGAGGCTGAAAATGAATATAAAGATGATGATATGTTGTAGAGCATAAGATGAAAAGAAAGCTTTTGTTTTGTTTTGTTTTGTTTTGTTTTGTTTTGTTTTGTTTTGTTTTGTTTTGTTTTTTCTTGTCTTGTTTTGTCTTGGGTGTTTGCCACTTTCACCATTCATATATGCTGCTCTCCCTTTGGTTTGATCTCAATGTCTGGTGTTTCTGCAGGCACAGGGTTTGTTCCTCTGGAACTTCATATCTATCTATGAACATTTTCTATTTCTTTTCCCTTCTTTTCTTTTTACAAAAAGAATAACAAAAAATTATAAAATAACGGAGAAGTAATCCATGTGGGACAATTATTCTTCCATTCAAATTCTTTTTATATCATTATTTTACTAAAACTTGTTCCCACAATGCTGACAATTTCATGTTTTTCCAATTTTCTTTTTTTCTTTTTTTCTTTTTTTTCTTTTCTAAAAAAAGTATTTTAGGGGGAAAACAACATTTTTGAAAAAAGTATTATTATAATGTAAATAATAAGGACTCCAGGCCCGGCCCAGATCATTCTTCGACGAAAGCCCCACTGAACTTTTTACCGCATAAACAGTCCAAAATCTTGGGCCTAGGGCTCGGTGGGCAATATGATTCGCCATTGTTAGTTTGGTTATGTATACTTCTTATGCTACATCTGCCCGTGTTGGATATTCTCCAGAATACGGCCATTGCCATAGATCCGCTTCGACCTTGGTTTAGCCAAAACCCGCGCCTTCCCTCCAACTTTATCTCTGTCATCGCTCTTCTTCTACCGATAGCTCCCCTAGTTGAAGGGACTTCTGCTGGACTCTGGAGTTTCAGCTTTCAATTCAAAGCATTGACCGAATAG

mRNA sequence

ATGATCATCAGGTTGGTACCCAACGCAAAAGCTTTGACATGGGGCTGCATTATTAGTGGCACAGATGGAGGGCGTGTTAAGTTGAGGCAATGCGATGATGTCTTGGTGAGGAAACGAGGTGGGTGTCAGACCAGGTTTATGAGAAGAGTATTGGGATGGGGAAATAGGGGGTTGATGATGAAGCCCAAAATCATCGAACAAAGGAACCAAAGTTTCCTCGCCCCACAATACACCGCCGCCCAGTGCCGGCGCCGTTGGAGGAGGGCGCTGCTCACAGAACAAGTAATCCGAGGTCTCCACTCCATACAACGTTATGTACATACAACAGGTCTGGTAGGAAAGGAAGAGTTAAAGTCGGGTAAAGTGGAGATTAAGAATGAAAGTAAAGACTCCAGGCCCGGCCCAGATCATTCTTCGACGAAAGCCCCACTGAACTTTTTACCGCATAAACAGTCCAAAATCTTGGGCCTAGGGCTCGGTGGGCAATATGATTCGCCATTGTTAGTTTGGTTATGTATACTTCTTATGCTACATCTGCCCGTGTTGGATATTCTCCAGAATACGGCCATTGCCATAGATCCGCTTCGACCTTGGTTTAGCCAAAACCCGCGCCTTCCCTCCAACTTTATCTCTGTCATCGCTCTTCTTCTACCGATAGCTCCCCTAGTTGAAGGGACTTCTGCTGGACTCTGGAGTTTCAGCTTTCAATTCAAAGCATTGACCGAATAG

Coding sequence (CDS)

ATGATCATCAGGTTGGTACCCAACGCAAAAGCTTTGACATGGGGCTGCATTATTAGTGGCACAGATGGAGGGCGTGTTAAGTTGAGGCAATGCGATGATGTCTTGGTGAGGAAACGAGGTGGGTGTCAGACCAGGTTTATGAGAAGAGTATTGGGATGGGGAAATAGGGGGTTGATGATGAAGCCCAAAATCATCGAACAAAGGAACCAAAGTTTCCTCGCCCCACAATACACCGCCGCCCAGTGCCGGCGCCGTTGGAGGAGGGCGCTGCTCACAGAACAAGTAATCCGAGGTCTCCACTCCATACAACGTTATGTACATACAACAGGTCTGGTAGGAAAGGAAGAGTTAAAGTCGGGTAAAGTGGAGATTAAGAATGAAAGTAAAGACTCCAGGCCCGGCCCAGATCATTCTTCGACGAAAGCCCCACTGAACTTTTTACCGCATAAACAGTCCAAAATCTTGGGCCTAGGGCTCGGTGGGCAATATGATTCGCCATTGTTAGTTTGGTTATGTATACTTCTTATGCTACATCTGCCCGTGTTGGATATTCTCCAGAATACGGCCATTGCCATAGATCCGCTTCGACCTTGGTTTAGCCAAAACCCGCGCCTTCCCTCCAACTTTATCTCTGTCATCGCTCTTCTTCTACCGATAGCTCCCCTAGTTGAAGGGACTTCTGCTGGACTCTGGAGTTTCAGCTTTCAATTCAAAGCATTGACCGAATAG

Protein sequence

MIIRLVPNAKALTWGCIISGTDGGRVKLRQCDDVLVRKRGGCQTRFMRRVLGWGNRGLMMKPKIIEQRNQSFLAPQYTAAQCRRRWRRALLTEQVIRGLHSIQRYVHTTGLVGKEELKSGKVEIKNESKDSRPGPDHSSTKAPLNFLPHKQSKILGLGLGGQYDSPLLVWLCILLMLHLPVLDILQNTAIAIDPLRPWFSQNPRLPSNFISVIALLLPIAPLVEGTSAGLWSFSFQFKALTE
Homology
[Close]
BLAST of Carg04677 vs. NCBI nr
Match: KAG7023007.1 (hypothetical protein SDJN02_16743, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 490.7 bits (1262), Expect = 7.1e-135
Identity = 242/242 (100.00%), Postives = 242/242 (100.00%), Query Frame = 0 

Query: 1   MIIRLVPNAKALTWGCIISGTDGGRVKLRQCDDVLVRKRGGCQTRFMRRVLGWGNRGLMM 60
           MIIRLVPNAKALTWGCIISGTDGGRVKLRQCDDVLVRKRGGCQTRFMRRVLGWGNRGLMM
Sbjct: 1   MIIRLVPNAKALTWGCIISGTDGGRVKLRQCDDVLVRKRGGCQTRFMRRVLGWGNRGLMM 60

Query: 61  KPKIIEQRNQSFLAPQYTAAQCRRRWRRALLTEQVIRGLHSIQRYVHTTGLVGKEELKSG 120
           KPKIIEQRNQSFLAPQYTAAQCRRRWRRALLTEQVIRGLHSIQRYVHTTGLVGKEELKSG
Sbjct: 61  KPKIIEQRNQSFLAPQYTAAQCRRRWRRALLTEQVIRGLHSIQRYVHTTGLVGKEELKSG 120

Query: 121 KVEIKNESKDSRPGPDHSSTKAPLNFLPHKQSKILGLGLGGQYDSPLLVWLCILLMLHLP 180
           KVEIKNESKDSRPGPDHSSTKAPLNFLPHKQSKILGLGLGGQYDSPLLVWLCILLMLHLP
Sbjct: 121 KVEIKNESKDSRPGPDHSSTKAPLNFLPHKQSKILGLGLGGQYDSPLLVWLCILLMLHLP 180

Query: 181 VLDILQNTAIAIDPLRPWFSQNPRLPSNFISVIALLLPIAPLVEGTSAGLWSFSFQFKAL 240
           VLDILQNTAIAIDPLRPWFSQNPRLPSNFISVIALLLPIAPLVEGTSAGLWSFSFQFKAL
Sbjct: 181 VLDILQNTAIAIDPLRPWFSQNPRLPSNFISVIALLLPIAPLVEGTSAGLWSFSFQFKAL 240

Query: 241 TE 243
           TE
Sbjct: 241 TE 242

The following BLAST results are available for this feature:
BLAST of Carg04677 vs. NCBI nr
Match NameE-valueIdentityDescription
KAG7023007.17.1e-135100.00hypothetical protein SDJN02_16743, partial [Cucurbita argyrosperma subsp. argyro... [more]
BLAST of Carg04677 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of Carg04677 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of Carg04677 vs. NCBI nr
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Silver-seed gourd (SMH-JMG-627) v2
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 125..144

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Carg04677-RACarg04677-RAmRNA